Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0007437

Physical Location & Seq

Genomic Coordinates Forward (+)

12255331 .. 12261230

Gene Structure 5900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g20640.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2226 bp

ATGGCACTAAGATTGAGTAAAGAAATACTTGCGCGTAACTGCGTCATTAAAAGGTGCTCATTGGGGTTCTACTTGTCTTCAGTTATTCAGAGGGCAACCTTAATATCAAATCAGGATACAGAATTAGTTGTGAGTGGAAGATCTATTTATTCTTCGGTATCAAGTATAAGCTATGAACAGCATCGGAATTCATCTACCCAAAATTTTTGTACTGCTGTTCATCCTGAAAAGCTGTGTTGGGAAGGTTCTTCTCGTGCAGCTATGTTGAAAAGGCTCGAAGTTGCCTTGAAGGAACATCAAGTGAATGAAGTATGGGAATCATTTATTGATTTCAAAAGGTTGCATGGCTTTCCTGAGGGTTTTCTTATTCATAAGCTAATAACAGAACTGTGCTATTCATCTGACCCTTACTGGCTACAAAAAGCATGTGATCTAGTCCTGGTAAATTTGAGAGAGAGATCAGACGTACTTCAGTCAGATATCTTGACAAAGCTCTCCCTCTCCTTGGCACGCTCTCAAATGCCTAAGCCTGCTATGATGATCTTGCGATTAATGCTGGAGAAAAGGAATTTACCCCCCATGAATGTATTGTGCTTGGTTGTTCTGCATTTGGTAAAGACTGAGATTGGGACTCACCTTGCTTCAAATTTCTTAATCCAAATTTGTGATCACTTCCAAAGCTTGAGAGCAAAAAAGAGTGACCACACAAAGCTATTGCAACCGGATACAATGATATTTAACCTTGTTCTTGATGCCTGTGTCAGGTTCAAATTAGCTCTGAAAGGCCAGCAGATCATGGAATTGATGTCTGCAACAGGAGTGGCTGCTGATGCACACTCTATTGTCATTATAGCCCGGATTCATGAATTGAATGGTCAAAGGGAGGAGATTAAGAATTATAAATGTTATATTGATCAGGTTTCAGCTCCATTTGTTCAACACTATCATCAATTTTATGATAGTTTGTTGAGCTTGCATTTCAAGTTTAATGATGTGGTTGCTGCCAGTGAGCTTATATTACAAATGTGTGATGATCGTAAGTCTCTTCTGATTCAGAGAGATAAGAAGAACTCACAAAGGTCTTATCTTGTTCCAATTGGTTCTCATAATCAGAAGTCTGGGTTGAATATGCAGATTGTCCCTGAGCTGCTGCAGAAAGATTCTGTCCTCAAATTAGAAGGTAAACAAGAGCTTGTTATGTACTTAAACGGGAAACTTGTTCTTAGCAACAGGGCTCTGGCCAAGCTCATAACCAGATACAAAATAGATGGGGATACTTCTGAGCTTTCAAAACTTTTACACAAAATTCAAAAGGAATTATGTTCATTCAGAGGATCTAGATTGGGCAATGATGTGATTGATGCTTGCATTCAATTAGGTTGGCTAGAAACTGCTCATGACATTTTAGATGACATGGAAGCAGCTGAGACTCCTATGGGGTATAGTACCTTCATGTCACTCTTGACAGCCTATTACAAAGGAAAACTGGTTCCAGAAGCAAAGGCATTGCTTAAACAGATGAGAAAGGCTGGTTTGCTTGTAAGTTTATCCGATGAGATGGTTGCCTCAACATGTCTATCAGTAGTTGATACATCTGCCTGTTGTACAAGTGCATCAAGTTCCACCAGTAAATCTGATCTGGCAAATGCTTTGGTTCAGGAATCGAGAGATGAGGAGGAAACTCCTTCTAGGGTTTCTGATCTGGTAAATGCTTTGGTTCAGGAAACGAGAGATGAGAAAGAGGGAATTTCTTCTAGGGTTTATCAGTTCAATTCTTCTATCAATTTCTTTTGCAAGGCCAAAATGATTGATGATGCTTTGAAAACATACAAAAGAATGCAAGAGTTAAAAATTTACCCCACTGAGCTAACTTTTACTTATATGATAAAAGCGTATTCTTCTCTAGGAATGTTCCGTAATATCACATTCTTGTGGGGGGACATGAAGAGGAATATGGAGAATGGAAATTTGGTGGTAAGCAGAGATCTGTACGAGTACCTGCTACTGGACTTCCTCGGTGGTGGTTACTTTGAGAGAGTCATGGAGGTCATTAGCTATATGAAGAAGCATGGTATGTTTGCTGACAAGTGGATGTACAGAAGTGAGTTTGAAAAGCTTCATAAGAATCTTTATAGGAACTTGAAGGCATCAGAAGCCAGAACGGATGCTCAGAGGAAAAGACTTGAATTTGTTCAGGCATTTAGGAAATATGTATCTGGGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

