Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0016345

Physical Location & Seq

Genomic Coordinates Reverse (-)

48047660 .. 48048073

Gene Structure 414 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003397

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGTCGAGTTCTTTTCAAACGCATTTAAGGAGGAGCCACTTCCCAATGATGTGCGACGATCTTGTATTGAAGAAGTATTCCGGGTGGTCGAAAAATATCTAGTGGTGGCCTCATCATTTTCTGTTATTCATGTCGACATATTGGAAGTGGTAGACCACGTGCTTGAGTCTGCTGCCGTTGCCTTTCTAGACGATGCGATATCATCAATCGAGGGTTTGGAGAAAGTGAGAGTTGATAGCTATTTCTTGGGGTTAGAAGACTGTTGTGCTATTTGTATGGAGGACCTAATTGATAGAGAAGGCAAGAACCAATTCAAACAACCTAGAGGAAGAGCAAGAGGCTGCTTGGATTACAAGCCCTCAGCACAACCATCGCTAAAAGGCCAAGGAAAGAGCCGCCCCCTTCGAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

138

Amino Acids

15.37

Weight (kDa)

5.1

Isoelectric Point (pI)

46.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016345)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g20142 FvH4_5g20161 FvH4_5g20170
rosa_laevigata	RLG00000003397 RLG00000003399
rosa_multiflora	Rmu_sc0005112.1_g000002 Rmu_sc0005112.1_g000003 Rmu_sc0009349.1_g000015
rosa_samantha	Rh7AG218900 Rh7AG219200 Rh7BG215400 Rh7CG231900 Rh7CG232100 Rh7DG226300 Rh7DG226500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	135, 153
AciI	CCGC	1 cut(s)	397
AcvI	CACGTG	1 cut(s)	160
AfiI	CCNNNNNNNGG	1 cut(s)	407
AgsI	TTSAA	3 cut(s)	18, 71, 316
AluBI	AGCT	1 cut(s)	240
AluI	AGCT	1 cut(s)	240
AoxI	GGCC	2 cut(s)	108, 382
ApeKI	GCWGC	2 cut(s)	173, 342
Asp700I	GAANNNNTTC	1 cut(s)	311
AspS9I	GGNCC	1 cut(s)	283
AsuC2I	CCSGG	1 cut(s)	83
AvaII	GGWCC	1 cut(s)	283
BbrPI	CACGTG	1 cut(s)	160
BbsI	GAAGAC	1 cut(s)	264
BbvCI	CCTCAGC	1 cut(s)	361
BbvI	GCAGC	2 cut(s)	160, 329
BccI	CCATC	1 cut(s)	379
BceAI	ACGGC	1 cut(s)	161
BcgI	CGANNNNNNTGC	2 cut(s)	354, 388
BcnI	CCSGG	1 cut(s)	83
BfaI	CTAG	3 cut(s)	101, 188, 324
BisI	GCNGC	3 cut(s)	174, 343, 397
BlsI	GCNGC	3 cut(s)	175, 344, 398
Bme1390I	CCNGG	1 cut(s)	83
Bme18I	GGWCC	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	283
BmiI	GGNNCC	1 cut(s)	36
BmrFI	CCNGG	1 cut(s)	83
BmsI	GCATC	1 cut(s)	184
BpiI	GAAGAC	1 cut(s)	264
Bpu10I	CCTNAGC	1 cut(s)	361
BpuEI	CTTGAG	1 cut(s)	185
BpuMI	CCSGG	1 cut(s)	83
BsaAI	YACGTR	1 cut(s)	160
BsaJI	CCNNGG	1 cut(s)	385
Bsc4I	CCNNNNNNNGG	1 cut(s)	407
BseDI	CCNNGG	1 cut(s)	385
BseLI	CCNNNNNNNGG	1 cut(s)	407
BseMII	CTCAG	1 cut(s)	375
BseRI	GAGGAG	1 cut(s)	47
BseXI	GCAGC	2 cut(s)	160, 329
BshFI	GGCC	2 cut(s)	110, 384
BsiSI	CCGG	1 cut(s)	82
BslI	CCNNNNNNNGG	1 cut(s)	407
BsnI	GGCC	2 cut(s)	110, 384
Bsp143I	GATC	1 cut(s)	59
BspACI	CCGC	1 cut(s)	397
BspANI	GGCC	2 cut(s)	110, 384
BspCNI	CTCAG	1 cut(s)	374
BspLI	GGNNCC	1 cut(s)	36
BspQI	GCTCTTC	1 cut(s)	325
BssECI	CCNNGG	1 cut(s)	385
BssMI	GATC	1 cut(s)	59
BssT1I	CCWWGG	1 cut(s)	385
Bst4CI	ACNGT	1 cut(s)	263
Bst6I	CTCTTC	1 cut(s)	325
BstBAI	YACGTR	1 cut(s)	160
BstDEI	CTNAG	1 cut(s)	361
BstKTI	GATC	1 cut(s)	62
BstMBI	GATC	1 cut(s)	59
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	81
BstV1I	GCAGC	2 cut(s)	160, 329
BstV2I	GAAGAC	1 cut(s)	264
BsuRI	GGCC	2 cut(s)	110, 384
BtgZI	GCGATG	1 cut(s)	357
Cfr13I	GGNCC	1 cut(s)	283
CviAII	CATG	1 cut(s)	131
CviJI	RGCY	7 cut(s)	37, 110, 240, 342, 358, 384, 396
CviKI_1	RGCY	7 cut(s)	37, 110, 240, 342, 358, 384, 396
