Rmu_sc0009349.1_g000015

RING-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009349.1
OG0016345
Physical Location & Seq
Reverse (-)
55235 .. 56008
774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009349.1_g000015.1.cds

Sequence Viewer

Length: 774 bp
atgttgtttgagaaatattcattcgagagtaaagtgtggcatacaagcgaacccaacccaaggggaggcgaggacttggttctgatcgaaataaaggtctacactaagatcggagccgccttgaggattggttctccaacgaagtatggcgaaccataccacagtgaaggtagagaactcatcatttctaatctctctcgtagcgagctattatccaataagagtgagtatacatggagaatggtcgagttcttttcaggcacatttaaggaggagccactccccgatgatgtgcgacgatcttgtattgaagaagtattccgggtggtcgaaaaagatctagtggtggcctcatcattttctgctattcatgtcgacatattggaagtggttgaccacgtgcttgagtctgctgccgttgcctttctagacgatgcgatatcatcaattgagggtttggagaaagtgagagttgatagctctttcctggggttagaagactcttgtgctatttgtatggaggacctaattgacagagacggcaagaaacaatttaaacctaagaggaagagcaagaggctgcttggatttcaaagcctcagcaccaccattgctaaaaggccaagaaaagagccgccccgtttgagggtaattgctcgcttgccctgctcacaccattttcatggagattgcattgtcaagtggctcaaaaacaatcatgtgattcatgtctgtcctctgtgcccagagccggccctgagggtagctagctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

257

Amino Acids

29.17

Weight (kDa)

6.76

Isoelectric Point (pI)

