Rh7AG218900

RING-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0016345
Physical Location & Seq
Forward (+)
20364918 .. 20365959
1042 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG218900.1

Sequence Viewer

Length: 777 bp
ATGTTGTTTGAGAAATATTCATTCGAGAGTAAAGTGTGGCATACAAGAGAACCCAACCCAAGGGGAGGCGAGGACTTGGTTCTGATCGAAATAAAGGTCTACACTAAGATCGGAGCCGCCTTGAGGATTGGTTCTCCAACGAAGTATGGCGAACCATACCACAGTGAAGGTAGAGAACTCATCATTTCTAATCTCTCTCGTAGCGAGCTATTATCCAATAAGAGTGAGTATACATGGAGAATGGTCGAGTTCTTTTCAGGGGCATTTAAGGAGGAGCCACTCCCCGATGATGTGCGACGATCTTGTATTGAAGAAGTATTCCGGGTGGTCGAAAAAGATCTAGTGGTGGCCTCATCATTTTCTGTTATTCATGTCGACATATTGGAAGTGGTTGACCACGTGCTTGAGTCTGCTGCAGTTGCCTTTCTAGACGATGCGATATCATCAATCGAGGGTTTGGAGAAAGTGAGAGTTGATAGCTGTTTCTTGGGGTTAGAAGACTCTTGTGCTATTCGTACGGAGGACCTAATTGATAGAGAAGGCAAGAAACAATTTAAACAACCTAAGAGGAAGAGCAAGAGGCTGCTTGGATTTCAAAGCCTCAGCACCACCATTGCTAAAAGGCCAAGAAAAGAGCCGCCCCGTTTGAGGGTAATTGCTCGCTTGCCCTGCTCACACCATTTTCATGGAGATTGCATTGTCAAGTGGCTCAAAAACAATCATGTCTGTCCCCTGTGCCGATGCCAAGTGGGCGGTCAGCCATCGCAAAAAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

258

Amino Acids

29.41

Weight (kDa)

8.37

Isoelectric Point (pI)

