Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0007437

Physical Location & Seq

Genomic Coordinates Reverse (-)

47311450 .. 47313872

Gene Structure 2423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003334

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1707 bp

ATGATTGAAGATAAATATGGCTCTACAGATGTGCAGCAAGAGAGAGTGAATGGACATGAAAATCAGAAACATATGCAAGAAGTTGCGTTGATTGTTGATAAGCAGAATGTTGAAGTCAAGAAGTATCAAGTGAATGAAGAGCAAGTTGAAGTGATTGAACAAAAGACAGAACATGTGAAGCAAAGTGCAGAACCAATACAGCACATGAAGGTGATTGATTGTCAAAATGGATCTTCAAAGCAACAAAATGAACAGAAAGATGAAGTGAATAGACAGCAAAGTGAAAATCAAATCCAAGTAACTGCAGTGGTTGTTGAAAAGTCTAATATTTCAGAACAGACACGTAATTTGAATGAAGAAGAACAAGTTGAAGTGACTGCACAGAGAGAATATGGGCAGCAAAGTCAAGTAGCTAGTCAAGAAGAGCAACATAACAAGGTGAATGACTGTCAAAATAGCAAAGTGATTGACAGTCAAAATGGATCTCCGGAGCAACAAAATAAACAGCAAGAATATGTGAATGAGGATCAATTGCAAGAAATCATTTCAAGGTGTCAAAAGACTAAAAGAGATATGCAGTTACATGGAGAAGCAGTTGAAGCAATTCGGTCTGGACCAGAGGCACAGCAAAGTGATATGATTTCAGAACAAAATAGACCGCAAGACCAAATTGAATTAACAAGTATGCAGGAGTTATTGTCTAAGAAGCAAGAGAAAGATGTGGCTACTGAAGTCAATTCAAATATTTCCATTGCAAGTCAGAAATTCTCCCAACATGTTTCGTCAAACTTGTCTGAGTTTAATGATGTGGTTGCTGCCAGTGAGCTTATATTACAAATGTGTGATGATCGCAAGTCTTTTCCAATTAAGAGAGACAAGAAGAACTCACAAAGGTCTTATCTTGTTCCAATTGGATCTCATAATCTGAAGTCTGGGTTGAATATGCAGATTTTCCCTGAGCTGCTGCAGAAAGATTCTGTCCTCAAATTAGAAAGTTGGCTAGAAACTGCTCATGACATTTTAGATGACATGGAAAGAGCTGAGGCTCCCATGGGCTATAGTACCTGTATGTCACTCCTGACAGCCTATTACAAAAGAAAAATGTTTCCAGAAGCAAAGGCATTGCTTAAACAGATGAGAAAGGCTGGTTTGCTTGTAAATTTATCTGATGAGATGGTTGCCTCGACATGTCTATCAGTAGTAGATTCAACTGCCCTTTGTACAAGTGCATCAATGTCCACCAGTAAATCTGATCTGGCAAATGCTTTGGTTCAGGAAATGAGAGATGAGAAAGAGGAAATTCCTTGTAGGGTTTATCAGTTCAATTCTTCCATCAACTTTTTTTGCAAGGCCAAAATGATTGATGATGCTCTAAAGACATACAAAAGAATGCAGGAGTTGAAAATTCACCCCACTGAGGAAACTTTTACCTATATGATAAATGTGTATTCTTCTCTAGGAATGTTCCGTAATATCACATTCTTCTGGGGGGACATGAAGAGGAATATGGATAATGGAAATTTGGTGGAGCACAGTATGTTTGCTGACAAGTGGATGTACAGAAGTGAGTTTTTAAAGCTTCATAAGAATCTTTATAGGAACTTGAAGGCATCAGAAGCCAGAACGGATGCTCAGAGGAAAAGACTTGAATATGTTCAGGCATTTAGGAAATGGGTGGGCATGATTGAATTTCCAAGAGAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

