Rh7DG226500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0016345
Physical Location & Seq
Forward (+)
22128378 .. 22140854
12477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG226500.1

Sequence Viewer

Length: 603 bp
ATGGAAGTGCTCTGCTTTTCTAGATTATTCCATTCGGTTGTTGAAGCAATCATGTTGTTTGAGAAATATTCATTCGAGAGTAAAGTGTGGCATACAAGCGAACCCAACCCAAGGGGAGGCGAGGACTTGGTTCTGATCGAAATAAAGGTCTACACTAAGATCGGAGCCGCCTTGAGGATTGGCTCTCCAACGAAGTATGGCGAACCATACCACAGTGAAGGTAGAGAACTCATCATTTCTAATCTCTCTCGTAGCGAGCTATTATCCAATAGGAGTGAGTATACATGGAGAATGGTCGAGTTCTTTTCAGGCGCATTTAAGGAGGAGCCACTCCCCGATGATGTGCGACGATCTTGTATTGAAGAAGTATTCCAGGTGGTCGAAAAAGATCTAGTGGTGGCATCATCATTTTCTGTTTTTCATGTCGACATATTGGAAGTGGTTGACCACGTGCTTGAGTCTGCTGCCGTTGCCTTCCTCGACGATGCGATATCATCAATCGAGGGTTTGGAGAAAACCCACTTTTGTTTTACTGGGCATATACGTTTTGTAGATAAAGAACTATCAGACCCAATTGTTGGCCAATTTCAAGAAGATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

22.77

Weight (kDa)

4.78

Isoelectric Point (pI)