51.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 99, 230, 375
AciI CCGC 2 cut(s) 117, 635
AcvI CACGTG 1 cut(s) 400
AfiI CCNNNNNNNGG 6 cut(s) 60, 65, 123, 645, 646, 751
AgsI TTSAA 2 cut(s) 311, 593
AjnI CCWGG 1 cut(s) 486
AluBI AGCT 4 cut(s) 208, 480, 767, 771
AluI AGCT 4 cut(s) 208, 480, 767, 771
Alw26I GTCTC 1 cut(s) 531
AoxI GGCC 3 cut(s) 348, 620, 753
ApeKI GCWGC 2 cut(s) 413, 580
ArsI GACNNNNNNTTYG 2 cut(s) 81, 113
AspS9I GGNCC 2 cut(s) 523, 754
AsuC2I CCSGG 1 cut(s) 323
AsuNHI GCTAGC 1 cut(s) 767
AvaII GGWCC 1 cut(s) 523
AxyI CCTNAGG 1 cut(s) 758
BaeGI GKGCMC 1 cut(s) 746
BbrPI CACGTG 1 cut(s) 400
BbsI GAAGAC 1 cut(s) 504
BbvCI CCTCAGC 1 cut(s) 599
BbvI GCAGC 2 cut(s) 400, 567
BceAI ACGGC 2 cut(s) 401, 556
BciT130I CCWGG 1 cut(s) 488
BcnI CCSGG 1 cut(s) 323
BcoDI GTCTC 1 cut(s) 531
BfaI CTAG 3 cut(s) 341, 428, 768
BglII AGATCT 1 cut(s) 337
BisI GCNGC 4 cut(s) 117, 414, 581, 635
BlsI GCNGC 4 cut(s) 118, 415, 582, 636
Bme1390I CCNGG 2 cut(s) 323, 488
Bme18I GGWCC 1 cut(s) 523
BmgT120I GGNCC 2 cut(s) 523, 754
BmiI GGNNCC 2 cut(s) 115, 276
BmrFI CCNGG 2 cut(s) 323, 488
BmsI GCATC 1 cut(s) 424
BmtI GCTAGC 1 cut(s) 771
BpiI GAAGAC 1 cut(s) 504
Bpu10I CCTNAGC 1 cut(s) 599
BpuEI CTTGAG 2 cut(s) 142, 425
BpuMI CCSGG 1 cut(s) 323
BsaAI YACGTR 1 cut(s) 400
BsaJI CCNNGG 2 cut(s) 59, 487
Bsc4I CCNNNNNNNGG 6 cut(s) 60, 65, 123, 645, 646, 751
Bse118I RCCGGY 1 cut(s) 751
Bse21I CCTNAGG 1 cut(s) 758
Bse3DI GCAATG 1 cut(s) 609
BseBI CCWGG 1 cut(s) 488
BseDI CCNNGG 2 cut(s) 59, 487
BseLI CCNNNNNNNGG 6 cut(s) 60, 65, 123, 645, 646, 751
BseMI GCAATG 1 cut(s) 609
BseMII CTCAG 2 cut(s) 613, 749
BseRI GAGGAG 1 cut(s) 287
BseSI GKGCMC 1 cut(s) 746
BseXI GCAGC 2 cut(s) 400, 567
BshFI GGCC 3 cut(s) 350, 622, 755
BsiSI CCGG 2 cut(s) 322, 752
BslI CCNNNNNNNGG 6 cut(s) 60, 65, 123, 645, 646, 751
BsmAI GTCTC 1 cut(s) 531
BsmBI CGTCTC 1 cut(s) 531
BsnI GGCC 3 cut(s) 350, 622, 755
Bsp1286I GDGCHC 1 cut(s) 746
Bsp143I GATC 4 cut(s) 84, 108, 299, 337
BspACI CCGC 2 cut(s) 117, 635
BspANI GGCC 3 cut(s) 350, 622, 755
BspCNI CTCAG 2 cut(s) 612, 750
BspLI GGNNCC 2 cut(s) 115, 276
BspOI GCTAGC 1 cut(s) 771
BspQI GCTCTTC 1 cut(s) 563
BsrDI GCAATG 1 cut(s) 609
BsrFI RCCGGY 1 cut(s) 751
BssAI RCCGGY 1 cut(s) 751
BssECI CCNNGG 2 cut(s) 59, 487
BssMI GATC 4 cut(s) 84, 108, 299, 337
BssNAI GTATAC 1 cut(s) 231
BssT1I CCWWGG 1 cut(s) 59
Bst1107I GTATAC 1 cut(s) 231
Bst2UI CCWGG 1 cut(s) 488
Bst4CI ACNGT 1 cut(s) 164
Bst6I CTCTTC 1 cut(s) 563
