Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G17616 |
| fragaria_vesca | FvH4_5g20640 FvH4_5g20640 FvH4_5g20640 |
| malus_domestica | MD14G1082200.v1.1 MD14G1090100.v1.1 |
| prunus_persica | Prupe.2G056400_v2.0.a1 Prupe.7G036400_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr7g0206021 RchiOBHm_Chr7g0206121 RchiOBHm_Chr7g0206131 |
| rosa_laevigata | RLG00000003334 RLG00000003337 |
| rosa_multiflora | Rmu_sc0000076.1_g000009 Rmu_sc0000076.1_g000017 Rmu_sc0004084.1_g000022 |
| rosa_roxburghii | Rroxscaffold_3G00251830 |
| rosa_rugosa | Rorug07G0094500 Rorug07G0094500 |
| rosa_samantha | Rh7AG226700 Rh7BG222900 Rh7CG240700 Rh7DG232700 |
| rosa_wichuraiana | Rw0G012920 Rw7G019570 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 538 |
| AccII | CGCG | 1 cut(s) | 511 |
| AciI | CCGC | 2 cut(s) | 1001, 1269 |
| AclWI | GGATC | 4 cut(s) | 853, 883, 1108, 1342 |
| AcoI | YGGCCR | 2 cut(s) | 874, 1002 |
| AcsI | RAATTY | 6 cut(s) | 140, 186, 1293, 1782, 1897, 2068 |
| AcuI | CTGAAG | 1 cut(s) | 63 |
| AcyI | GRCGYC | 1 cut(s) | 55 |
| AdeI | CACNNNGTG | 1 cut(s) | 301 |
| AfaI | GTAC | 5 cut(s) | 1606, 1849, 1928, 2009, 2027 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 815, 1993 |
| AflIII | ACRYGT | 1 cut(s) | 1601 |
| AjnI | CCWGG | 1 cut(s) | 483 |
| Alw26I | GTCTC | 5 cut(s) | 876, 1047, 1053, 1570, 2090 |
| AlwI | GGATC | 4 cut(s) | 853, 883, 1108, 1342 |
| Ama87I | CYCGRG | 2 cut(s) | 198, 621 |
| AoxI | GGCC | 5 cut(s) | 784, 874, 1002, 1438, 1728 |
| ApeKI | GCWGC | 3 cut(s) | 1147, 1150, 1421 |
| ApoI | RAATTY | 6 cut(s) | 140, 186, 1293, 1782, 1897, 2068 |
| AseI | ATTAAT | 1 cut(s) | 1371 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 126, 1069 |
| AspLEI | GCGC | 1 cut(s) | 511 |
| AspS9I | GGNCC | 1 cut(s) | 1438 |
| AsuHPI | GGTGA | 1 cut(s) | 727 |
| AsuNHI | GCTAGC | 1 cut(s) | 212 |
| AvaI | CYCGRG | 2 cut(s) | 198, 621 |
| AxyI | CCTNAGG | 1 cut(s) | 354 |
| BalI | TGGCCA | 1 cut(s) | 876 |
| BanII | GRGCYC | 2 cut(s) | 1237, 1432 |
| BbsI | GAAGAC | 1 cut(s) | 1760 |
| BbvI | GCAGC | 3 cut(s) | 1134, 1137, 1433 |
| BccI | CCATC | 4 cut(s) | 1552, 1718, 1732, 1966 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 926, 960 |
| BciT130I | CCWGG | 1 cut(s) | 485 |
| BciVI | GTATCC | 2 cut(s) | 1250, 1267 |
| BclI | TGATCA | 1 cut(s) | 913 |
| BcoDI | GTCTC | 5 cut(s) | 876, 1047, 1053, 1570, 2090 |
