Rh7CG232100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0016345
Physical Location & Seq
Forward (+)
21685823 .. 21692321
6499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG232100.1

Sequence Viewer

Length: 342 bp
ATGGCGAACCATACCACAGTGAAGGCGCATTTAAGGAAGAGCCACTCCCTGACGATGTGCGACGATCTTGTATTGAAGAAGTATTCCGGGGAGGACCTAATTGATAGAGAAGGCAAGAAACAATTCAAACAACCTAAGAGGAAGAGCAAGAGGCTGCTTGGATTACAAAGCCTCAGCACCACCATCGCTAAAAGGCCAAGAAAAGAGCCGCCCCCTTCGAGGCGACTAACTTCATCTCTTGCTAGCCGCCTCGCGATGGGTCCTGGATTTGATGGCGGTGTCGATCGACTAGATAAAGAACTATCAGACCCAATTGTTGGCCAATTTCAAGAAGATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.66

Weight (kDa)

10.0

Isoelectric Point (pI)

51.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 317
AccII CGCG 1 cut(s) 254
AciI CCGC 3 cut(s) 209, 247, 276
AcoI YGGCCR 1 cut(s) 319
AfiI CCNNNNNNNGG 3 cut(s) 219, 256, 317
AgsI TTSAA 3 cut(s) 76, 127, 329
AjnI CCWGG 1 cut(s) 262
AoxI GGCC 2 cut(s) 194, 319
ApeKI GCWGC 1 cut(s) 154
Asp700I GAANNNNTTC 1 cut(s) 122
AspLEI GCGC 1 cut(s) 28
AspS9I GGNCC 2 cut(s) 94, 260
AsuC2I CCSGG 1 cut(s) 88
AsuNHI GCTAGC 1 cut(s) 242
AvaII GGWCC 2 cut(s) 94, 260
BalI TGGCCA 1 cut(s) 321
BbvCI CCTCAGC 1 cut(s) 173
BbvI GCAGC 1 cut(s) 141
BccI CCATC 3 cut(s) 191, 250, 266
BcgI CGANNNNNNTGC 2 cut(s) 166, 200
BciT130I CCWGG 1 cut(s) 264
BcnI CCSGG 1 cut(s) 88
BfaI CTAG 2 cut(s) 243, 290
BisI GCNGC 3 cut(s) 155, 209, 247
BlsI GCNGC 3 cut(s) 156, 210, 248
Bme1390I CCNGG 2 cut(s) 88, 264
Bme18I GGWCC 2 cut(s) 94, 260
BmgT120I GGNCC 2 cut(s) 94, 260
BmiI GGNNCC 1 cut(s) 261
BmrFI CCNGG 2 cut(s) 88, 264
BmtI GCTAGC 1 cut(s) 246
Bpu10I CCTNAGC 1 cut(s) 173
BpuMI CCSGG 1 cut(s) 88
BsaJI CCNNGG 1 cut(s) 87
Bsc4I CCNNNNNNNGG 3 cut(s) 219, 256, 317
BseBI CCWGG 1 cut(s) 264
BseDI CCNNGG 1 cut(s) 87
BseLI CCNNNNNNNGG 3 cut(s) 219, 256, 317
BseMII CTCAG 1 cut(s) 187
BseXI GCAGC 1 cut(s) 141
Bsh1236I CGCG 1 cut(s) 254
Bsh1285I CGRYCG 1 cut(s) 286
BshFI GGCC 2 cut(s) 196, 321
BsiEI CGRYCG 1 cut(s) 286
BsiSI CCGG 1 cut(s) 87
BslI CCNNNNNNNGG 3 cut(s) 219, 256, 317
BsnI GGCC 2 cut(s) 196, 321
Bsp143I GATC 2 cut(s) 64, 283
Bsp68I TCGCGA 1 cut(s) 254
BspACI CCGC 3 cut(s) 209, 247, 276
BspANI GGCC 2 cut(s) 196, 321
BspCNI CTCAG 1 cut(s) 186
BspFNI CGCG 1 cut(s) 254
BspHI TCATGA 1 cut(s) 338
BspLI GGNNCC 1 cut(s) 261
BspOI GCTAGC 1 cut(s) 246
BspQI GCTCTTC 2 cut(s) 32, 137
BssECI CCNNGG 1 cut(s) 87
BssMI GATC 2 cut(s) 64, 283
Bst2UI CCWGG 1 cut(s) 264
Bst4CI ACNGT 1 cut(s) 19
Bst6I CTCTTC 2 cut(s) 32, 137
BstC8I GCNNGC 1 cut(s) 244
BstDEI CTNAG 2 cut(s) 135, 173
BstFNI CGCG 1 cut(s) 254
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 2 cut(s) 67, 286
BstMBI GATC 2 cut(s) 64, 283
BstMCI CGRYCG 1 cut(s) 286
BstNI CCWGG 1 cut(s) 264
BstSCI CCNGG 2 cut(s) 86, 262
BstUI CGCG 1 cut(s) 254
BstV1I GCAGC 1 cut(s) 141
BsuRI GGCC 2 cut(s) 196, 321
BtgZI GCGATG 2 cut(s) 169, 269
BtsIMutI CAGTG 1 cut(s) 24
BtuMI TCGCGA 1 cut(s) 254
Cac8I GCNNGC 1 cut(s) 244
CciI TCATGA 1 cut(s) 338
CfoI GCGC 1 cut(s) 28
Cfr13I GGNCC 2 cut(s) 94, 260
CviAII CATG 1 cut(s) 339
CviJI RGCY 7 cut(s) 42, 154, 171, 196, 208, 246, 321