742

Amino Acids

84.69

Weight (kDa)

8.78

Isoelectric Point (pI)

42.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_At1g68980	PF25245	85 - 207	3.5e-10	At1g68980, TPR repeats
PPR_2	PF13041	590 - 632	1.4e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17616
fragaria_vesca	FvH4_5g20640 FvH4_5g20640 FvH4_5g20640
malus_domestica	MD14G1082200.v1.1 MD14G1090100.v1.1
prunus_persica	Prupe.2G056400_v2.0.a1 Prupe.7G036400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0206021 RchiOBHm_Chr7g0206121 RchiOBHm_Chr7g0206131
rosa_laevigata	RLG00000003334 RLG00000003337
rosa_multiflora	Rmu_sc0000076.1_g000009 Rmu_sc0000076.1_g000017 Rmu_sc0004084.1_g000022
rosa_roxburghii	Rroxscaffold_3G00251830
rosa_rugosa	Rorug07G0094500 Rorug07G0094500
rosa_samantha	Rh7AG226700 Rh7BG222900 Rh7CG240700 Rh7DG232700
rosa_wichuraiana	Rw0G012920 Rw7G019570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	900
Acc36I	ACCTGC	1 cut(s)	2007
AccII	CGCG	1 cut(s)	34
AclWI	GGATC	1 cut(s)	1342
AcoI	YGGCCR	1 cut(s)	1239
AcuI	CTGAAG	2 cut(s)	63, 455
AfaI	GTAC	8 cut(s)	211, 468, 1202, 1447, 1606, 1991, 1997, 2096
AfiI	CCNNNNNNNGG	3 cut(s)	505, 762, 2005
AflIII	ACRYGT	1 cut(s)	1571
AjnI	CCWGG	1 cut(s)	438
AjuI	GAANNNNNNNTTGG	2 cut(s)	1952, 1984
AloI	GAACNNNNNNTCC	2 cut(s)	1473, 1505
Alw21I	GWGCWC	1 cut(s)	59
Alw26I	GTCTC	2 cut(s)	1047, 1421
AlwI	GGATC	1 cut(s)	1342
AoxI	GGCC	3 cut(s)	784, 1239, 1797
ApeKI	GCWGC	6 cut(s)	257, 824, 1001, 1147, 1150, 1421
AseI	ATTAAT	1 cut(s)	551
Asp700I	GAANNNNTTC	3 cut(s)	1750, 2115, 2190
AspLEI	GCGC	1 cut(s)	34
AsuC2I	CCSGG	1 cut(s)	856
AsuHPI	GGTGA	1 cut(s)	626
AxyI	CCTNAGG	1 cut(s)	354
BalI	TGGCCA	1 cut(s)	1241
BanII	GRGCYC	1 cut(s)	1237
BarI	GAAGNNNNNNTAC	2 cut(s)	1433, 1465
BauI	CACGAG	1 cut(s)	252
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	1 cut(s)	59
BbvI	GCAGC	6 cut(s)	269, 811, 988, 1134, 1137, 1433
BccI	CCATC	2 cut(s)	1262, 1552
BciT130I	CCWGG	1 cut(s)	440
BciVI	GTATCC	3 cut(s)	109, 718, 1267
BclI	TGATCA	2 cut(s)	667, 913
BcnI	CCSGG	1 cut(s)	856
BcoDI	GTCTC	2 cut(s)	1047, 1421
BfaI	CTAG	6 cut(s)	434, 1338, 1385, 1689, 1755, 1904
BfmI	CTRYAG	1 cut(s)	1151
BfuAI	ACCTGC	1 cut(s)	2007
BfuI	GTATCC	3 cut(s)	109, 718, 1267
BglII	AGATCT	2 cut(s)	140, 1984
BisI	GCNGC	6 cut(s)	258, 825, 1002, 1148, 1151, 1422
BlsI	GCNGC	6 cut(s)	259, 826, 1003, 1149, 1152, 1423
Bme1390I	CCNGG	2 cut(s)	440, 856
BmiI	GGNNCC	1 cut(s)	1491
