Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005112.1

Orthogroup ID

OG0016345

Physical Location & Seq

Genomic Coordinates Reverse (-)

1813 .. 11080

Gene Structure 9268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005112.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

atgttgtttgagaaatattcattcgagagtaaagtgtggcatacaagcgaacccaaccccaggggaggcgaggacttggttctgatcgaaataaaggtctacactaagatcggagccgccttgaggattggttctccaacgaagtatggcgaaccataccacagtgaaggtagagaactcatcatttctaatctctctcgtagcgagctattatccaataagagtgagtatacatggagaatggtcgagttcttttcaggcacatttaaggaggagccactccccgatgatgtgcgacgatcttgtattgaagaagtattccgggtggtcgaaaaagatctagtggtggcctcatcattttctgttattcatgtcgacatattggaagtggttgaccacgtgcttgagtctgctgccgttgcctttctcgacgatgcgatatcatcaatcgagggtttggagaaagtgagagttgatagctctttcctggggttagaagactcttgtgctatttgtatggaggacctaattgacagagacggcaagaaacaatttaaacctaagaggaagagcaagaggctgcttggatttcaaagcctcagcaccaccattgctaaaaggccaagaaaagagccgccccgtttgaggatactaaatagccgggcaattgaggcggcagagaaggaaaggccagttccagacattaggagtggagacgttgtgcaaattaaactggaggttcctgaaaacaagcgtaggttgtctatctataaaggtatcgttatttcaaagcaaaatgctggcattcatacaacatttcgcattcggaggattattgctggcataggggttgagattgttttccctctatactcaccgaacattaaggagttgaaggtacttagtcataggaaggtcagaagggcaaggctgtactatttgagagacaaacttcctaggttctcgactttcaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L19

Protein Analysis

325

Amino Acids

37.25

Weight (kDa)

9.44

Isoelectric Point (pI)