| BfaI | CTAG | 4 cut(s) | 213, 1238, 1385, 1586 |
| BfmI | CTRYAG | 1 cut(s) | 470 |
| BfuAI | ACCTGC | 1 cut(s) | 538 |
| BfuI | GTATCC | 2 cut(s) | 1250, 1267 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 229 |
| BglII | AGATCT | 2 cut(s) | 1636, 1915 |
| BisI | GCNGC | 4 cut(s) | 1002, 1148, 1151, 1422 |
| BlsI | GCNGC | 4 cut(s) | 1003, 1149, 1152, 1423 |
| BmcAI | AGTACT | 1 cut(s) | 1928 |
| Bme1390I | CCNGG | 1 cut(s) | 485 |
| BmeT110I | CYCGRG | 2 cut(s) | 198, 621 |
| BmgT120I | GGNCC | 1 cut(s) | 1438 |
| BmiI | GGNNCC | 2 cut(s) | 247, 1431 |
| BmrFI | CCNGG | 1 cut(s) | 485 |
| BmtI | GCTAGC | 1 cut(s) | 216 |
| BpiI | GAAGAC | 1 cut(s) | 1760 |
| BpmI | CTGGAG | 2 cut(s) | 578, 667 |
| Bpu10I | CCTNAGC | 2 cut(s) | 505, 1143 |
| BpuEI | CTTGAG | 1 cut(s) | 1097 |
| BsaHI | GRCGYC | 1 cut(s) | 55 |
| BsaJI | CCNNGG | 1 cut(s) | 1434 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 815, 1993 |
| Bse1I | ACTGG | 5 cut(s) | 416, 561, 684, 1626, 1696 |
| Bse21I | CCTNAGG | 1 cut(s) | 354 |
| BseBI | CCWGG | 1 cut(s) | 485 |
| BseDI | CCNNGG | 1 cut(s) | 1434 |
| BseGI | GGATG | 6 cut(s) | 641, 699, 1414, 1423, 1684, 1747 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 815, 1993 |
| BseMII | CTCAG | 7 cut(s) | 122, 345, 860, 999, 1134, 1785, 2085 |
| BseNI | ACTGG | 5 cut(s) | 416, 561, 684, 1626, 1696 |
| BseXI | GCAGC | 3 cut(s) | 1134, 1137, 1433 |
| BseYI | CCCAGC | 2 cut(s) | 237, 1424 |
| Bsh1236I | CGCG | 1 cut(s) | 511 |
| BshFI | GGCC | 5 cut(s) | 786, 876, 1004, 1440, 1730 |
| BsiHKCI | CYCGRG | 2 cut(s) | 198, 621 |
| BslFI | GGGAC | 2 cut(s) | 643, 1883 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 815, 1993 |
| BsmAI | GTCTC | 5 cut(s) | 876, 1047, 1053, 1570, 2090 |
| BsmBI | CGTCTC | 1 cut(s) | 876 |
| BsmFI | GGGAC | 2 cut(s) | 643, 1883 |
| BsmI | GAATGC | 1 cut(s) | 1773 |
| BsnI | GGCC | 5 cut(s) | 786, 876, 1004, 1440, 1730 |
| BsoBI | CYCGRG | 2 cut(s) | 198, 621 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1237, 1432 |
| Bsp1407I | TGTACA | 3 cut(s) | 1604, 2007, 2025 |
| Bsp143I | GATC | 9 cut(s) | 458, 858, 888, 913, 1100, 1334, 1636, 1857, 1915 |
| Bsp19I | CCATGG | 1 cut(s) | 1434 |
| BspACI | CCGC | 2 cut(s) | 1001, 1269 |
| BspANI | GGCC | 5 cut(s) | 786, 876, 1004, 1440, 1730 |
| BspCNI | CTCAG | 7 cut(s) | 123, 346, 861, 1000, 1135, 1786, 2086 |
