Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G17616 |
| fragaria_vesca | FvH4_5g20640 FvH4_5g20640 FvH4_5g20640 |
| malus_domestica | MD14G1082200.v1.1 MD14G1090100.v1.1 |
| prunus_persica | Prupe.2G056400_v2.0.a1 Prupe.7G036400_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr7g0206021 RchiOBHm_Chr7g0206121 RchiOBHm_Chr7g0206131 |
| rosa_laevigata | RLG00000003334 RLG00000003337 |
| rosa_multiflora | Rmu_sc0000076.1_g000009 Rmu_sc0000076.1_g000017 Rmu_sc0004084.1_g000022 |
| rosa_roxburghii | Rroxscaffold_3G00251830 |
| rosa_rugosa | Rorug07G0094500 Rorug07G0094500 |
| rosa_samantha | Rh7AG226700 Rh7BG222900 Rh7CG240700 Rh7DG232700 |
| rosa_wichuraiana | Rw0G012920 Rw7G019570 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1068 |
| AccI | GTMKAC | 2 cut(s) | 150, 1673 |
| AciI | CCGC | 3 cut(s) | 56, 1374, 1557 |
| AclI | AACGTT | 2 cut(s) | 661, 1790 |
| AclWI | GGATC | 4 cut(s) | 835, 1090, 1324, 1567 |
| AcsI | RAATTY | 6 cut(s) | 168, 1275, 1525, 1665, 1770, 2056 |
| AcuI | CTGAAG | 3 cut(s) | 45, 1622, 2103 |
| AfaI | GTAC | 3 cut(s) | 1748, 1916, 1997 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 797 |
| AflII | CTTAAG | 1 cut(s) | 2102 |
| Alw21I | GWGCWC | 1 cut(s) | 202 |
| Alw26I | GTCTC | 5 cut(s) | 858, 1029, 1035, 1416, 1552 |
| AlwI | GGATC | 4 cut(s) | 835, 1090, 1324, 1567 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 989 |
| Ama87I | CYCGRG | 1 cut(s) | 1124 |
| AoxI | GGCC | 3 cut(s) | 766, 1513, 1716 |
| ApeKI | GCWGC | 6 cut(s) | 160, 397, 983, 1129, 1132, 1403 |
| ApoI | RAATTY | 6 cut(s) | 168, 1275, 1525, 1665, 1770, 2056 |
| AvaI | CYCGRG | 1 cut(s) | 1124 |
| AxyI | CCTNAGG | 1 cut(s) | 336 |
| BanII | GRGCYC | 1 cut(s) | 1219 |
| Bbv12I | GWGCWC | 1 cut(s) | 202 |
| BbvI | GCAGC | 6 cut(s) | 172, 384, 995, 1116, 1119, 1415 |
| BccI | CCATC | 3 cut(s) | 1534, 1706, 1954 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 908, 942 |
| BciVI | GTATCC | 1 cut(s) | 1232 |
| BclI | TGATCA | 1 cut(s) | 895 |
| BcoDI | GTCTC | 5 cut(s) | 858, 1029, 1035, 1416, 1552 |
| BfaI | CTAG | 2 cut(s) | 1367, 1397 |
| BfmI | CTRYAG | 3 cut(s) | 237, 452, 1133 |
| BfrI | CTTAAG | 1 cut(s) | 2102 |
| BfuI | GTATCC | 1 cut(s) | 1232 |
| BglII | AGATCT | 2 cut(s) | 1618, 1903 |
| BisI | GCNGC | 7 cut(s) | 57, 161, 398, 984, 1130, 1133, 1404 |
| BlsI | GCNGC | 7 cut(s) | 58, 162, 399, 985, 1131, 1134, 1405 |
| BmcAI | AGTACT | 1 cut(s) | 1916 |
| BmeT110I | CYCGRG | 1 cut(s) | 1124 |
| BmiI | GGNNCC | 1 cut(s) | 257 |