569

Amino Acids

65.64

Weight (kDa)

5.48

Isoelectric Point (pI)

55.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	441 - 483	2.6e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17616
fragaria_vesca	FvH4_5g20640 FvH4_5g20640 FvH4_5g20640
malus_domestica	MD14G1082200.v1.1 MD14G1090100.v1.1
prunus_persica	Prupe.2G056400_v2.0.a1 Prupe.7G036400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0206021 RchiOBHm_Chr7g0206121 RchiOBHm_Chr7g0206131
rosa_laevigata	RLG00000003334 RLG00000003337
rosa_multiflora	Rmu_sc0000076.1_g000009 Rmu_sc0000076.1_g000017 Rmu_sc0004084.1_g000022
rosa_roxburghii	Rroxscaffold_3G00251830
rosa_rugosa	Rorug07G0094500 Rorug07G0094500
rosa_samantha	Rh7AG226700 Rh7BG222900 Rh7CG240700 Rh7DG232700
rosa_wichuraiana	Rw0G012920 Rw7G019570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	487
AciI	CCGC	1 cut(s)	659
AclWI	GGATC	4 cut(s)	238, 490, 534, 922
AcsI	RAATTY	6 cut(s)	764, 1159, 1299, 1404, 1519, 1688
AcuI	CTGAAG	2 cut(s)	750, 947
AfaI	GTAC	3 cut(s)	1063, 1222, 1559
AfiI	CCNNNNNNNGG	1 cut(s)	1417
AflIII	ACRYGT	4 cut(s)	172, 341, 775, 1187
AluBI	AGCT	6 cut(s)	413, 826, 961, 1040, 1579, 1703
AluI	AGCT	6 cut(s)	413, 826, 961, 1040, 1579, 1703
Alw21I	GWGCWC	1 cut(s)	1533
Alw26I	GTCTC	1 cut(s)	867
AlwI	GGATC	4 cut(s)	238, 490, 534, 922
Aor13HI	TCCGGA	1 cut(s)	487
AoxI	GGCC	1 cut(s)	1350
ApeKI	GCWGC	5 cut(s)	34, 397, 815, 961, 964
ApoI	RAATTY	6 cut(s)	764, 1159, 1299, 1404, 1519, 1688
ArsI	GACNNNNNNTTYG	2 cut(s)	331, 363
Asp700I	GAANNNNTTC	2 cut(s)	603, 1653
AspS9I	GGNCC	1 cut(s)	614
AsuHPI	GGTGA	3 cut(s)	223, 451, 1400
AvaII	GGWCC	1 cut(s)	614
Bbv12I	GWGCWC	1 cut(s)	1533
BbvCI	CCTCAGC	1 cut(s)	1041
BbvI	GCAGC	5 cut(s)	46, 409, 802, 948, 951
BccI	CCATC	2 cut(s)	1168, 1340
BcoDI	GTCTC	1 cut(s)	867
BfaI	CTAG	3 cut(s)	414, 1001, 1457
BfmI	CTRYAG	4 cut(s)	24, 303, 965, 1057
BisI	GCNGC	5 cut(s)	35, 398, 816, 962, 965
BlsI	GCNGC	5 cut(s)	36, 399, 817, 963, 966
Bme18I	GGWCC	1 cut(s)	614
BmgT120I	GGNCC	1 cut(s)	614
BmiI	GGNNCC	1 cut(s)	1047