DdeI	CTNAG	1 cut(s)	361
DpnI	GATC	1 cut(s)	61
DpnII	GATC	1 cut(s)	59
Eam1104I	CTCTTC	1 cut(s)	325
EarI	CTCTTC	1 cut(s)	325
Eco130I	CCWWGG	1 cut(s)	385
Eco32I	GATATC	1 cut(s)	201
Eco47I	GGWCC	1 cut(s)	283
Eco72I	CACGTG	1 cut(s)	160
EcoO109I	RGGNCCY	1 cut(s)	283
EcoRV	GATATC	1 cut(s)	201
EcoT14I	CCWWGG	1 cut(s)	385
ErhI	CCWWGG	1 cut(s)	385
FaeI	CATG	1 cut(s)	134
FaiI	YATR	3 cut(s)	132, 140, 278
FatI	CATG	1 cut(s)	130
FblI	GTMKAC	2 cut(s)	135, 153
Fnu4HI	GCNGC	3 cut(s)	174, 343, 397
Fsp4HI	GCNGC	3 cut(s)	174, 343, 397
FspBI	CTAG	3 cut(s)	101, 188, 324
GluI	GCNGC	3 cut(s)	174, 343, 397
HaeIII	GGCC	2 cut(s)	110, 384
HapII	CCGG	1 cut(s)	82
Hin1II	CATG	1 cut(s)	134
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HinfI	GANTC	1 cut(s)	167
HpaII	CCGG	1 cut(s)	82
Hpy166II	GTNNAC	2 cut(s)	136, 154
Hpy188III	TCNNGA	1 cut(s)	188
Hpy8I	GTNNAC	2 cut(s)	136, 154
Hpy99I	CGWCG	1 cut(s)	60
HpyAV	CCTTC	2 cut(s)	293, 413
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4IV	ACGT	1 cut(s)	159
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpyF3I	CTNAG	1 cut(s)	361
HpySE526I	ACGT	1 cut(s)	159
Hsp92II	CATG	1 cut(s)	134
Kzo9I	GATC	1 cut(s)	59
LguI	GCTCTTC	1 cut(s)	325
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	1 cut(s)	95
Lsp1109I	GCAGC	2 cut(s)	160, 329
LweI	GCATC	1 cut(s)	184
MaeI	CTAG	3 cut(s)	101, 188, 324
MaeII	ACGT	1 cut(s)	159
MalI	GATC	1 cut(s)	61
MboI	GATC	1 cut(s)	59
MboII	GAAGA	3 cut(s)	83, 269, 342
MluCI	AATT	2 cut(s)	288, 311
MlyI	GAGTC	1 cut(s)	176
MnlI	CCTC	8 cut(s)	25, 121, 205, 274, 320, 332, 370, 401
MroXI	GAANNNNTTC	1 cut(s)	311
MseI	TTAA	2 cut(s)	27, 412
MspI	CCGG	1 cut(s)	82
MspR9I	CCNGG	1 cut(s)	83
MwoI	GCNNNNNNNGC	1 cut(s)	179
NciI	CCSGG	1 cut(s)	83
NdeII	GATC	1 cut(s)	59
NlaIII	CATG	1 cut(s)	134
NlaIV	GGNNCC	1 cut(s)	36
PciSI	GCTCTTC	1 cut(s)	325
PdmI	GAANNNNTTC	1 cut(s)	311
PkrI	GCNGC	3 cut(s)	175, 344, 398
PleI	GAGTC	1 cut(s)	175
PmaCI	CACGTG	1 cut(s)	160
PmlI	CACGTG	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	175
Ppu21I	YACGTR	1 cut(s)	160
PpuMI	RGGWCCY	1 cut(s)	283
Psp5II	RGGWCCY	1 cut(s)	283
PspCI	CACGTG	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	36
PspPI	GGNCC	1 cut(s)	283
PspPPI	RGGWCCY	1 cut(s)	283
SalI	GTCGAC	1 cut(s)	134
SapI	GCTCTTC	1 cut(s)	325
SaqAI	TTAA	2 cut(s)	27, 412
SatI	GCNGC	3 cut(s)	174, 343, 397
Sau3AI	GATC	1 cut(s)	59
Sau96I	GGNCC	1 cut(s)	283
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	1 cut(s)	83
SetI	ASST	5 cut(s)	162, 242, 288, 325, 412
SfaNI	GCATC	1 cut(s)	184
SinI	GGWCC	1 cut(s)	283
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	2 cut(s)	288, 311
SsiI	CCGC	1 cut(s)	397
SspMI	CTAG	3 cut(s)	101, 188, 324
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	1 cut(s)	385
TaaI	ACNGT	1 cut(s)	263
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	5 cut(s)	6, 90, 135, 210, 406
TasI	AATT	2 cut(s)	288, 311
TauI	GCSGC	1 cut(s)	399
Tru1I	TTAA	2 cut(s)	27, 412
Tru9I	TTAA	2 cut(s)	27, 412
TseI	GCWGC	2 cut(s)	173, 342
TspDTI	ATGAA	1 cut(s)	119
VpaK11BI	GGWCC	1 cut(s)	283
XbaI	TCTAGA	1 cut(s)	187
XmiI	GTMKAC	2 cut(s)	135, 153
XmnI	GAANNNNTTC	1 cut(s)	311
XspI	CTAG	3 cut(s)	101, 188, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.