| BmsI | GCATC | 9 cut(s) | 632, 724, 777, 802, 1101, 1333, 1390, 1723, 2075 |
| BpmI | CTGGAG | 1 cut(s) | 560 |
| BpuEI | CTTGAG | 2 cut(s) | 1079, 1294 |
| BsaI | GGTCTC | 1 cut(s) | 1416 |
| BsaJI | CCNNGG | 2 cut(s) | 420, 1416 |
| BsaWI | WCCGGW | 1 cut(s) | 1030 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 797 |
| Bse1I | ACTGG | 3 cut(s) | 398, 543, 1575 |
| Bse21I | CCTNAGG | 1 cut(s) | 336 |
| BseDI | CCNNGG | 2 cut(s) | 420, 1416 |
| BseGI | GGATG | 1 cut(s) | 1396 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 797 |
| BseMII | CTCAG | 5 cut(s) | 215, 327, 594, 981, 1773 |
| BseNI | ACTGG | 3 cut(s) | 398, 543, 1575 |
| BseXI | GCAGC | 6 cut(s) | 172, 384, 995, 1116, 1119, 1415 |
| BseYI | CCCAGC | 1 cut(s) | 1406 |
| BshFI | GGCC | 3 cut(s) | 768, 1515, 1718 |
| BsiHKAI | GWGCWC | 1 cut(s) | 202 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1124 |
| BsiSI | CCGG | 1 cut(s) | 1031 |
| BslFI | GGGAC | 1 cut(s) | 625 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 797 |
| BsmAI | GTCTC | 5 cut(s) | 858, 1029, 1035, 1416, 1552 |
| BsmBI | CGTCTC | 1 cut(s) | 858 |
| BsmFI | GGGAC | 1 cut(s) | 625 |
| BsmI | GAATGC | 3 cut(s) | 571, 1350, 1513 |
| BsnI | GGCC | 3 cut(s) | 768, 1515, 1718 |
| Bso31I | GGTCTC | 1 cut(s) | 1416 |
| BsoBI | CYCGRG | 1 cut(s) | 1124 |
| Bsp1286I | GDGCHC | 2 cut(s) | 202, 1219 |
| Bsp1407I | TGTACA | 1 cut(s) | 1995 |
| Bsp143I | GATC | 9 cut(s) | 436, 840, 895, 1082, 1316, 1381, 1559, 1618, 1903 |
| BspACI | CCGC | 3 cut(s) | 56, 1374, 1557 |
| BspANI | GGCC | 3 cut(s) | 768, 1515, 1718 |
| BspCNI | CTCAG | 5 cut(s) | 214, 328, 595, 982, 1774 |
| BspLI | GGNNCC | 1 cut(s) | 257 |
| BspMAI | CTGCAG | 2 cut(s) | 456, 1137 |
| BspPI | GGATC | 4 cut(s) | 835, 1090, 1324, 1567 |
| BspQI | GCTCTTC | 1 cut(s) | 918 |
| BspTI | CTTAAG | 1 cut(s) | 2102 |
| BspTNI | GGTCTC | 1 cut(s) | 1416 |
| BsrGI | TGTACA | 1 cut(s) | 1995 |
| BsrI | ACTGG | 3 cut(s) | 398, 543, 1575 |
| BssECI | CCNNGG | 2 cut(s) | 420, 1416 |
| BssMI | GATC | 9 cut(s) | 436, 840, 895, 1082, 1316, 1381, 1559, 1618, 1903 |
| BssNAI | GTATAC | 1 cut(s) | 151 |
| BssT1I | CCWWGG | 2 cut(s) | 420, 1416 |
| Bst1107I | GTATAC | 1 cut(s) | 151 |
| Bst4CI | ACNGT | 5 cut(s) | 23, 241, 372, 1609, 1678 |
| Bst6I | CTCTTC | 2 cut(s) | 918, 1032 |
| BstAFI | CTTAAG | 1 cut(s) | 2102 |
| BstAUI | TGTACA | 1 cut(s) | 1995 |
| BstC8I | GCNNGC | 5 cut(s) | 513, 739, 1348, 1513, 1517 |
| BstDEI | CTNAG | 7 cut(s) | 201, 336, 527, 603, 990, 1205, 1782 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 795 |