44.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 578
AccI GTMKAC 3 cut(s) 150, 281, 426
AciI CCGC 1 cut(s) 168
AcoI YGGCCR 1 cut(s) 580
AcvI CACGTG 1 cut(s) 451
AfiI CCNNNNNNNGG 4 cut(s) 111, 116, 174, 578
AgsI TTSAA 3 cut(s) 44, 362, 590
AjnI CCWGG 1 cut(s) 372
AluBI AGCT 1 cut(s) 259
AluI AGCT 1 cut(s) 259
Alw21I GWGCWC 1 cut(s) 12
AoxI GGCC 1 cut(s) 580
ApeKI GCWGC 1 cut(s) 464
ArsI GACNNNNNNTTYG 2 cut(s) 132, 164
AspLEI GCGC 1 cut(s) 314
BalI TGGCCA 1 cut(s) 582
BbrPI CACGTG 1 cut(s) 451
Bbv12I GWGCWC 1 cut(s) 12
BbvI GCAGC 1 cut(s) 451
BceAI ACGGC 1 cut(s) 452
BciT130I CCWGG 1 cut(s) 374
BfaI CTAG 2 cut(s) 21, 392
BglII AGATCT 1 cut(s) 388
BisI GCNGC 2 cut(s) 168, 465
BlsI GCNGC 2 cut(s) 169, 466
Bme1390I CCNGG 1 cut(s) 374
BmiI GGNNCC 2 cut(s) 166, 327
BmrFI CCNGG 1 cut(s) 374
BmrI ACTGGG 1 cut(s) 543
BmsI GCATC 2 cut(s) 410, 475
BmuI ACTGGG 1 cut(s) 543
BpuEI CTTGAG 2 cut(s) 193, 476
BsaAI YACGTR 1 cut(s) 451
BsaJI CCNNGG 1 cut(s) 110
Bsc4I CCNNNNNNNGG 4 cut(s) 111, 116, 174, 578
Bse1I ACTGG 1 cut(s) 538
BseBI CCWGG 1 cut(s) 374
BseDI CCNNGG 1 cut(s) 110
BseLI CCNNNNNNNGG 4 cut(s) 111, 116, 174, 578
BseNI ACTGG 1 cut(s) 538
BseRI GAGGAG 1 cut(s) 338
BseXI GCAGC 1 cut(s) 451
BshFI GGCC 1 cut(s) 582
BsiHKAI GWGCWC 1 cut(s) 12
BslI CCNNNNNNNGG 4 cut(s) 111, 116, 174, 578
BsnI GGCC 1 cut(s) 582
Bsp1286I GDGCHC 1 cut(s) 12
Bsp143I GATC 4 cut(s) 135, 159, 350, 388
BspACI CCGC 1 cut(s) 168
BspANI GGCC 1 cut(s) 582
BspHI TCATGA 1 cut(s) 599
BspLI GGNNCC 2 cut(s) 166, 327
BsrI ACTGG 1 cut(s) 538
BssECI CCNNGG 1 cut(s) 110
BssMI GATC 4 cut(s) 135, 159, 350, 388
BssNAI GTATAC 1 cut(s) 282
BssT1I CCWWGG 1 cut(s) 110
Bst1107I GTATAC 1 cut(s) 282
Bst2UI CCWGG 1 cut(s) 374
Bst4CI ACNGT 1 cut(s) 215
BstBAI YACGTR 1 cut(s) 451
BstC8I GCNNGC 1 cut(s) 257
BstDEI CTNAG 1 cut(s) 156
BstHHI GCGC 1 cut(s) 314
BstKTI GATC 4 cut(s) 138, 162, 353, 391
BstMBI GATC 4 cut(s) 135, 159, 350, 388
BstMWI GCNNNNNNNGC 1 cut(s) 470
BstNI CCWGG 1 cut(s) 374
BstSCI CCNGG 1 cut(s) 372
BstV1I GCAGC 1 cut(s) 451
BstX2I RGATCY 1 cut(s) 388
BstYI RGATCY 1 cut(s) 388
BstZ17I GTATAC 1 cut(s) 282
BsuRI GGCC 1 cut(s) 582
BtsIMutI CAGTG 1 cut(s) 220
Cac8I GCNNGC 1 cut(s) 257
CciI TCATGA 1 cut(s) 599
CfoI GCGC 1 cut(s) 314
CviAII CATG 4 cut(s) 52, 285, 422, 600
CviJI RGCY 5 cut(s) 167, 183, 259, 328, 582
CviKI_1 RGCY 5 cut(s) 167, 183, 259, 328, 582
DdeI CTNAG 1 cut(s) 156
DpnI GATC 4 cut(s) 137, 161, 352, 390
DpnII GATC 4 cut(s) 135, 159, 350, 388
EaeI YGGCCR 1 cut(s) 580
Eco130I CCWWGG 1 cut(s) 110
Eco32I GATATC 1 cut(s) 492
Eco72I CACGTG 1 cut(s) 451
EcoRII CCWGG 1 cut(s) 372
EcoRV GATATC 1 cut(s) 492
EcoT14I CCWWGG 1 cut(s) 110
ErhI CCWWGG 1 cut(s) 110
FaeI CATG 4 cut(s) 55, 288, 425, 603
FatI CATG 4 cut(s) 51, 284, 421, 599
FblI GTMKAC 3 cut(s) 150, 281, 426
Fnu4HI GCNGC 2 cut(s) 168, 465
Fsp4HI GCNGC 2 cut(s) 168, 465
FspBI CTAG 2 cut(s) 21, 392
GlaI GCGC 1 cut(s) 313
GluI GCNGC 2 cut(s) 168, 465