BmrFI	CCNGG	2 cut(s)	440, 856
BmsI	GCATC	8 cut(s)	190, 742, 820, 1351, 1622, 1804, 2155, 2156
BpiI	GAAGAC	1 cut(s)	69
BpmI	CTGGAG	1 cut(s)	578
Bpu10I	CCTNAGC	2 cut(s)	525, 1143
BpuEI	CTTGAG	1 cut(s)	703
BpuMI	CCSGG	1 cut(s)	856
BsaJI	CCNNGG	2 cut(s)	504, 2014
BsaWI	WCCGGW	1 cut(s)	721
Bsc4I	CCNNNNNNNGG	3 cut(s)	505, 762, 2005
Bse1I	ACTGG	5 cut(s)	416, 1005, 1491, 1626, 2010
Bse21I	CCTNAGG	1 cut(s)	354
Bse3DI	GCAATG	2 cut(s)	1354, 1505
BseBI	CCWGG	1 cut(s)	440
BseDI	CCNNGG	2 cut(s)	504, 2014
BseGI	GGATG	3 cut(s)	220, 2097, 2170
BseLI	CCNNNNNNNGG	3 cut(s)	505, 762, 2005
BseMI	GCAATG	2 cut(s)	1354, 1505
BseMII	CTCAG	7 cut(s)	345, 612, 1134, 1272, 1416, 1854, 2183
BseNI	ACTGG	5 cut(s)	416, 1005, 1491, 1626, 2010
BseRI	GAGGAG	2 cut(s)	899, 1688
BseXI	GCAGC	6 cut(s)	269, 811, 988, 1134, 1137, 1433
BsgI	GTGCAG	1 cut(s)	276
Bsh1236I	CGCG	1 cut(s)	34
BshFI	GGCC	3 cut(s)	786, 1241, 1799
BsiHKAI	GWGCWC	1 cut(s)	59
BsiSI	CCGG	2 cut(s)	722, 856
BslFI	GGGAC	3 cut(s)	643, 1124, 1952
BslI	CCNNNNNNNGG	3 cut(s)	505, 762, 2005
BsmAI	GTCTC	2 cut(s)	1047, 1421
BsmFI	GGGAC	3 cut(s)	643, 1124, 1952
BsmI	GAATGC	2 cut(s)	1368, 1842
BsnI	GGCC	3 cut(s)	786, 1241, 1799
Bsp1286I	GDGCHC	2 cut(s)	59, 1237
Bsp1407I	TGTACA	2 cut(s)	1604, 2094
BspANI	GGCC	3 cut(s)	786, 1241, 1799
BspCNI	CTCAG	7 cut(s)	346, 613, 1135, 1273, 1417, 1855, 2182
BspFNI	CGCG	1 cut(s)	34
BspHI	TCATGA	2 cut(s)	862, 1396
BspLI	GGNNCC	1 cut(s)	1491
BspMAI	CTGCAG	1 cut(s)	1155
BspMI	ACCTGC	1 cut(s)	2007
BspPI	GGATC	1 cut(s)	1342
BsrDI	GCAATG	2 cut(s)	1354, 1505
BsrGI	TGTACA	2 cut(s)	1604, 2094
BsrI	ACTGG	5 cut(s)	416, 1005, 1491, 1626, 2010
BssECI	CCNNGG	2 cut(s)	504, 2014
BssSI	CACGAG	1 cut(s)	252
BssT1I	CCWWGG	1 cut(s)	504
Bst2BI	CACGAG	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	440
Bst4CI	ACNGT	1 cut(s)	390
Bst6I	CTCTTC	2 cut(s)	1050, 1940
BstAUI	TGTACA	2 cut(s)	1604, 2094
BstC8I	GCNNGC	5 cut(s)	511, 531, 788, 974, 1366
BstENI	CCTNNNNNAGG	1 cut(s)	760
BstF5I	GGATG	3 cut(s)	220, 2097, 2170
BstFNI	CGCG	1 cut(s)	34
BstHHI	GCGC	1 cut(s)	34
BstMAI	GTCTC	2 cut(s)	1047, 1421
BstMWI	GCNNNNNNNGC	3 cut(s)	553, 830, 2153
BstNI	CCWGG	1 cut(s)	440
BstNSI	RCATGY	2 cut(s)	429, 1575
BstSCI	CCNGG	2 cut(s)	438, 854
BstSFI	CTRYAG	1 cut(s)	1151
BstUI	CGCG	1 cut(s)	34
BstV1I	GCAGC	6 cut(s)	269, 811, 988, 1134, 1137, 1433
BstV2I	GAAGAC	1 cut(s)	69
BstX2I	RGATCY	3 cut(s)	140, 1334, 1984
BstYI	RGATCY	3 cut(s)	140, 1334, 1984