| BspFNI | CGCG | 1 cut(s) | 511 |
| BspHI | TCATGA | 1 cut(s) | 1396 |
| BspLI | GGNNCC | 2 cut(s) | 247, 1431 |
| BspMI | ACCTGC | 1 cut(s) | 538 |
| BspOI | GCTAGC | 1 cut(s) | 216 |
| BspPI | GGATC | 4 cut(s) | 853, 883, 1108, 1342 |
| BsrGI | TGTACA | 3 cut(s) | 1604, 2007, 2025 |
| BsrI | ACTGG | 5 cut(s) | 416, 561, 684, 1626, 1696 |
| BssECI | CCNNGG | 1 cut(s) | 1434 |
| BssMI | GATC | 9 cut(s) | 458, 858, 888, 913, 1100, 1334, 1636, 1857, 1915 |
| BssNI | GRCGYC | 1 cut(s) | 55 |
| BssT1I | CCWWGG | 1 cut(s) | 1434 |
| Bst2UI | CCWGG | 1 cut(s) | 485 |
| Bst4CI | ACNGT | 2 cut(s) | 390, 474 |
| Bst6I | CTCTTC | 1 cut(s) | 1050 |
| BstACI | GRCGYC | 1 cut(s) | 55 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1138 |
| BstAUI | TGTACA | 3 cut(s) | 1604, 2007, 2025 |
| BstC8I | GCNNGC | 3 cut(s) | 214, 1283, 1366 |
| BstDSI | CCRYGG | 1 cut(s) | 1434 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 813, 1991 |
| BstF5I | GGATG | 6 cut(s) | 641, 699, 1414, 1423, 1684, 1747 |
| BstFNI | CGCG | 1 cut(s) | 511 |
| BstHHI | GCGC | 1 cut(s) | 511 |
| BstKTI | GATC | 9 cut(s) | 461, 861, 891, 916, 1103, 1337, 1639, 1860, 1918 |
| BstMAI | GTCTC | 5 cut(s) | 876, 1047, 1053, 1570, 2090 |
| BstMBI | GATC | 9 cut(s) | 458, 858, 888, 913, 1100, 1334, 1636, 1857, 1915 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 229, 718, 1138, 1147, 1427, 2084 |
| BstNI | CCWGG | 1 cut(s) | 485 |
| BstNSI | RCATGY | 3 cut(s) | 429, 1605, 2008 |
| BstSCI | CCNGG | 1 cut(s) | 483 |
| BstSFI | CTRYAG | 1 cut(s) | 470 |
| BstUI | CGCG | 1 cut(s) | 511 |
| BstV1I | GCAGC | 3 cut(s) | 1134, 1137, 1433 |
| BstV2I | GAAGAC | 1 cut(s) | 1760 |
| BstX2I | RGATCY | 6 cut(s) | 858, 888, 1100, 1334, 1636, 1915 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1738 |
| BstYI | RGATCY | 6 cut(s) | 858, 888, 1100, 1334, 1636, 1915 |
| Bsu36I | CCTNAGG | 1 cut(s) | 354 |
| BsuI | GTATCC | 2 cut(s) | 1250, 1267 |
| BsuRI | GGCC | 5 cut(s) | 786, 876, 1004, 1440, 1730 |
| BtgI | CCRYGG | 1 cut(s) | 1434 |
| BtsCI | GGATG | 6 cut(s) | 641, 699, 1414, 1423, 1684, 1747 |
| BtsIMutI | CAGTG | 7 cut(s) | 381, 409, 691, 1005, 1791, 1980, 2010 |
| BveI | ACCTGC | 1 cut(s) | 538 |
| Cac8I | GCNNGC | 3 cut(s) | 214, 1283, 1366 |
| CciI | TCATGA | 1 cut(s) | 1396 |
| CfoI | GCGC | 1 cut(s) | 511 |
| Cfr13I | GGNCC | 1 cut(s) | 1438 |