50.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 219 - 247 3e-10 Ring finger domain
zf-rbx1 PF12678 219 - 247 5.9e-10 RING-H2 zinc finger domain
zf-C3HC4_2 PF13923 222 - 246 2.5e-06 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 222 - 246 1.3e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 99, 230, 375
AciI CCGC 3 cut(s) 117, 638, 753
AcvI CACGTG 1 cut(s) 400
AfaI GTAC 1 cut(s) 517
AfiI CCNNNNNNNGG 5 cut(s) 60, 65, 123, 648, 649
AgsI TTSAA 2 cut(s) 311, 596
AluBI AGCT 2 cut(s) 208, 480
AluI AGCT 2 cut(s) 208, 480
AoxI GGCC 2 cut(s) 348, 623
ApeKI GCWGC 2 cut(s) 413, 583
ArsI GACNNNNNNTTYG 2 cut(s) 81, 113
AspS9I GGNCC 1 cut(s) 523
AsuC2I CCSGG 1 cut(s) 323
AvaII GGWCC 1 cut(s) 523
BbrPI CACGTG 1 cut(s) 400
BbsI GAAGAC 1 cut(s) 504
BbvCI CCTCAGC 1 cut(s) 602
BbvI GCAGC 2 cut(s) 400, 570
BccI CCATC 1 cut(s) 769
BcnI CCSGG 1 cut(s) 323
BfaI CTAG 2 cut(s) 341, 428
BfmI CTRYAG 1 cut(s) 414
BglI GCCNNNNNGGC 1 cut(s) 750
BglII AGATCT 1 cut(s) 337
BisI GCNGC 4 cut(s) 117, 414, 584, 638
BlsI GCNGC 4 cut(s) 118, 415, 585, 639
Bme1390I CCNGG 1 cut(s) 323
Bme18I GGWCC 1 cut(s) 523
BmgT120I GGNCC 1 cut(s) 523
BmiI GGNNCC 2 cut(s) 115, 276
BmrFI CCNGG 1 cut(s) 323
BmsI GCATC 2 cut(s) 424, 731
BpiI GAAGAC 1 cut(s) 504
Bpu10I CCTNAGC 1 cut(s) 602
BpuEI CTTGAG 2 cut(s) 142, 425
BpuMI CCSGG 1 cut(s) 323
BsaAI YACGTR 1 cut(s) 400
BsaJI CCNNGG 1 cut(s) 59
Bsc4I CCNNNNNNNGG 5 cut(s) 60, 65, 123, 648, 649
Bse3DI GCAATG 1 cut(s) 612
BseDI CCNNGG 1 cut(s) 59
BseLI CCNNNNNNNGG 5 cut(s) 60, 65, 123, 648, 649
BseMI GCAATG 1 cut(s) 612
BseMII CTCAG 1 cut(s) 616
BseRI GAGGAG 1 cut(s) 287
BseXI GCAGC 2 cut(s) 400, 570
BshFI GGCC 2 cut(s) 350, 625
BsiSI CCGG 1 cut(s) 322
BsiWI CGTACG 1 cut(s) 515
BslFI GGGAC 1 cut(s) 714
BslI CCNNNNNNNGG 5 cut(s) 60, 65, 123, 648, 649
BsmFI GGGAC 1 cut(s) 714
BsnI GGCC 2 cut(s) 350, 625
Bsp143I GATC 4 cut(s) 84, 108, 299, 337
BspACI CCGC 3 cut(s) 117, 638, 753
BspANI GGCC 2 cut(s) 350, 625
BspCNI CTCAG 1 cut(s) 615
BspLI GGNNCC 2 cut(s) 115, 276
BspMAI CTGCAG 1 cut(s) 418
BspQI GCTCTTC 1 cut(s) 566
BsrDI GCAATG 1 cut(s) 612
BssECI CCNNGG 1 cut(s) 59
BssMI GATC 4 cut(s) 84, 108, 299, 337
BssNAI GTATAC 1 cut(s) 231
BssT1I CCWWGG 1 cut(s) 59
Bst1107I GTATAC 1 cut(s) 231
Bst4CI ACNGT 1 cut(s) 164
Bst6I CTCTTC 1 cut(s) 566
BstBAI YACGTR 1 cut(s) 400
BstC8I GCNNGC 3 cut(s) 206, 661, 665
BstDEI CTNAG 3 cut(s) 105, 564, 602
BstKTI GATC 4 cut(s) 87, 111, 302, 340
BstMBI GATC 4 cut(s) 84, 108, 299, 337
BstMWI GCNNNNNNNGC 3 cut(s) 419, 669, 750
BstSCI CCNGG 1 cut(s) 321
BstSFI CTRYAG 1 cut(s) 414
BstV1I GCAGC 2 cut(s) 400, 570
BstV2I GAAGAC 1 cut(s) 504
BstX2I RGATCY 1 cut(s) 337
BstXI CCANNNNNNTGG 1 cut(s) 686
BstYI RGATCY 1 cut(s) 337
BstZ17I GTATAC 1 cut(s) 231
BsuRI GGCC 2 cut(s) 350, 625
BtgZI GCGATG 1 cut(s) 747
BtsIMutI CAGTG 1 cut(s) 169
Cac8I GCNNGC 3 cut(s) 206, 661, 665
Cfr13I GGNCC 1 cut(s) 523
Csp6I GTAC 1 cut(s) 516
CviAII CATG 4 cut(s) 234, 371, 686, 722
CviQI GTAC 1 cut(s) 516
DdeI CTNAG 3 cut(s) 105, 564, 602
DpnI GATC 4 cut(s) 86, 110, 301, 339
DpnII GATC 4 cut(s) 84, 108, 299, 337
DraI TTTAAA 1 cut(s) 556
Eam1104I CTCTTC 1 cut(s) 566
EarI CTCTTC 1 cut(s) 566
Eco130I CCWWGG 1 cut(s) 59
Eco32I GATATC 1 cut(s) 441
Eco47I GGWCC 1 cut(s) 523
Eco72I CACGTG 1 cut(s) 400
EcoO109I RGGNCCY 1 cut(s) 523
EcoRV GATATC 1 cut(s) 441
EcoT14I CCWWGG 1 cut(s) 59
ErhI CCWWGG 1 cut(s) 59
FaeI CATG 4 cut(s) 237, 374, 689, 725
