Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007437

Physical Location & Seq

Genomic Coordinates Forward (+)

23764873 .. 23765226

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18445

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGAAACAGCTGAGGCTCCCATGGGCTATAGTACCTGTAAGTCACTCCTGACAGCCTATTACAAAAGAAAAATGTTTCCAGAAGCAAAGGCATTGCTTAAACAGATGAGAAAGGCTGGTTTGCTTGTAAATTTATCTGATGAGATGGTTGCCTCGACATGTCTATCAGTAGTAGACTCAACTGCCCTTTGTACAAGCGCATCAATTTCCACCAATAAATCTGATCTGGCAAATGCTTTGGTTCGGGAAATGAGATTTGAGAAAGGGGAAATTCCTTCTAGGGTTTATCAGTTCAATTCTTCCATCAACTTTTTTTGCAAGGCCAAAATGATTGATGATGCTCTAAAGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

117

Amino Acids

12.97

Weight (kDa)

8.93

Isoelectric Point (pI)

29.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17616
fragaria_vesca	FvH4_5g20640 FvH4_5g20640 FvH4_5g20640
malus_domestica	MD14G1082200.v1.1 MD14G1090100.v1.1
prunus_persica	Prupe.2G056400_v2.0.a1 Prupe.7G036400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0206021 RchiOBHm_Chr7g0206121 RchiOBHm_Chr7g0206131
rosa_laevigata	RLG00000003334 RLG00000003337
rosa_multiflora	Rmu_sc0000076.1_g000009 Rmu_sc0000076.1_g000017 Rmu_sc0004084.1_g000022
rosa_roxburghii	Rroxscaffold_3G00251830
rosa_rugosa	Rorug07G0094500 Rorug07G0094500
rosa_samantha	Rh7AG226700 Rh7BG222900 Rh7CG240700 Rh7DG232700
rosa_wichuraiana	Rw0G012920 Rw7G019570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	174
AcsI	RAATTY	2 cut(s)	130, 270
AfaI	GTAC	2 cut(s)	34, 193
AflIII	ACRYGT	1 cut(s)	158
AgsI	TTSAA	1 cut(s)	295
AluBI	AGCT	1 cut(s)	11
AluI	AGCT	1 cut(s)	11
AoxI	GGCC	1 cut(s)	321
ApoI	RAATTY	2 cut(s)	130, 270
AspLEI	GCGC	1 cut(s)	200
BbvCI	CCTCAGC	1 cut(s)	12
BccI	CCATC	2 cut(s)	139, 311
BfaI	CTAG	1 cut(s)	279
BfmI	CTRYAG	1 cut(s)	28
BmiI	GGNNCC	1 cut(s)	18
BmsI	GCATC	2 cut(s)	209, 328
Bpu10I	CCTNAGC	1 cut(s)	12
BsaJI	CCNNGG	1 cut(s)	21
Bse3DI	GCAATG	1 cut(s)	92
BseDI	CCNNGG	1 cut(s)	21
BseMI	GCAATG	1 cut(s)	92
BshFI	GGCC	1 cut(s)	323
BsnI	GGCC	1 cut(s)	323
Bsp1407I	TGTACA	1 cut(s)	191
Bsp143I	GATC	1 cut(s)	223
Bsp19I	CCATGG	1 cut(s)	21
BspANI	GGCC	1 cut(s)	323
BspCNI	CTCAG	1 cut(s)	4
BspLI	GGNNCC	1 cut(s)	18
BsrDI	GCAATG	1 cut(s)	92
BsrGI	TGTACA	1 cut(s)	191
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	1 cut(s)	223
BssT1I	CCWWGG	1 cut(s)	21
BstAUI	TGTACA	1 cut(s)	191
BstDEI	CTNAG	1 cut(s)	12
BstDSI	CCRYGG	1 cut(s)	21
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	1 cut(s)	226