CviKI_1 RGCY 7 cut(s) 42, 154, 171, 196, 208, 246, 321
DdeI CTNAG 2 cut(s) 135, 173
DpnI GATC 2 cut(s) 66, 285
DpnII GATC 2 cut(s) 64, 283
EaeI YGGCCR 1 cut(s) 319
Eam1104I CTCTTC 2 cut(s) 32, 137
EarI CTCTTC 2 cut(s) 32, 137
Eco47I GGWCC 2 cut(s) 94, 260
EcoO109I RGGNCCY 2 cut(s) 94, 260
EcoRII CCWGG 1 cut(s) 262
FaeI CATG 1 cut(s) 342
FaiI YATR 2 cut(s) 12, 340
FatI CATG 1 cut(s) 338
Fnu4HI GCNGC 3 cut(s) 155, 209, 247
Fsp4HI GCNGC 3 cut(s) 155, 209, 247
FspBI CTAG 2 cut(s) 243, 290
GlaI GCGC 1 cut(s) 27
GluI GCNGC 3 cut(s) 155, 209, 247
HaeIII GGCC 2 cut(s) 196, 321
HapII CCGG 1 cut(s) 87
HhaI GCGC 1 cut(s) 28
Hin1II CATG 1 cut(s) 342
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HinfI GANTC 1 cut(s) 335
HpaII CCGG 1 cut(s) 87
Hpy188I TCNGA 1 cut(s) 307
Hpy188III TCNNGA 3 cut(s) 253, 329, 339
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 3 cut(s) 16, 104, 225
HpyCH4III ACNGT 1 cut(s) 19
HpyF3I CTNAG 2 cut(s) 135, 173
Hsp92II CATG 1 cut(s) 342
HspAI GCGC 1 cut(s) 26
Kzo9I GATC 2 cut(s) 64, 283
LguI GCTCTTC 2 cut(s) 32, 137
LpnPI CCDG 4 cut(s) 62, 100, 249, 276
Lsp1109I GCAGC 1 cut(s) 141
MaeI CTAG 2 cut(s) 243, 290
MalI GATC 2 cut(s) 66, 285
MboI GATC 2 cut(s) 64, 283
MboII GAAGA 3 cut(s) 49, 88, 154
MfeI CAATTG 1 cut(s) 312
MlsI TGGCCA 1 cut(s) 321
MluCI AATT 4 cut(s) 99, 122, 312, 323
MluNI TGGCCA 1 cut(s) 321
MnlI CCTC 6 cut(s) 85, 132, 144, 182, 213, 260
Mox20I TGGCCA 1 cut(s) 321
MroXI GAANNNNTTC 1 cut(s) 122
MscI TGGCCA 1 cut(s) 321
MseI TTAA 1 cut(s) 32
Msp20I TGGCCA 1 cut(s) 321
MspI CCGG 1 cut(s) 87
MspR9I CCNGG 2 cut(s) 88, 264
MunI CAATTG 1 cut(s) 312
MvaI CCWGG 1 cut(s) 264
MvnI CGCG 1 cut(s) 254
NciI CCSGG 1 cut(s) 88
NdeII GATC 2 cut(s) 64, 283
NheI GCTAGC 1 cut(s) 242
NlaIII CATG 1 cut(s) 342
NlaIV GGNNCC 1 cut(s) 261
NruI TCGCGA 1 cut(s) 254
PagI TCATGA 1 cut(s) 338
PciSI GCTCTTC 2 cut(s) 32, 137
PdmI GAANNNNTTC 1 cut(s) 122
PfeI GAWTC 1 cut(s) 335
PflMI CCANNNNNTGG 1 cut(s) 317
PfoI TCCNGGA 1 cut(s) 262
PkrI GCNGC 3 cut(s) 156, 210, 248
Ple19I CGATCG 1 cut(s) 286
PpuMI RGGWCCY 2 cut(s) 94, 260
Psp5II RGGWCCY 2 cut(s) 94, 260
Psp6I CCWGG 1 cut(s) 262
PspGI CCWGG 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 261
PspPI GGNCC 2 cut(s) 94, 260
PspPPI RGGWCCY 2 cut(s) 94, 260
PvuI CGATCG 1 cut(s) 286
RruI TCGCGA 1 cut(s) 254
SapI GCTCTTC 2 cut(s) 32, 137
SaqAI TTAA 1 cut(s) 32
SatI GCNGC 3 cut(s) 155, 209, 247
Sau3AI GATC 2 cut(s) 64, 283
Sau96I GGNCC 2 cut(s) 94, 260
ScrFI CCNGG 2 cut(s) 88, 264
SetI ASST 2 cut(s) 99, 136
SinI GGWCC 2 cut(s) 94, 260
Sse9I AATT 4 cut(s) 99, 122, 312, 323
SsiI CCGC 3 cut(s) 209, 247, 276
SspMI CTAG 2 cut(s) 243, 290
StyD4I CCNGG 2 cut(s) 86, 262
TaaI ACNGT 1 cut(s) 19
TaqI TCGA 3 cut(s) 218, 282, 286
TasI AATT 4 cut(s) 99, 122, 312, 323
TauI GCSGC 2 cut(s) 211, 249
TfiI GAWTC 1 cut(s) 335
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TscAI CASTG 1 cut(s) 24
TseI GCWGC 1 cut(s) 154
TspDTI ATGAA 2 cut(s) 222, 327
TspRI CASTG 1 cut(s) 24
Van91I CCANNNNNTGG 1 cut(s) 317
VpaK11BI GGWCC 2 cut(s) 94, 260
XmnI GAANNNNTTC 1 cut(s) 122
XspI CTAG 2 cut(s) 243, 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.