MD14G1090100.v1.1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Reverse (-)
11465435 .. 11470021
4587 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1090100.v1.1.491

Sequence Viewer

Length: 2145 bp
ATGATATATCTATGGCGAAACTGTTTCATCAAGAGGTTTCGATTGGATTTTTGTGCGGCTTCAGCTATCCAGAGGACTGCCTTGATATCAACTTATGACAGGGAATCAGCTTCAAATAGGACATTTCCAAAGCCCGTCCTATCAAGTGTATACTATGAGCAGCACCAAATTTCATCTACCCGATATTTTTGTTCTTGTGCTCAGTCTGTAAGGCTATGTTGGGAAGGTTCTTCTCCTACAGTTCTGTTGAAAAGGCTCCAAATAGCCTTGAAGGAACATCAAGTAAATGAAGCATGGGAGTCCTTTATTGATTTTAAAAGGTTGCATGGCTTTCCTGAGGTTTTCATTGTCCGTAAGCTGATAACTGAACTGTGCTATTCATCTGACCCTCACTGGCTGCTAAAAGCATGTGATGTAGCCTTGGAAGTTTTGAAAGATCAATCAGACTTACTGCAGTCTGATATCCTGCAAAAGCTCTCCCTCTCTTTAGCTCGGAGTCAAATGCCAAAGCCTGCTACAATGATTCTTAGAATATTACTGGAGAAAGATAATTTGCCCCCCTTGAATGCGTTATGCTTGGTTGTTCTGCATATGGTAAAGACTGAGGTTGGGACGAACCTTGCATCTAATTTCTTAATTCAGATTTGTCATCGTTTCCAACGTTTGAGTGTAAACAAGAGTGGTCATGCAAAGCAGATTCAACCTGATACAATGATTTTCAACCTTGTCCTTGATGCTTGCGTGAGGTTCAAATTATCTTTCAAAGGCCAACAGATTTTGGAATTGATGCCTCAAACAGGAGTTGTTGCTGATGCACACTCTGTTATCATTATTTCCCAGATCCATGAGTTGAATGGTCAGCGAGACGAGATAAAAAAGTATAAAAGTCATATTGATCAAGTTTCAGTTGCTCTTCTGCAACATTATCGGCAGTTCTATGATAGTTTGTTGACCTTGCATTTCAAGTTTAATGACATTGAGGCAGCCACTGAGCTTGTATTACAAATGTGTGACTACCATGAGTCTCTTCCGGTTCAAAGAGACAGAAAGAACTCTCATAAGTCTTATAATGTTCCAATTGGATCTCACAATCTCAAGTCTGGGTTGCAGATGCAGATTTTACCCGAGCTGCTGCAGAAGGATTCTGTGCTAAAAGTAGAGGGAAAACATGAGCTTGTTATTTATTGGAATGGGAAACTTGTCCTTAGTAATAGGGCTCTGGCAAAGCTCGTAAATGGATACAGAAAGGGTGGAGATACTTGCAATCTTTCAAAAATTCTACTAAAAATGCAAAAGGAGTTATGTTCCTCAAGAGGATCTGGTTTGTGTTCTGATGTGATTGATGCTTGCATTCATTTAGGTTGGCTAGAAACCGCCCATGATCTTTTGGATGACCTAGATGCAGCTGGGTCTCCCTTGGGCTTGACTCCCTTTATGTCACTCTTGACAGCCTACTACAAAGAAAAGATGTTTCTGGAAGCAAAGGCATTGATTAAACAAATGAGGAATGCTGGCCTGCTTGAAAATTTATCTGACGAGATGGTTGTCTCCAAGTGCGGATCAATAGTGGATTCCAGTGCCATGTTTACAAATGCTTCAAGCTCTACTGTTAAATCAGATCTGGCAAATGCTTTGCTTCAGGAAATGAGAGATGAGAAGAAGGAAATTCCGTCTACTGTTTATCAGTTCAATTCTTCCATCAACTTTTTCTGCAAGGCCAAAATGATTGATGATGCTTTAAAGACGTACAGAAGATTGCATGAGATGAAAATTCAACCCACTGAGCAAACGTTTACCTATCTGTTATATGGGTATTATTCTCTGGGAATGTTTCGTGCTATGACAATCTTGTGGGGCGACATTAAGAGGAATATCGAGAGTAGCAATTTGGTGGTAAGCAGAGATCTCTATGAGTACTTGCTGTTGAACTTTATTCGTGGTGGTTACTTTGAGAGAGTGATGGAGGTCATTGACTATATGAAGAAACGTGGTATGTACACTGACAAATGGTTGTATAGAAGTGAGTTTGTAAAACTTCATAAGAATCTTTACAGGAATTTAAAGGCATCAGAAGCCAAAACTGAAGCTCAAAGAAAGAGGCTTAAGTATGTAGAGGCATTTAGAAAGTGGGCAGACATTGACTGA