| CseI | GACGC | 1 cut(s) | 44 |
| Csp6I | GTAC | 5 cut(s) | 1605, 1848, 1927, 2008, 2026 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 994, 1029 |
| CviQI | GTAC | 5 cut(s) | 1605, 1848, 1927, 2008, 2026 |
| DpnI | GATC | 9 cut(s) | 460, 860, 890, 915, 1102, 1336, 1638, 1859, 1917 |
| DpnII | GATC | 9 cut(s) | 458, 858, 888, 913, 1100, 1334, 1636, 1857, 1915 |
| DraI | TTTAAA | 3 cut(s) | 334, 769, 2073 |
| DraIII | CACNNNGTG | 1 cut(s) | 301 |
| EaeI | YGGCCR | 2 cut(s) | 874, 1002 |
| Eam1104I | CTCTTC | 1 cut(s) | 1050 |
| EarI | CTCTTC | 1 cut(s) | 1050 |
| Eco130I | CCWWGG | 1 cut(s) | 1434 |
| Eco24I | GRGCYC | 2 cut(s) | 1237, 1432 |
| Eco32I | GATATC | 1 cut(s) | 481 |
| Eco57I | CTGAAG | 1 cut(s) | 63 |
| Eco81I | CCTNAGG | 1 cut(s) | 354 |
| Eco88I | CYCGRG | 2 cut(s) | 198, 621 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 813, 1991 |
| EcoRII | CCWGG | 1 cut(s) | 483 |
| EcoRV | GATATC | 1 cut(s) | 481 |
| EcoT14I | CCWWGG | 1 cut(s) | 1434 |
| EcoT38I | GRGCYC | 2 cut(s) | 1237, 1432 |
| ErhI | CCWWGG | 1 cut(s) | 1434 |
| Esp3I | CGTCTC | 1 cut(s) | 876 |
| FaqI | GGGAC | 2 cut(s) | 643, 1883 |
| FauI | CCCGC | 1 cut(s) | 1262 |
| FauNDI | CATATG | 1 cut(s) | 609 |
| FbaI | TGATCA | 1 cut(s) | 913 |
| Fnu4HI | GCNGC | 4 cut(s) | 1002, 1148, 1151, 1422 |
| FokI | GGATG | 6 cut(s) | 628, 686, 1421, 1430, 1691, 1754 |
| FriOI | GRGCYC | 2 cut(s) | 1237, 1432 |
| Fsp4HI | GCNGC | 4 cut(s) | 1002, 1148, 1151, 1422 |
| FspBI | CTAG | 4 cut(s) | 213, 1238, 1385, 1586 |
| GlaI | GCGC | 1 cut(s) | 510 |
| GluI | GCNGC | 4 cut(s) | 1002, 1148, 1151, 1422 |
| GsaI | CCCAGC | 2 cut(s) | 241, 1428 |
| GsuI | CTGGAG | 2 cut(s) | 578, 667 |
| HaeIII | GGCC | 5 cut(s) | 786, 876, 1004, 1440, 1730 |
| HgaI | GACGC | 1 cut(s) | 44 |
| HhaI | GCGC | 1 cut(s) | 511 |
| Hin1I | GRCGYC | 1 cut(s) | 55 |
| Hin6I | GCGC | 1 cut(s) | 509 |
| HinP1I | GCGC | 1 cut(s) | 509 |
| HincII | GTYRAC | 1 cut(s) | 1577 |
| HindII | GTYRAC | 1 cut(s) | 1577 |
| HindIII | AAGCTT | 3 cut(s) | 1283, 1503, 1543 |
| HinfI | GANTC | 9 cut(s) | 122, 317, 541, 619, 1040, 1160, 1843, 2056, 2098 |
| HphI | GGTGA | 1 cut(s) | 727 |
| Hpy166II | GTNNAC | 5 cut(s) | 691, 1577, 1693, 1909, 2010 |
| Hpy188III | TCNNGA | 7 cut(s) | 49, 353, 892, 1397, 1493, 1658, 1855 |
| Hpy8I | GTNNAC | 5 cut(s) | 691, 1577, 1693, 1909, 2010 |