FaiI YATR 9 cut(s) 42, 147, 157, 231, 235, 372, 380, 687, 723
FaqI GGGAC 1 cut(s) 714
FatI CATG 4 cut(s) 233, 370, 685, 721
FblI GTMKAC 3 cut(s) 99, 230, 375
Fnu4HI GCNGC 4 cut(s) 117, 414, 584, 638
Fsp4HI GCNGC 4 cut(s) 117, 414, 584, 638
FspBI CTAG 2 cut(s) 341, 428
GluI GCNGC 4 cut(s) 117, 414, 584, 638
HaeIII GGCC 2 cut(s) 350, 625
HapII CCGG 1 cut(s) 322
Hin1II CATG 4 cut(s) 237, 374, 689, 725
HincII GTYRAC 2 cut(s) 376, 394
HindII GTYRAC 2 cut(s) 376, 394
HinfI GANTC 2 cut(s) 407, 500
HpaII CCGG 1 cut(s) 322
Hpy166II GTNNAC 4 cut(s) 100, 231, 376, 394
Hpy188I TCNGA 2 cut(s) 84, 113
Hpy188III TCNNGA 2 cut(s) 25, 428
Hpy8I GTNNAC 4 cut(s) 100, 231, 376, 394
Hpy99I CGWCG 1 cut(s) 300
HpyAV CCTTC 2 cut(s) 161, 533
HpyCH4III ACNGT 1 cut(s) 164
HpyCH4IV ACGT 1 cut(s) 399
HpyCH4V TGCA 2 cut(s) 416, 696
HpyF10VI GCNNNNNNNGC 3 cut(s) 419, 669, 750
HpyF3I CTNAG 3 cut(s) 105, 564, 602
HpySE526I ACGT 1 cut(s) 399
Hsp92II CATG 4 cut(s) 237, 374, 689, 725
Kzo9I GATC 4 cut(s) 84, 108, 299, 337
LguI GCTCTTC 1 cut(s) 566
LmnI GCTCC 2 cut(s) 113, 274
LpnPI CCDG 4 cut(s) 243, 335, 682, 746
Lsp1109I GCAGC 2 cut(s) 400, 570
LweI GCATC 2 cut(s) 424, 731
MaeI CTAG 2 cut(s) 341, 428
MaeII ACGT 1 cut(s) 399
MalI GATC 4 cut(s) 86, 110, 301, 339
MboI GATC 4 cut(s) 84, 108, 299, 337
MboII GAAGA 3 cut(s) 323, 509, 583
MflI RGATCY 1 cut(s) 337
MluCI AATT 3 cut(s) 528, 551, 654
MlyI GAGTC 2 cut(s) 416, 494
MmeI TCCRAC 1 cut(s) 161
MseI TTAA 2 cut(s) 267, 555
MslI CAYNNNNRTG 1 cut(s) 684
MspI CCGG 1 cut(s) 322
MspR9I CCNGG 1 cut(s) 323
MwoI GCNNNNNNNGC 3 cut(s) 419, 669, 750
NciI CCSGG 1 cut(s) 323
NdeII GATC 4 cut(s) 84, 108, 299, 337
NlaIII CATG 4 cut(s) 237, 374, 689, 725
NlaIV GGNNCC 2 cut(s) 115, 276
PciSI GCTCTTC 1 cut(s) 566
Pfl23II CGTACG 1 cut(s) 515
PkrI GCNGC 4 cut(s) 118, 415, 585, 639
PleI GAGTC 2 cut(s) 415, 494
PmaCI CACGTG 1 cut(s) 400
PmlI CACGTG 1 cut(s) 400
PpsI GAGTC 2 cut(s) 415, 494
Ppu21I YACGTR 1 cut(s) 400
PpuMI RGGWCCY 1 cut(s) 523
Psp5II RGGWCCY 1 cut(s) 523
PspCI CACGTG 1 cut(s) 400
PspLI CGTACG 1 cut(s) 515
PspN4I GGNNCC 2 cut(s) 115, 276
PspPI GGNCC 1 cut(s) 523
PspPPI RGGWCCY 1 cut(s) 523
PstI CTGCAG 1 cut(s) 418
PsuI RGATCY 1 cut(s) 337
RsaI GTAC 1 cut(s) 517
RsaNI GTAC 1 cut(s) 516
RseI CAYNNNNRTG 1 cut(s) 684
SalI GTCGAC 1 cut(s) 374
SapI GCTCTTC 1 cut(s) 566
SaqAI TTAA 2 cut(s) 267, 555
SatI GCNGC 4 cut(s) 117, 414, 584, 638
Sau3AI GATC 4 cut(s) 84, 108, 299, 337
Sau96I GGNCC 1 cut(s) 523
SchI GAGTC 2 cut(s) 416, 494
ScrFI CCNGG 1 cut(s) 323
SetI ASST 8 cut(s) 99, 172, 210, 402, 482, 528, 565, 776
SfaNI GCATC 2 cut(s) 424, 731
SfcI CTRYAG 1 cut(s) 414
SinI GGWCC 1 cut(s) 523
SmiMI CAYNNNNRTG 1 cut(s) 684
SmlI CTYRAG 2 cut(s) 121, 404
SmoI CTYRAG 2 cut(s) 121, 404
Sse9I AATT 3 cut(s) 528, 551, 654
SsiI CCGC 3 cut(s) 117, 638, 753
SspI AATATT 1 cut(s) 17
SspMI CTAG 2 cut(s) 341, 428
StyD4I CCNGG 1 cut(s) 321
StyI CCWWGG 1 cut(s) 59
TaaI ACNGT 1 cut(s) 164
TaiI ACGT 1 cut(s) 402
TaqI TCGA 6 cut(s) 24, 87, 246, 330, 375, 450
TasI AATT 3 cut(s) 528, 551, 654
TauI GCSGC 2 cut(s) 119, 640
Tru1I TTAA 2 cut(s) 267, 555
Tru9I TTAA 2 cut(s) 267, 555
TscAI CASTG 1 cut(s) 169
TseI GCWGC 2 cut(s) 413, 583
TspDTI ATGAA 3 cut(s) 9, 359, 674
TspGWI ACGGA 1 cut(s) 533
TspRI CASTG 1 cut(s) 169
VpaK11BI GGWCC 1 cut(s) 523
XbaI TCTAGA 1 cut(s) 427
XmiI GTMKAC 3 cut(s) 99, 230, 375
XspI CTAG 2 cut(s) 341, 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.