Protein Analysis

715

Amino Acids

82.2

Weight (kDa)

8.95

Isoelectric Point (pI)

42.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_At1g68980 PF25245 81 - 201 3.6e-09 At1g68980, TPR repeats
TPR_24 PF23276 441 - 585 4.3e-06 Fungal tetratrico peptide repeats
PPR_2 PF13041 560 - 605 1e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1068
AccI GTMKAC 2 cut(s) 150, 1673
AciI CCGC 3 cut(s) 56, 1374, 1557
AclI AACGTT 2 cut(s) 661, 1790
AclWI GGATC 4 cut(s) 835, 1090, 1324, 1567
AcsI RAATTY 6 cut(s) 168, 1275, 1525, 1665, 1770, 2056
AcuI CTGAAG 3 cut(s) 45, 1622, 2103
AfaI GTAC 3 cut(s) 1748, 1916, 1997
AfiI CCNNNNNNNGG 1 cut(s) 797
AflII CTTAAG 1 cut(s) 2102
Alw21I GWGCWC 1 cut(s) 202
Alw26I GTCTC 5 cut(s) 858, 1029, 1035, 1416, 1552
AlwI GGATC 4 cut(s) 835, 1090, 1324, 1567
AlwNI CAGNNNCTG 1 cut(s) 989
Ama87I CYCGRG 1 cut(s) 1124
AoxI GGCC 3 cut(s) 766, 1513, 1716
ApeKI GCWGC 6 cut(s) 160, 397, 983, 1129, 1132, 1403
ApoI RAATTY 6 cut(s) 168, 1275, 1525, 1665, 1770, 2056
AvaI CYCGRG 1 cut(s) 1124
AxyI CCTNAGG 1 cut(s) 336
BanII GRGCYC 1 cut(s) 1219
Bbv12I GWGCWC 1 cut(s) 202
BbvI GCAGC 6 cut(s) 172, 384, 995, 1116, 1119, 1415
BccI CCATC 3 cut(s) 1534, 1706, 1954
BcgI CGANNNNNNTGC 2 cut(s) 908, 942
BciVI GTATCC 1 cut(s) 1232
BclI TGATCA 1 cut(s) 895
BcoDI GTCTC 5 cut(s) 858, 1029, 1035, 1416, 1552
BfaI CTAG 2 cut(s) 1367, 1397
BfmI CTRYAG 3 cut(s) 237, 452, 1133
BfrI CTTAAG 1 cut(s) 2102
BfuI GTATCC 1 cut(s) 1232
BglII AGATCT 2 cut(s) 1618, 1903
BisI GCNGC 7 cut(s) 57, 161, 398, 984, 1130, 1133, 1404
BlsI GCNGC 7 cut(s) 58, 162, 399, 985, 1131, 1134, 1405
BmcAI AGTACT 1 cut(s) 1916
BmeT110I CYCGRG 1 cut(s) 1124
BmiI GGNNCC 1 cut(s) 257
BmsI GCATC 9 cut(s) 632, 724, 777, 802, 1101, 1333, 1390, 1723, 2075
BpmI CTGGAG 1 cut(s) 560
BpuEI CTTGAG 2 cut(s) 1079, 1294
BsaI GGTCTC 1 cut(s) 1416
BsaJI CCNNGG 2 cut(s) 420, 1416
BsaWI WCCGGW 1 cut(s) 1030
Bsc4I CCNNNNNNNGG 1 cut(s) 797
Bse1I ACTGG 3 cut(s) 398, 543, 1575
Bse21I CCTNAGG 1 cut(s) 336
BseDI CCNNGG 2 cut(s) 420, 1416
BseGI GGATG 1 cut(s) 1396
BseLI CCNNNNNNNGG 1 cut(s) 797
BseMII CTCAG 5 cut(s) 215, 327, 594, 981, 1773
BseNI ACTGG 3 cut(s) 398, 543, 1575
BseXI GCAGC 6 cut(s) 172, 384, 995, 1116, 1119, 1415
BseYI CCCAGC 1 cut(s) 1406
BshFI GGCC 3 cut(s) 768, 1515, 1718
BsiHKAI GWGCWC 1 cut(s) 202
BsiHKCI CYCGRG 1 cut(s) 1124
BsiSI CCGG 1 cut(s) 1031
BslFI GGGAC 1 cut(s) 625
BslI CCNNNNNNNGG 1 cut(s) 797