| HpyAV | CCTTC | 5 cut(s) | 236, 283, 1519, 1669, 1987 |
| HpyCH4III | ACNGT | 2 cut(s) | 390, 474 |
| HpyCH4IV | ACGT | 1 cut(s) | 909 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 229, 718, 1138, 1147, 1427, 2084 |
| HpySE526I | ACGT | 1 cut(s) | 909 |
| Hsp92I | GRCGYC | 1 cut(s) | 55 |
| HspAI | GCGC | 1 cut(s) | 509 |
| Ksp22I | TGATCA | 1 cut(s) | 913 |
| Kzo9I | GATC | 9 cut(s) | 458, 858, 888, 913, 1100, 1334, 1636, 1857, 1915 |
| LmnI | GCTCC | 5 cut(s) | 686, 931, 1435, 1601, 1996 |
| Lsp1109I | GCAGC | 3 cut(s) | 1134, 1137, 1433 |
| MaeI | CTAG | 4 cut(s) | 213, 1238, 1385, 1586 |
| MaeII | ACGT | 1 cut(s) | 909 |
| MaeIII | GTNAC | 6 cut(s) | 13, 905, 1028, 1226, 1455, 1978 |
| MalI | GATC | 9 cut(s) | 460, 860, 890, 915, 1102, 1336, 1638, 1859, 1917 |
| MboI | GATC | 9 cut(s) | 458, 858, 888, 913, 1100, 1334, 1636, 1857, 1915 |
| MboII | GAAGA | 6 cut(s) | 1037, 1698, 1765, 1776, 1821, 1937 |
| MfeI | CAATTG | 1 cut(s) | 1095 |
| MflI | RGATCY | 6 cut(s) | 858, 888, 1100, 1334, 1636, 1915 |
| MhlI | GDGCHC | 2 cut(s) | 1237, 1432 |
| MlsI | TGGCCA | 1 cut(s) | 876 |
| MluNI | TGGCCA | 1 cut(s) | 876 |
| MlyI | GAGTC | 4 cut(s) | 326, 613, 1049, 2092 |
| MmeI | TCCRAC | 2 cut(s) | 700, 1184 |
| Mox20I | TGGCCA | 1 cut(s) | 876 |
| MroXI | GAANNNNTTC | 2 cut(s) | 126, 1069 |
| MscI | TGGCCA | 1 cut(s) | 876 |
| MslI | CAYNNNNRTG | 1 cut(s) | 954 |
| Msp20I | TGGCCA | 1 cut(s) | 876 |
| MspA1I | CMGCKG | 1 cut(s) | 1424 |
| MspR9I | CCNGG | 1 cut(s) | 485 |
| MunI | CAATTG | 1 cut(s) | 1095 |
| Mva1269I | GAATGC | 1 cut(s) | 1773 |
| MvaI | CCWGG | 1 cut(s) | 485 |
| MvnI | CGCG | 1 cut(s) | 511 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 229, 718, 1138, 1147, 1427, 2084 |
| NcoI | CCATGG | 1 cut(s) | 1434 |
| NdeI | CATATG | 1 cut(s) | 609 |
| NdeII | GATC | 9 cut(s) | 458, 858, 888, 913, 1100, 1334, 1636, 1857, 1915 |
| NheI | GCTAGC | 1 cut(s) | 212 |
| NlaIV | GGNNCC | 2 cut(s) | 247, 1431 |
| NmuCI | GTSAC | 5 cut(s) | 13, 905, 1028, 1455, 1978 |
| NspI | RCATGY | 3 cut(s) | 429, 1605, 2008 |
| PacI | TTAATTAA | 1 cut(s) | 1512 |
| PagI | TCATGA | 1 cut(s) | 1396 |
| PciI | ACATGT | 1 cut(s) | 1601 |
| PctI | GAATGC | 1 cut(s) | 1773 |
| PdmI | GAANNNNTTC | 2 cut(s) | 126, 1069 |
| PfeI | GAWTC | 5 cut(s) | 122, 541, 1160, 1843, 2056 |
| PkrI | GCNGC | 4 cut(s) | 1003, 1149, 1152, 1423 |
