Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0016345

Physical Location & Seq

Genomic Coordinates Forward (+)

20381387 .. 20382327

Gene Structure 941 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG219200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTTGTTTGAGAAATATTCATTCGAGAGTAAAGTGTGGCATACAAGCGAACCCAACCCAAGGGGAGGCGAGGACTTGGTTCTGATCGAAATAAAGGTCTACACTAAGATCGGAGCCGCCTTGAGGATTGGCTCTCCAACGAAGTATGGCGAACCATACCACAGTGAAGGTAGAGAACTCATCATTTCTAATCTCTCTCGTAGCGAGCTATTATCCAATAGGAGTGAGTATACATGGAGAATGGTCGAGTTCTTTTCAGGCGCATTTAAGGAGGAGCCACTCCCCGATGATGTGCGACGATCTTGTATTGAAGAAGTATTCCAGGTGGTCGAAAAAGATCTAGTGGTGGCATCATCATTTTCTGTTTTTCATGTCGACATATTGGAAGTGGTTGACCACGTGCTTGAGTCTGCTGCCGTTGCCTTTCTCGACGATGCGATATCATCAATCGAGGGTTTGGAGAAAGTGAGAGTTGATAGCTGTTTCTTGGGGTTAGAAGACTCTTGTGCTATTTGTAGGGAGGACCTAATTGATAGAGAAGGCAAGAAACAATTCAAACAACCTAAGAGGAAGAGCAAGAGGCTGCTTGGATTACAAAGCCTCAGCACCACCATCGCTAAAAGGCCAAGAAAAGAGCCGCCCCCTTCGAGGGTAATTGCTCGCTTGCCCTGCTCACACCATTTTCATGGAGATTGCATTGTCAAGTGGCTCAAAAACAATCATGTCTGTCCCCTGTGCCGATACCAAGTGGGAGGCCGGTTCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

255

Amino Acids

29.08

Weight (kDa)

6.72

Isoelectric Point (pI)