BsmAI GTCTC 5 cut(s) 858, 1029, 1035, 1416, 1552
BsmBI CGTCTC 1 cut(s) 858
BsmFI GGGAC 1 cut(s) 625
BsmI GAATGC 3 cut(s) 571, 1350, 1513
BsnI GGCC 3 cut(s) 768, 1515, 1718
Bso31I GGTCTC 1 cut(s) 1416
BsoBI CYCGRG 1 cut(s) 1124
Bsp1286I GDGCHC 2 cut(s) 202, 1219
Bsp1407I TGTACA 1 cut(s) 1995
Bsp143I GATC 9 cut(s) 436, 840, 895, 1082, 1316, 1381, 1559, 1618, 1903
BspACI CCGC 3 cut(s) 56, 1374, 1557
BspANI GGCC 3 cut(s) 768, 1515, 1718
BspCNI CTCAG 5 cut(s) 214, 328, 595, 982, 1774
BspLI GGNNCC 1 cut(s) 257
BspMAI CTGCAG 2 cut(s) 456, 1137
BspPI GGATC 4 cut(s) 835, 1090, 1324, 1567
BspQI GCTCTTC 1 cut(s) 918
BspTI CTTAAG 1 cut(s) 2102
BspTNI GGTCTC 1 cut(s) 1416
BsrGI TGTACA 1 cut(s) 1995
BsrI ACTGG 3 cut(s) 398, 543, 1575
BssECI CCNNGG 2 cut(s) 420, 1416
BssMI GATC 9 cut(s) 436, 840, 895, 1082, 1316, 1381, 1559, 1618, 1903
BssNAI GTATAC 1 cut(s) 151
BssT1I CCWWGG 2 cut(s) 420, 1416
Bst1107I GTATAC 1 cut(s) 151
Bst4CI ACNGT 5 cut(s) 23, 241, 372, 1609, 1678
Bst6I CTCTTC 2 cut(s) 918, 1032
BstAFI CTTAAG 1 cut(s) 2102
BstAUI TGTACA 1 cut(s) 1995
BstC8I GCNNGC 5 cut(s) 513, 739, 1348, 1513, 1517
BstDEI CTNAG 7 cut(s) 201, 336, 527, 603, 990, 1205, 1782
BstENI CCTNNNNNAGG 1 cut(s) 795
BstF5I GGATG 1 cut(s) 1396
BstKTI GATC 9 cut(s) 439, 843, 898, 1085, 1319, 1384, 1562, 1621, 1906
BstMAI GTCTC 5 cut(s) 858, 1029, 1035, 1416, 1552
BstMBI GATC 9 cut(s) 436, 840, 895, 1082, 1316, 1381, 1559, 1618, 1903
BstMWI GCNNNNNNNGC 2 cut(s) 62, 2072
BstNSI RCATGY 1 cut(s) 411
BstSFI CTRYAG 3 cut(s) 237, 452, 1133
BstV1I GCAGC 6 cut(s) 172, 384, 995, 1116, 1119, 1415
BstX2I RGATCY 5 cut(s) 840, 1082, 1316, 1618, 1903
BstYI RGATCY 5 cut(s) 840, 1082, 1316, 1618, 1903
BstZ17I GTATAC 1 cut(s) 151
Bsu36I CCTNAGG 1 cut(s) 336
BsuI GTATCC 1 cut(s) 1232
BsuRI GGCC 3 cut(s) 768, 1515, 1718
BtsCI GGATG 1 cut(s) 1396
BtsIMutI CAGTG 5 cut(s) 391, 987, 1582, 1779, 1998
Cac8I GCNNGC 5 cut(s) 513, 739, 1348, 1513, 1517
CaiI CAGNNNCTG 1 cut(s) 989
Csp6I GTAC 3 cut(s) 1747, 1915, 1996
CspCI CAANNNNNGTGG 2 cut(s) 976, 1011
CviQI GTAC 3 cut(s) 1747, 1915, 1996
DdeI CTNAG 7 cut(s) 201, 336, 527, 603, 990, 1205, 1782
DpnI GATC 9 cut(s) 438, 842, 897, 1084, 1318, 1383, 1561, 1620, 1905
DpnII GATC 9 cut(s) 436, 840, 895, 1082, 1316, 1381, 1559, 1618, 1903
DraI TTTAAA 3 cut(s) 316, 1740, 2061
Eam1104I CTCTTC 2 cut(s) 918, 1032
EarI CTCTTC 2 cut(s) 918, 1032
Eco130I CCWWGG 2 cut(s) 420, 1416
Eco24I GRGCYC 1 cut(s) 1219
Eco31I GGTCTC 1 cut(s) 1416