56.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016345)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g20142 FvH4_5g20161 FvH4_5g20170
rosa_laevigata	RLG00000003397 RLG00000003399
rosa_multiflora	Rmu_sc0005112.1_g000002 Rmu_sc0005112.1_g000003 Rmu_sc0009349.1_g000015
rosa_samantha	Rh7AG218900 Rh7AG219200 Rh7BG215400 Rh7CG231900 Rh7CG232100 Rh7DG226300 Rh7DG226500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	99, 230, 375
AciI	CCGC	3 cut(s)	117, 635, 674
AcvI	CACGTG	1 cut(s)	400
AfaI	GTAC	2 cut(s)	900, 935
AfiI	CCNNNNNNNGG	4 cut(s)	60, 65, 123, 645
AgsI	TTSAA	5 cut(s)	311, 593, 789, 895, 973
AjnI	CCWGG	2 cut(s)	59, 486
AluBI	AGCT	2 cut(s)	208, 480
AluI	AGCT	2 cut(s)	208, 480
Alw26I	GTCTC	3 cut(s)	531, 708, 939
AoxI	GGCC	3 cut(s)	348, 620, 689
ApeKI	GCWGC	2 cut(s)	413, 580
ArsI	GACNNNNNNTTYG	2 cut(s)	81, 113
AspA2I	CCTAGG	1 cut(s)	956
AspS9I	GGNCC	1 cut(s)	523
AsuC2I	CCSGG	2 cut(s)	323, 662
AsuHPI	GGTGA	1 cut(s)	867
AvaII	GGWCC	1 cut(s)	523
AvrII	CCTAGG	1 cut(s)	956
BbrPI	CACGTG	1 cut(s)	400
BbsI	GAAGAC	1 cut(s)	504
BbvCI	CCTCAGC	1 cut(s)	599
BbvI	GCAGC	2 cut(s)	400, 567
BceAI	ACGGC	2 cut(s)	401, 556
BciT130I	CCWGG	2 cut(s)	61, 488
BciVI	GTATCC	1 cut(s)	642
BcnI	CCSGG	2 cut(s)	323, 662
BcoDI	GTCTC	3 cut(s)	531, 708, 939
BfaI	CTAG	2 cut(s)	341, 957
BfuI	GTATCC	1 cut(s)	642
BglII	AGATCT	1 cut(s)	337
BisI	GCNGC	5 cut(s)	117, 414, 581, 635, 675
BlnI	CCTAGG	1 cut(s)	956
BlsI	GCNGC	5 cut(s)	118, 415, 582, 636, 676
Bme1390I	CCNGG	4 cut(s)	61, 323, 488, 662
Bme18I	GGWCC	1 cut(s)	523
BmgT120I	GGNCC	1 cut(s)	523
BmiI	GGNNCC	3 cut(s)	115, 276, 741
BmrFI	CCNGG	4 cut(s)	61, 323, 488, 662
BmsI	GCATC	1 cut(s)	424
BpiI	GAAGAC	1 cut(s)	504
BpmI	CTGGAG	1 cut(s)	755
Bpu10I	CCTNAGC	1 cut(s)	599
BpuEI	CTTGAG	2 cut(s)	142, 425
BpuMI	CCSGG	2 cut(s)	323, 662
BsaAI	YACGTR	1 cut(s)	400
BsaJI	CCNNGG	4 cut(s)	59, 60, 487, 956
BsaXI	ACNNNNNCTCC	2 cut(s)	705, 735
Bsc4I	CCNNNNNNNGG	4 cut(s)	60, 65, 123, 645
Bse1I	ACTGG	2 cut(s)	692, 738
Bse3DI	GCAATG	1 cut(s)	609
BseBI	CCWGG	2 cut(s)	61, 488
BseDI	CCNNGG	4 cut(s)	59, 60, 487, 956
BseLI	CCNNNNNNNGG	4 cut(s)	60, 65, 123, 645
BseMI	GCAATG	1 cut(s)	609
BseMII	CTCAG	1 cut(s)	613
BseNI	ACTGG	2 cut(s)	692, 738
BseRI	GAGGAG	1 cut(s)	287
BseXI	GCAGC	2 cut(s)	400, 567
BshFI	GGCC	3 cut(s)	350, 622, 691
BsiSI	CCGG	2 cut(s)	322, 661
BslI	CCNNNNNNNGG	4 cut(s)	60, 65, 123, 645
BsmAI	GTCTC	3 cut(s)	531, 708, 939
BsmBI	CGTCTC	2 cut(s)	531, 708
BsmI	GAATGC	2 cut(s)	804, 822
BsnI	GGCC	3 cut(s)	350, 622, 691
Bsp143I	GATC	4 cut(s)	84, 108, 299, 337
BspACI	CCGC	3 cut(s)	117, 635, 674