BstMBI	GATC	1 cut(s)	223
BstNSI	RCATGY	1 cut(s)	162
BstSFI	CTRYAG	1 cut(s)	28
BsuRI	GGCC	1 cut(s)	323
BtgI	CCRYGG	1 cut(s)	21
CfoI	GCGC	1 cut(s)	200
Csp6I	GTAC	2 cut(s)	33, 192
CviAII	CATG	2 cut(s)	22, 159
CviJI	RGCY	6 cut(s)	11, 17, 27, 56, 116, 323
CviKI_1	RGCY	6 cut(s)	11, 17, 27, 56, 116, 323
CviQI	GTAC	2 cut(s)	33, 192
DdeI	CTNAG	1 cut(s)	12
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
Eco130I	CCWWGG	1 cut(s)	21
EcoT14I	CCWWGG	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	21
FaeI	CATG	2 cut(s)	25, 162
FaiI	YATR	4 cut(s)	23, 30, 160, 352
FatI	CATG	2 cut(s)	21, 158
FblI	GTMKAC	1 cut(s)	174
FspBI	CTAG	1 cut(s)	279
GlaI	GCGC	1 cut(s)	199
HaeIII	GGCC	1 cut(s)	323
HhaI	GCGC	1 cut(s)	200
Hin1II	CATG	2 cut(s)	25, 162
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HinfI	GANTC	1 cut(s)	176
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	2 cut(s)	139, 223
Hpy188III	TCNNGA	3 cut(s)	49, 80, 245
Hpy8I	GTNNAC	1 cut(s)	175
HpyAV	CCTTC	1 cut(s)	285
HpyCH4V	TGCA	1 cut(s)	318
HpyF3I	CTNAG	1 cut(s)	12
Hsp92II	CATG	2 cut(s)	25, 162
HspAI	GCGC	1 cut(s)	198
Kzo9I	GATC	1 cut(s)	223
LmnI	GCTCC	1 cut(s)	22
LpnPI	CCDG	5 cut(s)	49, 62, 93, 102, 212
LweI	GCATC	2 cut(s)	209, 328
MaeI	CTAG	1 cut(s)	279
MaeIII	GTNAC	1 cut(s)	42
MalI	GATC	1 cut(s)	225
MboI	GATC	1 cut(s)	223
MboII	GAAGA	1 cut(s)	291
MluCI	AATT	4 cut(s)	130, 204, 270, 295
MlyI	GAGTC	1 cut(s)	170
MnlI	CCTC	2 cut(s)	7, 163
MseI	TTAA	1 cut(s)	99
MspA1I	CMGCKG	1 cut(s)	11
NcoI	CCATGG	1 cut(s)	21
NdeII	GATC	1 cut(s)	223
NlaIII	CATG	2 cut(s)	25, 162
NlaIV	GGNNCC	1 cut(s)	18
NmuCI	GTSAC	1 cut(s)	42
NspI	RCATGY	1 cut(s)	162
PciI	ACATGT	1 cut(s)	158
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
PscI	ACATGT	1 cut(s)	158
PspN4I	GGNNCC	1 cut(s)	18
PvuII	CAGCTG	1 cut(s)	11
RsaI	GTAC	2 cut(s)	34, 193
RsaNI	GTAC	2 cut(s)	33, 192
SaqAI	TTAA	1 cut(s)	99
Sau3AI	GATC	1 cut(s)	223
SchI	GAGTC	1 cut(s)	170
SetI	ASST	2 cut(s)	13, 38
SfaNI	GCATC	2 cut(s)	209, 328
SfcI	CTRYAG	1 cut(s)	28
Sse9I	AATT	4 cut(s)	130, 204, 270, 295
SspMI	CTAG	1 cut(s)	279
StyI	CCWWGG	1 cut(s)	21
TaqI	TCGA	1 cut(s)	155
TasI	AATT	4 cut(s)	130, 204, 270, 295
TatI	WGTACW	1 cut(s)	191
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TseFI	GTSAC	1 cut(s)	42
Tsp45I	GTSAC	1 cut(s)	42
XapI	RAATTY	2 cut(s)	130, 270
XceI	RCATGY	1 cut(s)	162
XmiI	GTMKAC	1 cut(s)	174
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.