Eco32I GATATC 2 cut(s) 87, 463
Eco57I CTGAAG 3 cut(s) 45, 1622, 2103
Eco81I CCTNAGG 1 cut(s) 336
Eco88I CYCGRG 1 cut(s) 1124
EcoNI CCTNNNNNAGG 1 cut(s) 795
EcoRV GATATC 2 cut(s) 87, 463
EcoT14I CCWWGG 2 cut(s) 420, 1416
EcoT38I GRGCYC 1 cut(s) 1219
ErhI CCWWGG 2 cut(s) 420, 1416
Esp3I CGTCTC 1 cut(s) 858
FaqI GGGAC 1 cut(s) 625
FauNDI CATATG 1 cut(s) 591
FbaI TGATCA 1 cut(s) 895
FblI GTMKAC 2 cut(s) 150, 1673
Fnu4HI GCNGC 7 cut(s) 57, 161, 398, 984, 1130, 1133, 1404
FokI GGATG 1 cut(s) 1403
FriOI GRGCYC 1 cut(s) 1219
Fsp4HI GCNGC 7 cut(s) 57, 161, 398, 984, 1130, 1133, 1404
FspBI CTAG 2 cut(s) 1367, 1397
GluI GCNGC 7 cut(s) 57, 161, 398, 984, 1130, 1133, 1404
GsaI CCCAGC 1 cut(s) 1410
GsuI CTGGAG 1 cut(s) 560
HaeIII GGCC 3 cut(s) 768, 1515, 1718
HapII CCGG 1 cut(s) 1031
HincII GTYRAC 1 cut(s) 951
HindII GTYRAC 1 cut(s) 951
HpaII CCGG 1 cut(s) 1031
Hpy166II GTNNAC 7 cut(s) 151, 673, 951, 1587, 1674, 1794, 1998
Hpy188I TCNGA 9 cut(s) 385, 445, 460, 495, 642, 1333, 1534, 1618, 2071
Hpy188III TCNNGA 8 cut(s) 31, 70, 335, 1311, 1444, 1475, 1640, 1876
Hpy8I GTNNAC 7 cut(s) 151, 673, 951, 1587, 1674, 1794, 1998
HpyAV CCTTC 4 cut(s) 218, 265, 1132, 1654
HpyCH4III ACNGT 5 cut(s) 23, 241, 372, 1609, 1678
HpyCH4IV ACGT 4 cut(s) 661, 1745, 1790, 1987
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 2072
HpyF3I CTNAG 7 cut(s) 201, 336, 527, 603, 990, 1205, 1782
HpySE526I ACGT 4 cut(s) 661, 1745, 1790, 1987
Ksp22I TGATCA 1 cut(s) 895
Kzo9I GATC 9 cut(s) 436, 840, 895, 1082, 1316, 1381, 1559, 1618, 1903
LguI GCTCTTC 1 cut(s) 918
LmnI GCTCC 1 cut(s) 261
Lsp1109I GCAGC 6 cut(s) 172, 384, 995, 1116, 1119, 1415
LweI GCATC 9 cut(s) 632, 724, 777, 802, 1101, 1333, 1390, 1723, 2075
MaeI CTAG 2 cut(s) 1367, 1397
MaeII ACGT 4 cut(s) 661, 1745, 1790, 1987
MaeIII GTNAC 3 cut(s) 1010, 1437, 1943
MalI GATC 9 cut(s) 438, 842, 897, 1084, 1318, 1383, 1561, 1620, 1905
MboI GATC 9 cut(s) 436, 840, 895, 1082, 1316, 1381, 1559, 1618, 1903
MboII GAAGA 7 cut(s) 222, 905, 1019, 1669, 1686, 1764, 1993
MfeI CAATTG 1 cut(s) 1077
MflI RGATCY 5 cut(s) 840, 1082, 1316, 1618, 1903
MhlI GDGCHC 2 cut(s) 202, 1219
MlyI GAGTC 4 cut(s) 308, 505, 1031, 1420
MmeI TCCRAC 1 cut(s) 682
MseI TTAA 9 cut(s) 315, 635, 969, 1494, 1611, 1739, 1863, 2060, 2103
MspA1I CMGCKG 1 cut(s) 1406
MspCI CTTAAG 1 cut(s) 2102
MspI CCGG 1 cut(s) 1031
MunI CAATTG 1 cut(s) 1077
Mva1269I GAATGC 3 cut(s) 571, 1350, 1513