| BstF5I | GGATG | 1 cut(s) | 1396 |
| BstKTI | GATC | 9 cut(s) | 439, 843, 898, 1085, 1319, 1384, 1562, 1621, 1906 |
| BstMAI | GTCTC | 5 cut(s) | 858, 1029, 1035, 1416, 1552 |
| BstMBI | GATC | 9 cut(s) | 436, 840, 895, 1082, 1316, 1381, 1559, 1618, 1903 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 62, 2072 |
| BstNSI | RCATGY | 1 cut(s) | 411 |
| BstSFI | CTRYAG | 3 cut(s) | 237, 452, 1133 |
| BstV1I | GCAGC | 6 cut(s) | 172, 384, 995, 1116, 1119, 1415 |
| BstX2I | RGATCY | 5 cut(s) | 840, 1082, 1316, 1618, 1903 |
| BstYI | RGATCY | 5 cut(s) | 840, 1082, 1316, 1618, 1903 |
| BstZ17I | GTATAC | 1 cut(s) | 151 |
| Bsu36I | CCTNAGG | 1 cut(s) | 336 |
| BsuI | GTATCC | 1 cut(s) | 1232 |
| BsuRI | GGCC | 3 cut(s) | 768, 1515, 1718 |
| BtsCI | GGATG | 1 cut(s) | 1396 |
| BtsIMutI | CAGTG | 5 cut(s) | 391, 987, 1582, 1779, 1998 |
| Cac8I | GCNNGC | 5 cut(s) | 513, 739, 1348, 1513, 1517 |
| CaiI | CAGNNNCTG | 1 cut(s) | 989 |
| Csp6I | GTAC | 3 cut(s) | 1747, 1915, 1996 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 976, 1011 |
| CviQI | GTAC | 3 cut(s) | 1747, 1915, 1996 |
| DdeI | CTNAG | 7 cut(s) | 201, 336, 527, 603, 990, 1205, 1782 |
| DpnI | GATC | 9 cut(s) | 438, 842, 897, 1084, 1318, 1383, 1561, 1620, 1905 |
| DpnII | GATC | 9 cut(s) | 436, 840, 895, 1082, 1316, 1381, 1559, 1618, 1903 |
| DraI | TTTAAA | 3 cut(s) | 316, 1740, 2061 |
| Eam1104I | CTCTTC | 2 cut(s) | 918, 1032 |
| EarI | CTCTTC | 2 cut(s) | 918, 1032 |
| Eco130I | CCWWGG | 2 cut(s) | 420, 1416 |
| Eco24I | GRGCYC | 1 cut(s) | 1219 |
| Eco31I | GGTCTC | 1 cut(s) | 1416 |
| Eco32I | GATATC | 2 cut(s) | 87, 463 |
| Eco57I | CTGAAG | 3 cut(s) | 45, 1622, 2103 |
| Eco81I | CCTNAGG | 1 cut(s) | 336 |
| Eco88I | CYCGRG | 1 cut(s) | 1124 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 795 |
| EcoRV | GATATC | 2 cut(s) | 87, 463 |
| EcoT14I | CCWWGG | 2 cut(s) | 420, 1416 |
| EcoT38I | GRGCYC | 1 cut(s) | 1219 |
| ErhI | CCWWGG | 2 cut(s) | 420, 1416 |
| Esp3I | CGTCTC | 1 cut(s) | 858 |
| FaqI | GGGAC | 1 cut(s) | 625 |
| FauNDI | CATATG | 1 cut(s) | 591 |
| FbaI | TGATCA | 1 cut(s) | 895 |
| FblI | GTMKAC | 2 cut(s) | 150, 1673 |
| Fnu4HI | GCNGC | 7 cut(s) | 57, 161, 398, 984, 1130, 1133, 1404 |
| FokI | GGATG | 1 cut(s) | 1403 |
| FriOI | GRGCYC | 1 cut(s) | 1219 |
| Fsp4HI | GCNGC | 7 cut(s) | 57, 161, 398, 984, 1130, 1133, 1404 |
| FspBI | CTAG | 2 cut(s) | 1367, 1397 |
| GluI | GCNGC | 7 cut(s) | 57, 161, 398, 984, 1130, 1133, 1404 |
| GsaI | CCCAGC | 1 cut(s) | 1410 |
| GsuI | CTGGAG | 1 cut(s) | 560 |