51.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	168 - 247	4.8e-08	RING-H2 zinc finger domain
zf-RING_2	PF13639	218 - 247	2e-10	Ring finger domain
zf-C3HC4	PF00097	221 - 246	1.2e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	222 - 246	2.4e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016345)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g20142 FvH4_5g20161 FvH4_5g20170
rosa_laevigata	RLG00000003397 RLG00000003399
rosa_multiflora	Rmu_sc0005112.1_g000002 Rmu_sc0005112.1_g000003 Rmu_sc0009349.1_g000015
rosa_samantha	Rh7AG218900 Rh7AG219200 Rh7BG215400 Rh7CG231900 Rh7CG232100 Rh7DG226300 Rh7DG226500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	99, 230, 375
AciI	CCGC	2 cut(s)	117, 638
AcvI	CACGTG	1 cut(s)	400
AfiI	CCNNNNNNNGG	5 cut(s)	60, 65, 123, 648, 649
AgsI	TTSAA	2 cut(s)	311, 556
AjnI	CCWGG	1 cut(s)	321
AluBI	AGCT	2 cut(s)	208, 480
AluI	AGCT	2 cut(s)	208, 480
AoxI	GGCC	2 cut(s)	623, 754
ApeKI	GCWGC	2 cut(s)	413, 583
ArsI	GACNNNNNNTTYG	2 cut(s)	81, 113
Asp700I	GAANNNNTTC	1 cut(s)	551
AspLEI	GCGC	1 cut(s)	263
AspS9I	GGNCC	1 cut(s)	523
AvaII	GGWCC	1 cut(s)	523
BbrPI	CACGTG	1 cut(s)	400
BbsI	GAAGAC	1 cut(s)	504
BbvCI	CCTCAGC	1 cut(s)	602
BbvI	GCAGC	2 cut(s)	400, 570
BccI	CCATC	1 cut(s)	620
BceAI	ACGGC	1 cut(s)	401
BcgI	CGANNNNNNTGC	2 cut(s)	595, 629
BciT130I	CCWGG	1 cut(s)	323
BfaI	CTAG	1 cut(s)	341
BglII	AGATCT	1 cut(s)	337
BisI	GCNGC	4 cut(s)	117, 414, 584, 638
BlsI	GCNGC	4 cut(s)	118, 415, 585, 639
Bme1390I	CCNGG	1 cut(s)	323
Bme18I	GGWCC	1 cut(s)	523
BmgT120I	GGNCC	1 cut(s)	523
BmiI	GGNNCC	2 cut(s)	115, 276
BmrFI	CCNGG	1 cut(s)	323
BmsI	GCATC	2 cut(s)	359, 424
BpiI	GAAGAC	1 cut(s)	504
Bpu10I	CCTNAGC	1 cut(s)	602
BpuEI	CTTGAG	2 cut(s)	142, 425
BsaAI	YACGTR	1 cut(s)	400
BsaJI	CCNNGG	1 cut(s)	59
Bsc4I	CCNNNNNNNGG	5 cut(s)	60, 65, 123, 648, 649
Bse118I	RCCGGY	1 cut(s)	756
BseBI	CCWGG	1 cut(s)	323
BseDI	CCNNGG	1 cut(s)	59
BseLI	CCNNNNNNNGG	5 cut(s)	60, 65, 123, 648, 649
BseMII	CTCAG	1 cut(s)	616
BseRI	GAGGAG	1 cut(s)	287
BseXI	GCAGC	2 cut(s)	400, 570
BshFI	GGCC	2 cut(s)	625, 756
BsiSI	CCGG	1 cut(s)	757
BslFI	GGGAC	1 cut(s)	714
BslI	CCNNNNNNNGG	5 cut(s)	60, 65, 123, 648, 649
BsmFI	GGGAC	1 cut(s)	714
BsnI	GGCC	2 cut(s)	625, 756
Bsp143I	GATC	4 cut(s)	84, 108, 299, 337
BspACI	CCGC	2 cut(s)	117, 638
BspANI	GGCC	2 cut(s)	625, 756
BspCNI	CTCAG	1 cut(s)	615
BspLI	GGNNCC	2 cut(s)	115, 276
BspQI	GCTCTTC	1 cut(s)	566
BsrFI	RCCGGY	1 cut(s)	756
BssAI	RCCGGY	1 cut(s)	756