MwoI GCNNNNNNNGC 2 cut(s) 62, 2072
NdeI CATATG 1 cut(s) 591
NdeII GATC 9 cut(s) 436, 840, 895, 1082, 1316, 1381, 1559, 1618, 1903
NlaIV GGNNCC 1 cut(s) 257
NmuCI GTSAC 2 cut(s) 1010, 1437
NspI RCATGY 1 cut(s) 411
PciSI GCTCTTC 1 cut(s) 918
PcsI WCGNNNNNNNCGW 1 cut(s) 658
PctI GAATGC 3 cut(s) 571, 1350, 1513
PfeI GAWTC 6 cut(s) 104, 523, 697, 1142, 1571, 2044
PkrI GCNGC 7 cut(s) 58, 162, 399, 985, 1131, 1134, 1405
PleI GAGTC 4 cut(s) 307, 504, 1030, 1420
PpsI GAGTC 4 cut(s) 307, 504, 1030, 1420
PsiI TTATAA 1 cut(s) 1068
Psp1406I AACGTT 2 cut(s) 661, 1790
PspFI CCCAGC 1 cut(s) 1406
PspN4I GGNNCC 1 cut(s) 257
PstI CTGCAG 2 cut(s) 456, 1137
PstNI CAGNNNCTG 1 cut(s) 989
PsuI RGATCY 5 cut(s) 840, 1082, 1316, 1618, 1903
PvuII CAGCTG 1 cut(s) 1406
RsaI GTAC 3 cut(s) 1748, 1916, 1997
RsaNI GTAC 3 cut(s) 1747, 1915, 1996
SapI GCTCTTC 1 cut(s) 918
SaqAI TTAA 9 cut(s) 315, 635, 969, 1494, 1611, 1739, 1863, 2060, 2103
SatI GCNGC 7 cut(s) 57, 161, 398, 984, 1130, 1133, 1404
Sau3AI GATC 9 cut(s) 436, 840, 895, 1082, 1316, 1381, 1559, 1618, 1903
ScaI AGTACT 1 cut(s) 1916
SchI GAGTC 4 cut(s) 308, 505, 1031, 1420
SduI GDGCHC 2 cut(s) 202, 1219
SfaNI GCATC 9 cut(s) 632, 724, 777, 802, 1101, 1333, 1390, 1723, 2075
SfcI CTRYAG 3 cut(s) 237, 452, 1133
SmlI CTYRAG 3 cut(s) 1094, 1309, 2102
SmoI CTYRAG 3 cut(s) 1094, 1309, 2102
SsiI CCGC 3 cut(s) 56, 1374, 1557
SspI AATATT 1 cut(s) 534
SspMI CTAG 2 cut(s) 1367, 1397
StyI CCWWGG 2 cut(s) 420, 1416
TaaI ACNGT 5 cut(s) 23, 241, 372, 1609, 1678
TaiI ACGT 4 cut(s) 664, 1748, 1793, 1990
TaqI TCGA 2 cut(s) 40, 1875
TatI WGTACW 2 cut(s) 1914, 1995
TauI GCSGC 1 cut(s) 59
TfiI GAWTC 6 cut(s) 104, 523, 697, 1142, 1571, 2044
Tru1I TTAA 9 cut(s) 315, 635, 969, 1494, 1611, 1739, 1863, 2060, 2103
Tru9I TTAA 9 cut(s) 315, 635, 969, 1494, 1611, 1739, 1863, 2060, 2103
TscAI CASTG 5 cut(s) 398, 994, 1582, 1786, 2005
TseFI GTSAC 2 cut(s) 1010, 1437
TseI GCWGC 6 cut(s) 160, 397, 983, 1129, 1132, 1403
Tsp45I GTSAC 2 cut(s) 1010, 1437
TspDTI ATGAA 9 cut(s) 16, 162, 303, 334, 369, 1343, 1781, 1994, 2027
TspGWI ACGGA 2 cut(s) 341, 1659
TspRI CASTG 5 cut(s) 398, 994, 1582, 1786, 2005
Vha464I CTTAAG 1 cut(s) 2102
XagI CCTNNNNNAGG 1 cut(s) 795
XapI RAATTY 6 cut(s) 168, 1275, 1525, 1665, 1770, 2056
XceI RCATGY 1 cut(s) 411
XcmI CCANNNNNNNNNTGG 1 cut(s) 851
XmiI GTMKAC 2 cut(s) 150, 1673
XspI CTAG 2 cut(s) 1367, 1397
ZrmI AGTACT 1 cut(s) 1916
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.