| HaeIII | GGCC | 3 cut(s) | 768, 1515, 1718 |
| HapII | CCGG | 1 cut(s) | 1031 |
| HincII | GTYRAC | 1 cut(s) | 951 |
| HindII | GTYRAC | 1 cut(s) | 951 |
| HpaII | CCGG | 1 cut(s) | 1031 |
| Hpy166II | GTNNAC | 7 cut(s) | 151, 673, 951, 1587, 1674, 1794, 1998 |
| Hpy188I | TCNGA | 9 cut(s) | 385, 445, 460, 495, 642, 1333, 1534, 1618, 2071 |
| Hpy188III | TCNNGA | 8 cut(s) | 31, 70, 335, 1311, 1444, 1475, 1640, 1876 |
| Hpy8I | GTNNAC | 7 cut(s) | 151, 673, 951, 1587, 1674, 1794, 1998 |
| HpyAV | CCTTC | 4 cut(s) | 218, 265, 1132, 1654 |
| HpyCH4III | ACNGT | 5 cut(s) | 23, 241, 372, 1609, 1678 |
| HpyCH4IV | ACGT | 4 cut(s) | 661, 1745, 1790, 1987 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 62, 2072 |
| HpyF3I | CTNAG | 7 cut(s) | 201, 336, 527, 603, 990, 1205, 1782 |
| HpySE526I | ACGT | 4 cut(s) | 661, 1745, 1790, 1987 |
| Ksp22I | TGATCA | 1 cut(s) | 895 |
| Kzo9I | GATC | 9 cut(s) | 436, 840, 895, 1082, 1316, 1381, 1559, 1618, 1903 |
| LguI | GCTCTTC | 1 cut(s) | 918 |
| LmnI | GCTCC | 1 cut(s) | 261 |
| Lsp1109I | GCAGC | 6 cut(s) | 172, 384, 995, 1116, 1119, 1415 |
| LweI | GCATC | 9 cut(s) | 632, 724, 777, 802, 1101, 1333, 1390, 1723, 2075 |
| MaeI | CTAG | 2 cut(s) | 1367, 1397 |
| MaeII | ACGT | 4 cut(s) | 661, 1745, 1790, 1987 |
| MaeIII | GTNAC | 3 cut(s) | 1010, 1437, 1943 |
| MalI | GATC | 9 cut(s) | 438, 842, 897, 1084, 1318, 1383, 1561, 1620, 1905 |
| MboI | GATC | 9 cut(s) | 436, 840, 895, 1082, 1316, 1381, 1559, 1618, 1903 |
| MboII | GAAGA | 7 cut(s) | 222, 905, 1019, 1669, 1686, 1764, 1993 |
| MfeI | CAATTG | 1 cut(s) | 1077 |
| MflI | RGATCY | 5 cut(s) | 840, 1082, 1316, 1618, 1903 |
| MhlI | GDGCHC | 2 cut(s) | 202, 1219 |
| MlyI | GAGTC | 4 cut(s) | 308, 505, 1031, 1420 |
| MmeI | TCCRAC | 1 cut(s) | 682 |
| MseI | TTAA | 9 cut(s) | 315, 635, 969, 1494, 1611, 1739, 1863, 2060, 2103 |
| MspA1I | CMGCKG | 1 cut(s) | 1406 |
| MspCI | CTTAAG | 1 cut(s) | 2102 |
| MspI | CCGG | 1 cut(s) | 1031 |
| MunI | CAATTG | 1 cut(s) | 1077 |
| Mva1269I | GAATGC | 3 cut(s) | 571, 1350, 1513 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 62, 2072 |
| NdeI | CATATG | 1 cut(s) | 591 |
| NdeII | GATC | 9 cut(s) | 436, 840, 895, 1082, 1316, 1381, 1559, 1618, 1903 |
| NlaIV | GGNNCC | 1 cut(s) | 257 |
| NmuCI | GTSAC | 2 cut(s) | 1010, 1437 |
| NspI | RCATGY | 1 cut(s) | 411 |
| PciSI | GCTCTTC | 1 cut(s) | 918 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 658 |
| PctI | GAATGC | 3 cut(s) | 571, 1350, 1513 |
| PfeI | GAWTC | 6 cut(s) | 104, 523, 697, 1142, 1571, 2044 |