BstBAI YACGTR 1 cut(s) 400
BstC8I GCNNGC 5 cut(s) 206, 658, 662, 753, 769
BstDEI CTNAG 4 cut(s) 105, 561, 599, 758
BstKTI GATC 4 cut(s) 87, 111, 302, 340
BstMAI GTCTC 1 cut(s) 531
BstMBI GATC 4 cut(s) 84, 108, 299, 337
BstMWI GCNNNNNNNGC 2 cut(s) 419, 666
BstNI CCWGG 1 cut(s) 488
BstSCI CCNGG 2 cut(s) 321, 486
BstSLI GKGCMC 1 cut(s) 746
BstV1I GCAGC 2 cut(s) 400, 567
BstV2I GAAGAC 1 cut(s) 504
BstX2I RGATCY 1 cut(s) 337
BstXI CCANNNNNNTGG 1 cut(s) 683
BstYI RGATCY 1 cut(s) 337
BstZ17I GTATAC 1 cut(s) 231
Bsu36I CCTNAGG 1 cut(s) 758
BsuRI GGCC 3 cut(s) 350, 622, 755
BtsIMutI CAGTG 1 cut(s) 169
Cac8I GCNNGC 5 cut(s) 206, 658, 662, 753, 769
Cfr10I RCCGGY 1 cut(s) 751
Cfr13I GGNCC 2 cut(s) 523, 754
CviAII CATG 5 cut(s) 234, 371, 683, 719, 728
DdeI CTNAG 4 cut(s) 105, 561, 599, 758
DpnI GATC 4 cut(s) 86, 110, 301, 339
DpnII GATC 4 cut(s) 84, 108, 299, 337
DraI TTTAAA 1 cut(s) 556
Eam1104I CTCTTC 1 cut(s) 563
EarI CTCTTC 1 cut(s) 563
Eco130I CCWWGG 1 cut(s) 59
Eco32I GATATC 1 cut(s) 441
Eco47I GGWCC 1 cut(s) 523
Eco72I CACGTG 1 cut(s) 400
Eco81I CCTNAGG 1 cut(s) 758
EcoO109I RGGNCCY 1 cut(s) 523
EcoRII CCWGG 1 cut(s) 486
EcoRV GATATC 1 cut(s) 441
EcoT14I CCWWGG 1 cut(s) 59
ErhI CCWWGG 1 cut(s) 59
Esp3I CGTCTC 1 cut(s) 531
FaeI CATG 5 cut(s) 237, 374, 686, 722, 731
FatI CATG 5 cut(s) 233, 370, 682, 718, 727
FblI GTMKAC 3 cut(s) 99, 230, 375
Fnu4HI GCNGC 4 cut(s) 117, 414, 581, 635
Fsp4HI GCNGC 4 cut(s) 117, 414, 581, 635
FspBI CTAG 3 cut(s) 341, 428, 768
GluI GCNGC 4 cut(s) 117, 414, 581, 635
HaeIII GGCC 3 cut(s) 350, 622, 755
HapII CCGG 2 cut(s) 322, 752
Hin1II CATG 5 cut(s) 237, 374, 686, 722, 731
HincII GTYRAC 2 cut(s) 376, 394
HindII GTYRAC 2 cut(s) 376, 394
HinfI GANTC 3 cut(s) 407, 500, 724
HpaII CCGG 2 cut(s) 322, 752
Hpy166II GTNNAC 4 cut(s) 100, 231, 376, 394
Hpy188I TCNGA 2 cut(s) 84, 113
Hpy188III TCNNGA 2 cut(s) 25, 428
Hpy8I GTNNAC 4 cut(s) 100, 231, 376, 394
Hpy99I CGWCG 1 cut(s) 300
HpyAV CCTTC 1 cut(s) 161
HpyCH4III ACNGT 1 cut(s) 164
HpyCH4IV ACGT 1 cut(s) 399
HpyCH4V TGCA 1 cut(s) 693
HpyF10VI GCNNNNNNNGC 2 cut(s) 419, 666
HpyF3I CTNAG 4 cut(s) 105, 561, 599, 758
HpySE526I ACGT 1 cut(s) 399
Hsp92II CATG 5 cut(s) 237, 374, 686, 722, 731
KroI GCCGGC 1 cut(s) 751
KroNI GCCGGC 1 cut(s) 753
Kzo9I GATC 4 cut(s) 84, 108, 299, 337
LguI GCTCTTC 1 cut(s) 563
LmnI GCTCC 2 cut(s) 113, 274
LpnPI CCDG 8 cut(s) 243, 335, 473, 500, 679, 759, 765, 770
Lsp1109I GCAGC 2 cut(s) 400, 567
LweI GCATC 1 cut(s) 424
MaeI CTAG 3 cut(s) 341, 428, 768