BspANI	GGCC	3 cut(s)	350, 622, 691
BspCNI	CTCAG	1 cut(s)	612
BspLI	GGNNCC	3 cut(s)	115, 276, 741
BspQI	GCTCTTC	1 cut(s)	563
BsrDI	GCAATG	1 cut(s)	609
BsrI	ACTGG	2 cut(s)	692, 738
BssECI	CCNNGG	4 cut(s)	59, 60, 487, 956
BssMI	GATC	4 cut(s)	84, 108, 299, 337
BssNAI	GTATAC	1 cut(s)	231
BssT1I	CCWWGG	1 cut(s)	956
Bst1107I	GTATAC	1 cut(s)	231
Bst2UI	CCWGG	2 cut(s)	61, 488
Bst4CI	ACNGT	1 cut(s)	164
Bst6I	CTCTTC	1 cut(s)	563
BstBAI	YACGTR	1 cut(s)	400
BstC8I	GCNNGC	3 cut(s)	206, 802, 841
BstDEI	CTNAG	4 cut(s)	105, 561, 599, 902
BstKTI	GATC	4 cut(s)	87, 111, 302, 340
BstMAI	GTCTC	3 cut(s)	531, 708, 939
BstMBI	GATC	4 cut(s)	84, 108, 299, 337
BstMWI	GCNNNNNNNGC	2 cut(s)	419, 671
BstNI	CCWGG	2 cut(s)	61, 488
BstSCI	CCNGG	4 cut(s)	59, 321, 486, 660
BstV1I	GCAGC	2 cut(s)	400, 567
BstV2I	GAAGAC	1 cut(s)	504
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
BstZ17I	GTATAC	1 cut(s)	231
BsuI	GTATCC	1 cut(s)	642
BsuRI	GGCC	3 cut(s)	350, 622, 691
BtsIMutI	CAGTG	1 cut(s)	169
Cac8I	GCNNGC	3 cut(s)	206, 802, 841
Cfr13I	GGNCC	1 cut(s)	523
Csp6I	GTAC	2 cut(s)	899, 934
CviAII	CATG	2 cut(s)	234, 371
CviQI	GTAC	2 cut(s)	899, 934
DdeI	CTNAG	4 cut(s)	105, 561, 599, 902
DpnI	GATC	4 cut(s)	86, 110, 301, 339
DpnII	GATC	4 cut(s)	84, 108, 299, 337
DraI	TTTAAA	1 cut(s)	556
Eam1104I	CTCTTC	1 cut(s)	563
EarI	CTCTTC	1 cut(s)	563
Eco130I	CCWWGG	1 cut(s)	956
Eco32I	GATATC	1 cut(s)	441
Eco47I	GGWCC	1 cut(s)	523
Eco72I	CACGTG	1 cut(s)	400
EcoO109I	RGGNCCY	1 cut(s)	523
EcoRII	CCWGG	2 cut(s)	59, 486
EcoRV	GATATC	1 cut(s)	441
EcoT14I	CCWWGG	1 cut(s)	956
ErhI	CCWWGG	1 cut(s)	956
Esp3I	CGTCTC	2 cut(s)	531, 708
FaeI	CATG	2 cut(s)	237, 374
FatI	CATG	2 cut(s)	233, 370
FblI	GTMKAC	3 cut(s)	99, 230, 375
Fnu4HI	GCNGC	5 cut(s)	117, 414, 581, 635, 675
Fsp4HI	GCNGC	5 cut(s)	117, 414, 581, 635, 675
FspBI	CTAG	2 cut(s)	341, 957
GluI	GCNGC	5 cut(s)	117, 414, 581, 635, 675
GsuI	CTGGAG	1 cut(s)	755
HaeIII	GGCC	3 cut(s)	350, 622, 691
HapII	CCGG	2 cut(s)	322, 661
Hin1II	CATG	2 cut(s)	237, 374
HincII	GTYRAC	2 cut(s)	376, 394
HindII	GTYRAC	2 cut(s)	376, 394
HinfI	GANTC	2 cut(s)	407, 500
HpaII	CCGG	2 cut(s)	322, 661
HphI	GGTGA	1 cut(s)	867
Hpy166II	GTNNAC	4 cut(s)	100, 231, 376, 394
Hpy188I	TCNGA	4 cut(s)	84, 113, 828, 920
Hpy188III	TCNNGA	5 cut(s)	25, 428, 698, 743, 964
Hpy8I	GTNNAC	4 cut(s)	100, 231, 376, 394
Hpy99I	CGWCG	2 cut(s)	300, 434
HpyAV	CCTTC	5 cut(s)	161, 676, 889, 907, 915
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4IV	ACGT	2 cut(s)	399, 717
HpyCH4V	TGCA	1 cut(s)	724
HpyF10VI	GCNNNNNNNGC	2 cut(s)	419, 671
HpyF3I	CTNAG	4 cut(s)	105, 561, 599, 902
HpySE526I	ACGT	2 cut(s)	399, 717