| PkrI | GCNGC | 7 cut(s) | 58, 162, 399, 985, 1131, 1134, 1405 |
| PleI | GAGTC | 4 cut(s) | 307, 504, 1030, 1420 |
| PpsI | GAGTC | 4 cut(s) | 307, 504, 1030, 1420 |
| PsiI | TTATAA | 1 cut(s) | 1068 |
| Psp1406I | AACGTT | 2 cut(s) | 661, 1790 |
| PspFI | CCCAGC | 1 cut(s) | 1406 |
| PspN4I | GGNNCC | 1 cut(s) | 257 |
| PstI | CTGCAG | 2 cut(s) | 456, 1137 |
| PstNI | CAGNNNCTG | 1 cut(s) | 989 |
| PsuI | RGATCY | 5 cut(s) | 840, 1082, 1316, 1618, 1903 |
| PvuII | CAGCTG | 1 cut(s) | 1406 |
| RsaI | GTAC | 3 cut(s) | 1748, 1916, 1997 |
| RsaNI | GTAC | 3 cut(s) | 1747, 1915, 1996 |
| SapI | GCTCTTC | 1 cut(s) | 918 |
| SaqAI | TTAA | 9 cut(s) | 315, 635, 969, 1494, 1611, 1739, 1863, 2060, 2103 |
| SatI | GCNGC | 7 cut(s) | 57, 161, 398, 984, 1130, 1133, 1404 |
| Sau3AI | GATC | 9 cut(s) | 436, 840, 895, 1082, 1316, 1381, 1559, 1618, 1903 |
| ScaI | AGTACT | 1 cut(s) | 1916 |
| SchI | GAGTC | 4 cut(s) | 308, 505, 1031, 1420 |
| SduI | GDGCHC | 2 cut(s) | 202, 1219 |
| SfaNI | GCATC | 9 cut(s) | 632, 724, 777, 802, 1101, 1333, 1390, 1723, 2075 |
| SfcI | CTRYAG | 3 cut(s) | 237, 452, 1133 |
| SmlI | CTYRAG | 3 cut(s) | 1094, 1309, 2102 |
| SmoI | CTYRAG | 3 cut(s) | 1094, 1309, 2102 |
| SsiI | CCGC | 3 cut(s) | 56, 1374, 1557 |
| SspI | AATATT | 1 cut(s) | 534 |
| SspMI | CTAG | 2 cut(s) | 1367, 1397 |
| StyI | CCWWGG | 2 cut(s) | 420, 1416 |
| TaaI | ACNGT | 5 cut(s) | 23, 241, 372, 1609, 1678 |
| TaiI | ACGT | 4 cut(s) | 664, 1748, 1793, 1990 |
| TaqI | TCGA | 2 cut(s) | 40, 1875 |
| TatI | WGTACW | 2 cut(s) | 1914, 1995 |
| TauI | GCSGC | 1 cut(s) | 59 |
| TfiI | GAWTC | 6 cut(s) | 104, 523, 697, 1142, 1571, 2044 |
| Tru1I | TTAA | 9 cut(s) | 315, 635, 969, 1494, 1611, 1739, 1863, 2060, 2103 |
| Tru9I | TTAA | 9 cut(s) | 315, 635, 969, 1494, 1611, 1739, 1863, 2060, 2103 |
| TscAI | CASTG | 5 cut(s) | 398, 994, 1582, 1786, 2005 |
| TseFI | GTSAC | 2 cut(s) | 1010, 1437 |
| TseI | GCWGC | 6 cut(s) | 160, 397, 983, 1129, 1132, 1403 |
| Tsp45I | GTSAC | 2 cut(s) | 1010, 1437 |
| TspDTI | ATGAA | 9 cut(s) | 16, 162, 303, 334, 369, 1343, 1781, 1994, 2027 |
| TspGWI | ACGGA | 2 cut(s) | 341, 1659 |
| TspRI | CASTG | 5 cut(s) | 398, 994, 1582, 1786, 2005 |
| Vha464I | CTTAAG | 1 cut(s) | 2102 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 795 |
| XapI | RAATTY | 6 cut(s) | 168, 1275, 1525, 1665, 1770, 2056 |
| XceI | RCATGY | 1 cut(s) | 411 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 851 |
| XmiI | GTMKAC | 2 cut(s) | 150, 1673 |
| XspI | CTAG | 2 cut(s) | 1367, 1397 |
| ZrmI | AGTACT | 1 cut(s) | 1916 |