Bsu36I	CCTNAGG	1 cut(s)	354
BsuI	GTATCC	3 cut(s)	109, 718, 1267
BsuRI	GGCC	3 cut(s)	786, 1241, 1799
BtsCI	GGATG	3 cut(s)	220, 2097, 2170
BtsIMutI	CAGTG	2 cut(s)	1012, 1860
BveI	ACCTGC	1 cut(s)	2007
Cac8I	GCNNGC	5 cut(s)	511, 531, 788, 974, 1366
CciI	TCATGA	2 cut(s)	862, 1396
CfoI	GCGC	1 cut(s)	34
CseI	GACGC	1 cut(s)	31
Csp6I	GTAC	8 cut(s)	210, 467, 1201, 1446, 1605, 1990, 1996, 2095
CspCI	CAANNNNNGTGG	2 cut(s)	801, 836
CviQI	GTAC	8 cut(s)	210, 467, 1201, 1446, 1605, 1990, 1996, 2095
EaeI	YGGCCR	1 cut(s)	1239
Eam1104I	CTCTTC	2 cut(s)	1050, 1940
EarI	CTCTTC	2 cut(s)	1050, 1940
Eco130I	CCWWGG	1 cut(s)	504
Eco24I	GRGCYC	1 cut(s)	1237
Eco32I	GATATC	1 cut(s)	481
Eco57I	CTGAAG	2 cut(s)	63, 455
Eco81I	CCTNAGG	1 cut(s)	354
EcoNI	CCTNNNNNAGG	1 cut(s)	760
EcoRI	GAATTC	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	438
EcoRV	GATATC	1 cut(s)	481
EcoT14I	CCWWGG	1 cut(s)	504
EcoT38I	GRGCYC	1 cut(s)	1237
ErhI	CCWWGG	1 cut(s)	504
FalI	AAGNNNNNCTT	2 cut(s)	12, 44
FaqI	GGGAC	3 cut(s)	643, 1124, 1952
FbaI	TGATCA	2 cut(s)	667, 913
Fnu4HI	GCNGC	6 cut(s)	258, 825, 1002, 1148, 1151, 1422
FokI	GGATG	3 cut(s)	207, 2104, 2177
FriOI	GRGCYC	1 cut(s)	1237
Fsp4HI	GCNGC	6 cut(s)	258, 825, 1002, 1148, 1151, 1422
FspBI	CTAG	6 cut(s)	434, 1338, 1385, 1689, 1755, 1904
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	6 cut(s)	258, 825, 1002, 1148, 1151, 1422
GsuI	CTGGAG	1 cut(s)	578
HaeIII	GGCC	3 cut(s)	786, 1241, 1799
HapII	CCGG	2 cut(s)	722, 856
HgaI	GACGC	1 cut(s)	31
HhaI	GCGC	1 cut(s)	34
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HindIII	AAGCTT	2 cut(s)	679, 2114
HinfI	GANTC	9 cut(s)	317, 631, 859, 1051, 1160, 1429, 1661, 2037, 2125
HpaII	CCGG	2 cut(s)	722, 856
HphI	GGTGA	1 cut(s)	626
Hpy166II	GTNNAC	1 cut(s)	1184
Hpy8I	GTNNAC	1 cut(s)	1184
HpyAV	CCTTC	6 cut(s)	236, 283, 1172, 1459, 1695, 2137
HpyCH4III	ACNGT	1 cut(s)	390
HpyCH4IV	ACGT	1 cut(s)	465
HpyF10VI	GCNNNNNNNGC	3 cut(s)	553, 830, 2153
HpySE526I	ACGT	1 cut(s)	465
HspAI	GCGC	1 cut(s)	32
Ksp22I	TGATCA	2 cut(s)	667, 913
LmnI	GCTCC	1 cut(s)	931
Lsp1109I	GCAGC	6 cut(s)	269, 811, 988, 1134, 1137, 1433
LweI	GCATC	8 cut(s)	190, 742, 820, 1351, 1622, 1804, 2155, 2156
MaeI	CTAG	6 cut(s)	434, 1338, 1385, 1689, 1755, 1904
MaeII	ACGT	1 cut(s)	465
MaeIII	GTNAC	4 cut(s)	35, 698, 1455, 2024
MfeI	CAATTG	1 cut(s)	1095
MflI	RGATCY	3 cut(s)	140, 1334, 1984
MhlI	GDGCHC	2 cut(s)	59, 1237