HaeIII GGCC 1 cut(s) 582
HhaI GCGC 1 cut(s) 314
Hin1II CATG 4 cut(s) 55, 288, 425, 603
Hin6I GCGC 1 cut(s) 312
HinP1I GCGC 1 cut(s) 312
HincII GTYRAC 2 cut(s) 427, 445
HindII GTYRAC 2 cut(s) 427, 445
HinfI GANTC 2 cut(s) 458, 596
Hpy166II GTNNAC 4 cut(s) 151, 282, 427, 445
Hpy188I TCNGA 3 cut(s) 135, 164, 568
Hpy188III TCNNGA 4 cut(s) 21, 76, 590, 600
Hpy8I GTNNAC 4 cut(s) 151, 282, 427, 445
Hpy99I CGWCG 2 cut(s) 351, 485
HpyAV CCTTC 2 cut(s) 212, 484
HpyCH4III ACNGT 1 cut(s) 215
HpyCH4IV ACGT 2 cut(s) 450, 544
HpyF10VI GCNNNNNNNGC 1 cut(s) 470
HpyF3I CTNAG 1 cut(s) 156
HpySE526I ACGT 2 cut(s) 450, 544
Hsp92II CATG 4 cut(s) 55, 288, 425, 603
HspAI GCGC 1 cut(s) 312
Kzo9I GATC 4 cut(s) 135, 159, 350, 388
LmnI GCTCC 2 cut(s) 164, 325
LpnPI CCDG 4 cut(s) 294, 359, 386, 519
Lsp1109I GCAGC 1 cut(s) 451
LweI GCATC 2 cut(s) 410, 475
MaeI CTAG 2 cut(s) 21, 392
MaeII ACGT 2 cut(s) 450, 544
MalI GATC 4 cut(s) 137, 161, 352, 390
MboI GATC 4 cut(s) 135, 159, 350, 388
MboII GAAGA 1 cut(s) 374
MfeI CAATTG 1 cut(s) 573
MflI RGATCY 1 cut(s) 388
MhlI GDGCHC 1 cut(s) 12
MlsI TGGCCA 1 cut(s) 582
MluCI AATT 2 cut(s) 573, 584
MluNI TGGCCA 1 cut(s) 582
MlyI GAGTC 1 cut(s) 467
MmeI TCCRAC 1 cut(s) 212
MnlI CCTC 6 cut(s) 110, 115, 168, 316, 488, 496
Mox20I TGGCCA 1 cut(s) 582
MscI TGGCCA 1 cut(s) 582
MseI TTAA 1 cut(s) 318
Msp20I TGGCCA 1 cut(s) 582
MspR9I CCNGG 1 cut(s) 374
MunI CAATTG 1 cut(s) 573
MvaI CCWGG 1 cut(s) 374
MwoI GCNNNNNNNGC 1 cut(s) 470
NdeII GATC 4 cut(s) 135, 159, 350, 388
NlaIII CATG 4 cut(s) 55, 288, 425, 603
NlaIV GGNNCC 2 cut(s) 166, 327
PagI TCATGA 1 cut(s) 599
PfeI GAWTC 1 cut(s) 596
PflMI CCANNNNNTGG 1 cut(s) 578
PkrI GCNGC 2 cut(s) 169, 466
PleI GAGTC 1 cut(s) 466
PmaCI CACGTG 1 cut(s) 451
PmlI CACGTG 1 cut(s) 451
PpsI GAGTC 1 cut(s) 466
Ppu21I YACGTR 1 cut(s) 451
Psp6I CCWGG 1 cut(s) 372
PspCI CACGTG 1 cut(s) 451
PspGI CCWGG 1 cut(s) 372
PspN4I GGNNCC 2 cut(s) 166, 327
PsuI RGATCY 1 cut(s) 388
SalI GTCGAC 1 cut(s) 425
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 2 cut(s) 168, 465
Sau3AI GATC 4 cut(s) 135, 159, 350, 388
SchI GAGTC 1 cut(s) 467
ScrFI CCNGG 1 cut(s) 374
SduI GDGCHC 1 cut(s) 12
SetI ASST 6 cut(s) 150, 223, 261, 378, 453, 547
SfaNI GCATC 2 cut(s) 410, 475
SmlI CTYRAG 2 cut(s) 172, 455
SmoI CTYRAG 2 cut(s) 172, 455
Sse9I AATT 2 cut(s) 573, 584
SsiI CCGC 1 cut(s) 168
SspI AATATT 1 cut(s) 68
SspMI CTAG 2 cut(s) 21, 392
StyD4I CCNGG 1 cut(s) 372
StyI CCWWGG 1 cut(s) 110
TaaI ACNGT 1 cut(s) 215
TaiI ACGT 2 cut(s) 453, 547
TaqI TCGA 7 cut(s) 75, 138, 297, 381, 426, 480, 501
TasI AATT 2 cut(s) 573, 584
TauI GCSGC 1 cut(s) 170
TfiI GAWTC 1 cut(s) 596
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TscAI CASTG 1 cut(s) 220
TseI GCWGC 1 cut(s) 464
TspDTI ATGAA 3 cut(s) 60, 410, 588
TspRI CASTG 1 cut(s) 220
Van91I CCANNNNNTGG 1 cut(s) 578
XbaI TCTAGA 1 cut(s) 20
XmiI GTMKAC 3 cut(s) 150, 281, 426
XspI CTAG 2 cut(s) 21, 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.