BmsI	GCATC	4 cut(s)	1238, 1357, 1618, 1619
Bpu10I	CCTNAGC	2 cut(s)	957, 1041
BsaAI	YACGTR	1 cut(s)	344
BsaJI	CCNNGG	1 cut(s)	1050
BsaWI	WCCGGW	1 cut(s)	487
BsaXI	ACNNNNNCTCC	4 cut(s)	579, 609, 683, 713
Bsc4I	CCNNNNNNNGG	1 cut(s)	1417
Bse1I	ACTGG	2 cut(s)	819, 1242
Bse3DI	GCAATG	2 cut(s)	750, 1121
BseAI	TCCGGA	1 cut(s)	487
BseDI	CCNNGG	1 cut(s)	1050
BseGI	GGATG	2 cut(s)	1560, 1633
BseLI	CCNNNNNNNGG	1 cut(s)	1417
BseMI	GCAATG	2 cut(s)	750, 1121
BseMII	CTCAG	5 cut(s)	786, 948, 1032, 1407, 1646
BseNI	ACTGG	2 cut(s)	819, 1242
BseXI	GCAGC	5 cut(s)	46, 409, 802, 948, 951
BsgI	GTGCAG	3 cut(s)	53, 207, 363
BshFI	GGCC	1 cut(s)	1352
BsiHKAI	GWGCWC	1 cut(s)	1533
BsiSI	CCGG	1 cut(s)	488
BslFI	GGGAC	1 cut(s)	1505
BslI	CCNNNNNNNGG	1 cut(s)	1417
BsmAI	GTCTC	1 cut(s)	867
BsmFI	GGGAC	1 cut(s)	1505
BsmI	GAATGC	1 cut(s)	1395
BsnI	GGCC	1 cut(s)	1352
Bsp1286I	GDGCHC	1 cut(s)	1533
Bsp13I	TCCGGA	1 cut(s)	487
Bsp1407I	TGTACA	2 cut(s)	1220, 1557
Bsp143I	GATC	6 cut(s)	230, 482, 526, 847, 914, 1252
Bsp19I	CCATGG	1 cut(s)	1050
BspACI	CCGC	1 cut(s)	659
BspANI	GGCC	1 cut(s)	1352
BspCNI	CTCAG	5 cut(s)	787, 949, 1033, 1408, 1645
BspEI	TCCGGA	1 cut(s)	487
BspHI	TCATGA	1 cut(s)	1012
BspLI	GGNNCC	1 cut(s)	1047
BspMAI	CTGCAG	2 cut(s)	307, 969
BspPI	GGATC	4 cut(s)	238, 490, 534, 922
BspQI	GCTCTTC	2 cut(s)	132, 417
BsrDI	GCAATG	2 cut(s)	750, 1121
BsrGI	TGTACA	2 cut(s)	1220, 1557
BsrI	ACTGG	2 cut(s)	819, 1242
BssECI	CCNNGG	1 cut(s)	1050
BssMI	GATC	6 cut(s)	230, 482, 526, 847, 914, 1252
BssT1I	CCWWGG	1 cut(s)	1050
Bst4CI	ACNGT	3 cut(s)	449, 473, 1535
Bst6I	CTCTTC	3 cut(s)	132, 417, 1493
BstAUI	TGTACA	2 cut(s)	1220, 1557
BstBAI	YACGTR	1 cut(s)	344
BstDEI	CTNAG	6 cut(s)	702, 795, 957, 1041, 1416, 1632
BstDSI	CCRYGG	1 cut(s)	1050
BstF5I	GGATG	2 cut(s)	1560, 1633
BstKTI	GATC	6 cut(s)	233, 485, 529, 850, 917, 1255
BstMAI	GTCTC	1 cut(s)	867
BstMBI	GATC	6 cut(s)	230, 482, 526, 847, 914, 1252
BstMWI	GCNNNNNNNGC	2 cut(s)	599, 1616
BstNSI	RCATGY	3 cut(s)	176, 779, 1191
BstSFI	CTRYAG	4 cut(s)	24, 303, 965, 1057