BssECI	CCNNGG	1 cut(s)	59
BssMI	GATC	4 cut(s)	84, 108, 299, 337
BssNAI	GTATAC	1 cut(s)	231
BssT1I	CCWWGG	1 cut(s)	59
Bst1107I	GTATAC	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	323
Bst4CI	ACNGT	1 cut(s)	164
Bst6I	CTCTTC	1 cut(s)	566
BstBAI	YACGTR	1 cut(s)	400
BstC8I	GCNNGC	3 cut(s)	206, 661, 665
BstDEI	CTNAG	3 cut(s)	105, 564, 602
BstHHI	GCGC	1 cut(s)	263
BstKTI	GATC	4 cut(s)	87, 111, 302, 340
BstMBI	GATC	4 cut(s)	84, 108, 299, 337
BstMWI	GCNNNNNNNGC	2 cut(s)	419, 669
BstNI	CCWGG	1 cut(s)	323
BstSCI	CCNGG	1 cut(s)	321
BstV1I	GCAGC	2 cut(s)	400, 570
BstV2I	GAAGAC	1 cut(s)	504
BstX2I	RGATCY	1 cut(s)	337
BstXI	CCANNNNNNTGG	1 cut(s)	686
BstYI	RGATCY	1 cut(s)	337
BstZ17I	GTATAC	1 cut(s)	231
BsuRI	GGCC	2 cut(s)	625, 756
BtgZI	GCGATG	1 cut(s)	598
BtsIMutI	CAGTG	1 cut(s)	169
Cac8I	GCNNGC	3 cut(s)	206, 661, 665
CfoI	GCGC	1 cut(s)	263
Cfr10I	RCCGGY	1 cut(s)	756
Cfr13I	GGNCC	1 cut(s)	523
CviAII	CATG	4 cut(s)	234, 371, 686, 722
DdeI	CTNAG	3 cut(s)	105, 564, 602
DpnI	GATC	4 cut(s)	86, 110, 301, 339
DpnII	GATC	4 cut(s)	84, 108, 299, 337
Eam1104I	CTCTTC	1 cut(s)	566
EarI	CTCTTC	1 cut(s)	566
Eco130I	CCWWGG	1 cut(s)	59
Eco32I	GATATC	1 cut(s)	441
Eco47I	GGWCC	1 cut(s)	523
Eco72I	CACGTG	1 cut(s)	400
EcoO109I	RGGNCCY	1 cut(s)	523
EcoRII	CCWGG	1 cut(s)	321
EcoRV	GATATC	1 cut(s)	441
EcoT14I	CCWWGG	1 cut(s)	59
ErhI	CCWWGG	1 cut(s)	59
FaeI	CATG	4 cut(s)	237, 374, 689, 725
FaiI	YATR	9 cut(s)	42, 147, 157, 231, 235, 372, 380, 687, 723
FaqI	GGGAC	1 cut(s)	714
FatI	CATG	4 cut(s)	233, 370, 685, 721
FblI	GTMKAC	3 cut(s)	99, 230, 375
Fnu4HI	GCNGC	4 cut(s)	117, 414, 584, 638
Fsp4HI	GCNGC	4 cut(s)	117, 414, 584, 638
FspBI	CTAG	1 cut(s)	341
GlaI	GCGC	1 cut(s)	262
GluI	GCNGC	4 cut(s)	117, 414, 584, 638
HaeIII	GGCC	2 cut(s)	625, 756
HapII	CCGG	1 cut(s)	757
HhaI	GCGC	1 cut(s)	263
Hin1II	CATG	4 cut(s)	237, 374, 689, 725
Hin6I	GCGC	1 cut(s)	261
HinP1I	GCGC	1 cut(s)	261
HincII	GTYRAC	2 cut(s)	376, 394
HindII	GTYRAC	2 cut(s)	376, 394
HinfI	GANTC	2 cut(s)	407, 500
HpaII	CCGG	1 cut(s)	757
Hpy166II	GTNNAC	4 cut(s)	100, 231, 376, 394
Hpy188I	TCNGA	2 cut(s)	84, 113
Hpy188III	TCNNGA	2 cut(s)	25, 428
Hpy8I	GTNNAC	4 cut(s)	100, 231, 376, 394
Hpy99I	CGWCG	2 cut(s)	300, 434
HpyAV	CCTTC	3 cut(s)	161, 533, 654
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4IV	ACGT	1 cut(s)	399
HpyCH4V	TGCA	1 cut(s)	696
HpyF10VI	GCNNNNNNNGC	2 cut(s)	419, 669
HpyF3I	CTNAG	3 cut(s)	105, 564, 602
HpySE526I	ACGT	1 cut(s)	399