MaeII ACGT 1 cut(s) 399
MalI GATC 4 cut(s) 86, 110, 301, 339
MboI GATC 4 cut(s) 84, 108, 299, 337
MboII GAAGA 3 cut(s) 323, 509, 580
MfeI CAATTG 1 cut(s) 447
MflI RGATCY 1 cut(s) 337
MhlI GDGCHC 1 cut(s) 746
MluCI AATT 4 cut(s) 447, 528, 551, 651
MlyI GAGTC 2 cut(s) 416, 494
MmeI TCCRAC 1 cut(s) 161
MroNI GCCGGC 1 cut(s) 751
MseI TTAA 2 cut(s) 267, 555
MslI CAYNNNNRTG 1 cut(s) 681
MspI CCGG 2 cut(s) 322, 752
MspR9I CCNGG 2 cut(s) 323, 488
MunI CAATTG 1 cut(s) 447
MvaI CCWGG 1 cut(s) 488
MwoI GCNNNNNNNGC 2 cut(s) 419, 666
NaeI GCCGGC 1 cut(s) 753
NciI CCSGG 1 cut(s) 323
NdeII GATC 4 cut(s) 84, 108, 299, 337
NgoMIV GCCGGC 1 cut(s) 751
NheI GCTAGC 1 cut(s) 767
NlaIII CATG 5 cut(s) 237, 374, 686, 722, 731
NlaIV GGNNCC 2 cut(s) 115, 276
PciSI GCTCTTC 1 cut(s) 563
PdiI GCCGGC 1 cut(s) 753
PfeI GAWTC 1 cut(s) 724
PkrI GCNGC 4 cut(s) 118, 415, 582, 636
PleI GAGTC 2 cut(s) 415, 494
PmaCI CACGTG 1 cut(s) 400
PmlI CACGTG 1 cut(s) 400
PpsI GAGTC 2 cut(s) 415, 494
Ppu21I YACGTR 1 cut(s) 400
PpuMI RGGWCCY 1 cut(s) 523
Psp5II RGGWCCY 1 cut(s) 523
Psp6I CCWGG 1 cut(s) 486
PspCI CACGTG 1 cut(s) 400
PspGI CCWGG 1 cut(s) 486
PspN4I GGNNCC 2 cut(s) 115, 276
PspPI GGNCC 2 cut(s) 523, 754
PspPPI RGGWCCY 1 cut(s) 523
PsuI RGATCY 1 cut(s) 337
RseI CAYNNNNRTG 1 cut(s) 681
SalI GTCGAC 1 cut(s) 374
SapI GCTCTTC 1 cut(s) 563
SaqAI TTAA 2 cut(s) 267, 555
SatI GCNGC 4 cut(s) 117, 414, 581, 635
Sau3AI GATC 4 cut(s) 84, 108, 299, 337
Sau96I GGNCC 2 cut(s) 523, 754
SchI GAGTC 2 cut(s) 416, 494
ScrFI CCNGG 2 cut(s) 323, 488
SduI GDGCHC 1 cut(s) 746
SetI ASST 9 cut(s) 99, 172, 210, 402, 482, 528, 562, 769, 773
SfaNI GCATC 1 cut(s) 424
SinI GGWCC 1 cut(s) 523
SmiMI CAYNNNNRTG 1 cut(s) 681
SmlI CTYRAG 2 cut(s) 121, 404
SmoI CTYRAG 2 cut(s) 121, 404
Sse9I AATT 4 cut(s) 447, 528, 551, 651
SsiI CCGC 2 cut(s) 117, 635
SspI AATATT 1 cut(s) 17
SspMI CTAG 3 cut(s) 341, 428, 768
StyD4I CCNGG 2 cut(s) 321, 486
StyI CCWWGG 1 cut(s) 59
TaaI ACNGT 1 cut(s) 164
TaiI ACGT 1 cut(s) 402
TaqI TCGA 5 cut(s) 24, 87, 246, 330, 375
TasI AATT 4 cut(s) 447, 528, 551, 651
TauI GCSGC 2 cut(s) 119, 637
TfiI GAWTC 1 cut(s) 724
Tru1I TTAA 2 cut(s) 267, 555
Tru9I TTAA 2 cut(s) 267, 555
TscAI CASTG 1 cut(s) 169
TseI GCWGC 2 cut(s) 413, 580
TspDTI ATGAA 4 cut(s) 9, 359, 671, 716
TspRI CASTG 1 cut(s) 169
VpaK11BI GGWCC 1 cut(s) 523
XbaI TCTAGA 1 cut(s) 427
XmiI GTMKAC 3 cut(s) 99, 230, 375
XspI CTAG 3 cut(s) 341, 428, 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.