BstV1I	GCAGC	5 cut(s)	46, 409, 802, 948, 951
BstX2I	RGATCY	3 cut(s)	230, 482, 914
BstYI	RGATCY	3 cut(s)	230, 482, 914
BsuRI	GGCC	1 cut(s)	1352
BtgI	CCRYGG	1 cut(s)	1050
BtsCI	GGATG	2 cut(s)	1560, 1633
BtsI	GCAGTG	1 cut(s)	312
BtsIMutI	CAGTG	3 cut(s)	312, 826, 1413
CciI	TCATGA	1 cut(s)	1012
Cfr13I	GGNCC	1 cut(s)	614
Csp6I	GTAC	3 cut(s)	1062, 1221, 1558
CviQI	GTAC	3 cut(s)	1062, 1221, 1558
DdeI	CTNAG	6 cut(s)	702, 795, 957, 1041, 1416, 1632
DpnI	GATC	6 cut(s)	232, 484, 528, 849, 916, 1254
DpnII	GATC	6 cut(s)	230, 482, 526, 847, 914, 1252
DraI	TTTAAA	1 cut(s)	1575
Eam1104I	CTCTTC	3 cut(s)	132, 417, 1493
EarI	CTCTTC	3 cut(s)	132, 417, 1493
Eco130I	CCWWGG	1 cut(s)	1050
Eco47I	GGWCC	1 cut(s)	614
Eco57I	CTGAAG	2 cut(s)	750, 947
EcoT14I	CCWWGG	1 cut(s)	1050
ErhI	CCWWGG	1 cut(s)	1050
FalI	AAGNNNNNCTT	1 cut(s)	1687
FaqI	GGGAC	1 cut(s)	1505
FauNDI	CATATG	1 cut(s)	72
Fnu4HI	GCNGC	5 cut(s)	35, 398, 816, 962, 965
FokI	GGATG	2 cut(s)	1567, 1640
Fsp4HI	GCNGC	5 cut(s)	35, 398, 816, 962, 965
FspBI	CTAG	3 cut(s)	414, 1001, 1457
GluI	GCNGC	5 cut(s)	35, 398, 816, 962, 965
HaeIII	GGCC	1 cut(s)	1352
HapII	CCGG	1 cut(s)	488
HindIII	AAGCTT	2 cut(s)	1577, 1701
HinfI	GANTC	3 cut(s)	974, 1205, 1588
HpaII	CCGG	1 cut(s)	488
HphI	GGTGA	3 cut(s)	223, 451, 1400
Hpy166II	GTNNAC	1 cut(s)	1239
Hpy188III	TCNNGA	8 cut(s)	118, 419, 488, 612, 1013, 1078, 1109, 1274
Hpy8I	GTNNAC	1 cut(s)	1239
HpyAV	CCTTC	2 cut(s)	202, 1600
HpyCH4III	ACNGT	3 cut(s)	449, 473, 1535
HpyCH4IV	ACGT	1 cut(s)	343
HpyF10VI	GCNNNNNNNGC	2 cut(s)	599, 1616
HpyF3I	CTNAG	6 cut(s)	702, 795, 957, 1041, 1416, 1632
HpySE526I	ACGT	1 cut(s)	343
Kpn2I	TCCGGA	1 cut(s)	487
Kzo9I	GATC	6 cut(s)	230, 482, 526, 847, 914, 1252
LguI	GCTCTTC	2 cut(s)	132, 417
LmnI	GCTCC	3 cut(s)	490, 1051, 1528
Lsp1109I	GCAGC	5 cut(s)	46, 409, 802, 948, 951
LweI	GCATC	4 cut(s)	1238, 1357, 1618, 1619
MaeI	CTAG	3 cut(s)	414, 1001, 1457
MaeII	ACGT	1 cut(s)	343
MaeIII	GTNAC	4 cut(s)	298, 373, 579, 1071
MalI	GATC	6 cut(s)	232, 484, 528, 849, 916, 1254
MboI	GATC	6 cut(s)	230, 482, 526, 847, 914, 1252