Hsp92II	CATG	4 cut(s)	237, 374, 689, 725
HspAI	GCGC	1 cut(s)	261
Kzo9I	GATC	4 cut(s)	84, 108, 299, 337
LguI	GCTCTTC	1 cut(s)	566
LmnI	GCTCC	2 cut(s)	113, 274
LpnPI	CCDG	5 cut(s)	243, 308, 335, 682, 746
Lsp1109I	GCAGC	2 cut(s)	400, 570
LweI	GCATC	2 cut(s)	359, 424
MaeI	CTAG	1 cut(s)	341
MaeII	ACGT	1 cut(s)	399
MalI	GATC	4 cut(s)	86, 110, 301, 339
MboI	GATC	4 cut(s)	84, 108, 299, 337
MboII	GAAGA	3 cut(s)	323, 509, 583
MflI	RGATCY	1 cut(s)	337
MluCI	AATT	3 cut(s)	528, 551, 654
MlyI	GAGTC	2 cut(s)	416, 494
MmeI	TCCRAC	1 cut(s)	161
MroXI	GAANNNNTTC	1 cut(s)	551
MseI	TTAA	1 cut(s)	267
MslI	CAYNNNNRTG	1 cut(s)	684
MspI	CCGG	1 cut(s)	757
MspR9I	CCNGG	1 cut(s)	323
MvaI	CCWGG	1 cut(s)	323
MwoI	GCNNNNNNNGC	2 cut(s)	419, 669
NdeII	GATC	4 cut(s)	84, 108, 299, 337
NlaIII	CATG	4 cut(s)	237, 374, 689, 725
NlaIV	GGNNCC	2 cut(s)	115, 276
PciSI	GCTCTTC	1 cut(s)	566
PdmI	GAANNNNTTC	1 cut(s)	551
PkrI	GCNGC	4 cut(s)	118, 415, 585, 639
PleI	GAGTC	2 cut(s)	415, 494
PmaCI	CACGTG	1 cut(s)	400
PmlI	CACGTG	1 cut(s)	400
PpsI	GAGTC	2 cut(s)	415, 494
Ppu21I	YACGTR	1 cut(s)	400
PpuMI	RGGWCCY	1 cut(s)	523
Psp5II	RGGWCCY	1 cut(s)	523
Psp6I	CCWGG	1 cut(s)	321
PspCI	CACGTG	1 cut(s)	400
PspGI	CCWGG	1 cut(s)	321
PspN4I	GGNNCC	2 cut(s)	115, 276
PspPI	GGNCC	1 cut(s)	523
PspPPI	RGGWCCY	1 cut(s)	523
PsuI	RGATCY	1 cut(s)	337
RseI	CAYNNNNRTG	1 cut(s)	684
SalI	GTCGAC	1 cut(s)	374
SapI	GCTCTTC	1 cut(s)	566
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	4 cut(s)	117, 414, 584, 638
Sau3AI	GATC	4 cut(s)	84, 108, 299, 337
Sau96I	GGNCC	1 cut(s)	523
SchI	GAGTC	2 cut(s)	416, 494
ScrFI	CCNGG	1 cut(s)	323
SetI	ASST	8 cut(s)	99, 172, 210, 327, 402, 482, 528, 565
SfaNI	GCATC	2 cut(s)	359, 424
SinI	GGWCC	1 cut(s)	523
SmiMI	CAYNNNNRTG	1 cut(s)	684
SmlI	CTYRAG	2 cut(s)	121, 404
SmoI	CTYRAG	2 cut(s)	121, 404
Sse9I	AATT	3 cut(s)	528, 551, 654
SsiI	CCGC	2 cut(s)	117, 638
SspI	AATATT	1 cut(s)	17
SspMI	CTAG	1 cut(s)	341
StyD4I	CCNGG	1 cut(s)	321
StyI	CCWWGG	1 cut(s)	59
TaaI	ACNGT	1 cut(s)	164
TaiI	ACGT	1 cut(s)	402
TaqI	TCGA	9 cut(s)	24, 87, 246, 330, 375, 429, 450, 647, 762
TasI	AATT	3 cut(s)	528, 551, 654
TauI	GCSGC	2 cut(s)	119, 640
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TscAI	CASTG	1 cut(s)	169
TseI	GCWGC	2 cut(s)	413, 583
TspDTI	ATGAA	3 cut(s)	9, 359, 674
TspRI	CASTG	1 cut(s)	169
VpaK11BI	GGWCC	1 cut(s)	523
XmiI	GTMKAC	3 cut(s)	99, 230, 375
XmnI	GAANNNNTTC	1 cut(s)	551
XspI	CTAG	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.