MlsI	TGGCCA	1 cut(s)	1241
MluNI	TGGCCA	1 cut(s)	1241
MlyI	GAGTC	3 cut(s)	625, 1423, 2046
Mox20I	TGGCCA	1 cut(s)	1241
MroXI	GAANNNNTTC	3 cut(s)	1750, 2115, 2190
MscI	TGGCCA	1 cut(s)	1241
MslI	CAYNNNNRTG	1 cut(s)	1930
Msp20I	TGGCCA	1 cut(s)	1241
MspA1I	CMGCKG	1 cut(s)	1424
MspI	CCGG	2 cut(s)	722, 856
MspR9I	CCNGG	2 cut(s)	440, 856
MunI	CAATTG	1 cut(s)	1095
Mva1269I	GAATGC	2 cut(s)	1368, 1842
MvaI	CCWGG	1 cut(s)	440
MvnI	CGCG	1 cut(s)	34
MwoI	GCNNNNNNNGC	3 cut(s)	553, 830, 2153
NciI	CCSGG	1 cut(s)	856
NlaIV	GGNNCC	1 cut(s)	1491
NmuCI	GTSAC	2 cut(s)	698, 1455
NspI	RCATGY	2 cut(s)	429, 1575
PagI	TCATGA	2 cut(s)	862, 1396
PciI	ACATGT	1 cut(s)	1571
PctI	GAATGC	2 cut(s)	1368, 1842
PdmI	GAANNNNTTC	3 cut(s)	1750, 2115, 2190
PfeI	GAWTC	6 cut(s)	317, 859, 1051, 1160, 1661, 2125
PkrI	GCNGC	6 cut(s)	259, 826, 1003, 1149, 1152, 1423
PleI	GAGTC	3 cut(s)	625, 1423, 2045
PpsI	GAGTC	3 cut(s)	625, 1423, 2045
PscI	ACATGT	1 cut(s)	1571
PshBI	ATTAAT	1 cut(s)	551
PsiI	TTATAA	1 cut(s)	900
Psp6I	CCWGG	1 cut(s)	438
PspGI	CCWGG	1 cut(s)	438
PspN4I	GGNNCC	1 cut(s)	1491
PstI	CTGCAG	1 cut(s)	1155
PsuI	RGATCY	3 cut(s)	140, 1334, 1984
PvuII	CAGCTG	1 cut(s)	1424
RsaI	GTAC	8 cut(s)	211, 468, 1202, 1447, 1606, 1991, 1997, 2096
RsaNI	GTAC	8 cut(s)	210, 467, 1201, 1446, 1605, 1990, 1996, 2095
RseI	CAYNNNNRTG	1 cut(s)	1930
SatI	GCNGC	6 cut(s)	258, 825, 1002, 1148, 1151, 1422
SchI	GAGTC	3 cut(s)	625, 1423, 2046
ScrFI	CCNGG	2 cut(s)	440, 856
SduI	GDGCHC	2 cut(s)	59, 1237
SfaNI	GCATC	8 cut(s)	190, 742, 820, 1351, 1622, 1804, 2155, 2156
SfcI	CTRYAG	1 cut(s)	1151
SmiMI	CAYNNNNRTG	1 cut(s)	1930
SmlI	CTYRAG	1 cut(s)	682
SmoI	CTYRAG	1 cut(s)	682
SspMI	CTAG	6 cut(s)	434, 1338, 1385, 1689, 1755, 1904
StyD4I	CCNGG	2 cut(s)	438, 854
StyI	CCWWGG	1 cut(s)	504
TaaI	ACNGT	1 cut(s)	390
TaiI	ACGT	1 cut(s)	468
TaqI	TCGA	2 cut(s)	276, 1664
TatI	WGTACW	4 cut(s)	209, 1200, 1604, 2094
TfiI	GAWTC	6 cut(s)	317, 859, 1051, 1160, 1661, 2125
TscAI	CASTG	2 cut(s)	1012, 1867
TseFI	GTSAC	2 cut(s)	698, 1455
TseI	GCWGC	6 cut(s)	257, 824, 1001, 1147, 1150, 1421
Tsp45I	GTSAC	2 cut(s)	698, 1455
TspGWI	ACGGA	2 cut(s)	1904, 2177
TspRI	CASTG	2 cut(s)	1012, 1867
VspI	ATTAAT	1 cut(s)	551
XagI	CCTNNNNNAGG	1 cut(s)	760
XbaI	TCTAGA	1 cut(s)	1337
XceI	RCATGY	2 cut(s)	429, 1575
XmnI	GAANNNNTTC	3 cut(s)	1750, 2115, 2190
XspI	CTAG	6 cut(s)	434, 1338, 1385, 1689, 1755, 1904

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.