Hsp92II	CATG	2 cut(s)	237, 374
Kzo9I	GATC	4 cut(s)	84, 108, 299, 337
LguI	GCTCTTC	1 cut(s)	563
LmnI	GCTCC	2 cut(s)	113, 274
Lsp1109I	GCAGC	2 cut(s)	400, 567
LweI	GCATC	1 cut(s)	424
MaeI	CTAG	2 cut(s)	341, 957
MaeII	ACGT	2 cut(s)	399, 717
MalI	GATC	4 cut(s)	86, 110, 301, 339
MboI	GATC	4 cut(s)	84, 108, 299, 337
MboII	GAAGA	3 cut(s)	323, 509, 580
MfeI	CAATTG	1 cut(s)	666
MflI	RGATCY	1 cut(s)	337
MluCI	AATT	4 cut(s)	528, 551, 666, 726
MlyI	GAGTC	2 cut(s)	416, 494
MmeI	TCCRAC	1 cut(s)	161
MseI	TTAA	4 cut(s)	267, 555, 729, 885
MspI	CCGG	2 cut(s)	322, 661
MspR9I	CCNGG	4 cut(s)	61, 323, 488, 662
MunI	CAATTG	1 cut(s)	666
Mva1269I	GAATGC	2 cut(s)	804, 822
MvaI	CCWGG	2 cut(s)	61, 488
MwoI	GCNNNNNNNGC	2 cut(s)	419, 671
NciI	CCSGG	2 cut(s)	323, 662
NdeII	GATC	4 cut(s)	84, 108, 299, 337
NlaIII	CATG	2 cut(s)	237, 374
NlaIV	GGNNCC	3 cut(s)	115, 276, 741
PasI	CCCWGGG	1 cut(s)	60
PciSI	GCTCTTC	1 cut(s)	563
PctI	GAATGC	2 cut(s)	804, 822
PkrI	GCNGC	5 cut(s)	118, 415, 582, 636, 676
PleI	GAGTC	2 cut(s)	415, 494
PmaCI	CACGTG	1 cut(s)	400
PmlI	CACGTG	1 cut(s)	400
PpsI	GAGTC	2 cut(s)	415, 494
Ppu21I	YACGTR	1 cut(s)	400
PpuMI	RGGWCCY	1 cut(s)	523
Psp5II	RGGWCCY	1 cut(s)	523
Psp6I	CCWGG	2 cut(s)	59, 486
PspCI	CACGTG	1 cut(s)	400
PspGI	CCWGG	2 cut(s)	59, 486
PspN4I	GGNNCC	3 cut(s)	115, 276, 741
PspPI	GGNCC	1 cut(s)	523
PspPPI	RGGWCCY	1 cut(s)	523
PsuI	RGATCY	1 cut(s)	337
RsaI	GTAC	2 cut(s)	900, 935
RsaNI	GTAC	2 cut(s)	899, 934
SalI	GTCGAC	1 cut(s)	374
SapI	GCTCTTC	1 cut(s)	563
SaqAI	TTAA	4 cut(s)	267, 555, 729, 885
SatI	GCNGC	5 cut(s)	117, 414, 581, 635, 675
Sau3AI	GATC	4 cut(s)	84, 108, 299, 337
Sau96I	GGNCC	1 cut(s)	523
SchI	GAGTC	2 cut(s)	416, 494
ScrFI	CCNGG	4 cut(s)	61, 323, 488, 662
SfaNI	GCATC	1 cut(s)	424
SinI	GGWCC	1 cut(s)	523
SmlI	CTYRAG	2 cut(s)	121, 404
SmoI	CTYRAG	2 cut(s)	121, 404
Sse9I	AATT	4 cut(s)	528, 551, 666, 726
SsiI	CCGC	3 cut(s)	117, 635, 674
SspI	AATATT	1 cut(s)	17
SspMI	CTAG	2 cut(s)	341, 957
StyD4I	CCNGG	4 cut(s)	59, 321, 486, 660
StyI	CCWWGG	1 cut(s)	956
TaaI	ACNGT	1 cut(s)	164
TaiI	ACGT	2 cut(s)	402, 720
TaqI	TCGA	8 cut(s)	24, 87, 246, 330, 375, 429, 450, 965
TasI	AATT	4 cut(s)	528, 551, 666, 726
TatI	WGTACW	1 cut(s)	933
TauI	GCSGC	3 cut(s)	119, 637, 677
Tru1I	TTAA	4 cut(s)	267, 555, 729, 885
Tru9I	TTAA	4 cut(s)	267, 555, 729, 885
TscAI	CASTG	1 cut(s)	169
TseI	GCWGC	2 cut(s)	413, 580
TspDTI	ATGAA	3 cut(s)	9, 359, 797
TspRI	CASTG	1 cut(s)	169
VpaK11BI	GGWCC	1 cut(s)	523
XmaJI	CCTAGG	1 cut(s)	956
XmiI	GTMKAC	3 cut(s)	99, 230, 375
XspI	CTAG	2 cut(s)	341, 957

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.