| PleI | GAGTC | 4 cut(s) | 325, 613, 1048, 2092 |
| PpsI | GAGTC | 4 cut(s) | 325, 613, 1048, 2092 |
| PscI | ACATGT | 1 cut(s) | 1601 |
| PshBI | ATTAAT | 1 cut(s) | 1371 |
| Psp6I | CCWGG | 1 cut(s) | 483 |
| PspFI | CCCAGC | 2 cut(s) | 237, 1424 |
| PspGI | CCWGG | 1 cut(s) | 483 |
| PspN4I | GGNNCC | 2 cut(s) | 247, 1431 |
| PspPI | GGNCC | 1 cut(s) | 1438 |
| PsuI | RGATCY | 6 cut(s) | 858, 888, 1100, 1334, 1636, 1915 |
| PvuII | CAGCTG | 1 cut(s) | 1424 |
| RsaI | GTAC | 5 cut(s) | 1606, 1849, 1928, 2009, 2027 |
| RsaNI | GTAC | 5 cut(s) | 1605, 1848, 1927, 2008, 2026 |
| RseI | CAYNNNNRTG | 1 cut(s) | 954 |
| SatI | GCNGC | 4 cut(s) | 1002, 1148, 1151, 1422 |
| Sau3AI | GATC | 9 cut(s) | 458, 858, 888, 913, 1100, 1334, 1636, 1857, 1915 |
| Sau96I | GGNCC | 1 cut(s) | 1438 |
| ScaI | AGTACT | 1 cut(s) | 1928 |
| SchI | GAGTC | 4 cut(s) | 326, 613, 1049, 2092 |
| ScrFI | CCNGG | 1 cut(s) | 485 |
| SduI | GDGCHC | 2 cut(s) | 1237, 1432 |
| SfcI | CTRYAG | 1 cut(s) | 470 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 954 |
| SmlI | CTYRAG | 1 cut(s) | 1112 |
| SmoI | CTYRAG | 1 cut(s) | 1112 |
| SsiI | CCGC | 2 cut(s) | 1001, 1269 |
| SspMI | CTAG | 4 cut(s) | 213, 1238, 1385, 1586 |
| StyD4I | CCNGG | 1 cut(s) | 483 |
| StyI | CCWWGG | 1 cut(s) | 1434 |
| TaaI | ACNGT | 2 cut(s) | 390, 474 |
| TaiI | ACGT | 1 cut(s) | 912 |
| TaqI | TCGA | 1 cut(s) | 1622 |
| TatI | WGTACW | 4 cut(s) | 1604, 1926, 2007, 2025 |
| TauI | GCSGC | 1 cut(s) | 1004 |
| TfiI | GAWTC | 5 cut(s) | 122, 541, 1160, 1843, 2056 |
| TscAI | CASTG | 7 cut(s) | 388, 416, 691, 1012, 1798, 1987, 2017 |
| TseFI | GTSAC | 5 cut(s) | 13, 905, 1028, 1455, 1978 |
| TseI | GCWGC | 3 cut(s) | 1147, 1150, 1421 |
| Tsp45I | GTSAC | 5 cut(s) | 13, 905, 1028, 1455, 1978 |
| TspDTI | ATGAA | 8 cut(s) | 180, 189, 321, 596, 1314, 1793, 2006, 2039 |
| TspGWI | ACGGA | 2 cut(s) | 359, 918 |
| TspRI | CASTG | 7 cut(s) | 388, 416, 691, 1012, 1798, 1987, 2017 |
| VspI | ATTAAT | 1 cut(s) | 1371 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 813, 1991 |
| XapI | RAATTY | 6 cut(s) | 140, 186, 1293, 1782, 1897, 2068 |
| XceI | RCATGY | 3 cut(s) | 429, 1605, 2008 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 869 |
| XmnI | GAANNNNTTC | 2 cut(s) | 126, 1069 |
| XspI | CTAG | 4 cut(s) | 213, 1238, 1385, 1586 |
| ZrmI | AGTACT | 1 cut(s) | 1928 |