MfeI	CAATTG	2 cut(s)	530, 909
MflI	RGATCY	3 cut(s)	230, 482, 914
MhlI	GDGCHC	1 cut(s)	1533
MnlI	CCTC	9 cut(s)	517, 613, 992, 1036, 1192, 1288, 1411, 1494, 1629
MroI	TCCGGA	1 cut(s)	487
MroXI	GAANNNNTTC	2 cut(s)	603, 1653
MseI	TTAA	6 cut(s)	677, 801, 867, 1128, 1574, 1705
MslI	CAYNNNNRTG	1 cut(s)	209
MspI	CCGG	1 cut(s)	488
MunI	CAATTG	2 cut(s)	530, 909
Mva1269I	GAATGC	1 cut(s)	1395
MwoI	GCNNNNNNNGC	2 cut(s)	599, 1616
NcoI	CCATGG	1 cut(s)	1050
NdeI	CATATG	1 cut(s)	72
NdeII	GATC	6 cut(s)	230, 482, 526, 847, 914, 1252
NlaIV	GGNNCC	1 cut(s)	1047
NmuCI	GTSAC	2 cut(s)	373, 1071
NspI	RCATGY	3 cut(s)	176, 779, 1191
PagI	TCATGA	1 cut(s)	1012
PciI	ACATGT	3 cut(s)	172, 775, 1187
PciSI	GCTCTTC	2 cut(s)	132, 417
PctI	GAATGC	1 cut(s)	1395
PdmI	GAANNNNTTC	2 cut(s)	603, 1653
PfeI	GAWTC	3 cut(s)	974, 1205, 1588
PkrI	GCNGC	5 cut(s)	36, 399, 817, 963, 966
Ppu21I	YACGTR	1 cut(s)	344
PscI	ACATGT	3 cut(s)	172, 775, 1187
PspN4I	GGNNCC	1 cut(s)	1047
PspPI	GGNCC	1 cut(s)	614
PstI	CTGCAG	2 cut(s)	307, 969
PsuI	RGATCY	3 cut(s)	230, 482, 914
RsaI	GTAC	3 cut(s)	1063, 1222, 1559
RsaNI	GTAC	3 cut(s)	1062, 1221, 1558
RseI	CAYNNNNRTG	1 cut(s)	209
SapI	GCTCTTC	2 cut(s)	132, 417
SaqAI	TTAA	6 cut(s)	677, 801, 867, 1128, 1574, 1705
SatI	GCNGC	5 cut(s)	35, 398, 816, 962, 965
Sau3AI	GATC	6 cut(s)	230, 482, 526, 847, 914, 1252
Sau96I	GGNCC	1 cut(s)	614
SduI	GDGCHC	1 cut(s)	1533
SfaNI	GCATC	4 cut(s)	1238, 1357, 1618, 1619
SfcI	CTRYAG	4 cut(s)	24, 303, 965, 1057
SinI	GGWCC	1 cut(s)	614
SmiMI	CAYNNNNRTG	1 cut(s)	209
SsiI	CCGC	1 cut(s)	659
SspI	AATATT	2 cut(s)	328, 745
SspMI	CTAG	3 cut(s)	414, 1001, 1457
StyI	CCWWGG	1 cut(s)	1050
TaaI	ACNGT	3 cut(s)	449, 473, 1535
TaiI	ACGT	1 cut(s)	346
TaqI	TCGA	1 cut(s)	1184
TaqII	GACCGA	1 cut(s)	597
TatI	WGTACW	2 cut(s)	1220, 1557
TfiI	GAWTC	3 cut(s)	974, 1205, 1588
Tru1I	TTAA	6 cut(s)	677, 801, 867, 1128, 1574, 1705
Tru9I	TTAA	6 cut(s)	677, 801, 867, 1128, 1574, 1705
TscAI	CASTG	3 cut(s)	312, 826, 1420
TseFI	GTSAC	2 cut(s)	373, 1071
TseI	GCWGC	5 cut(s)	34, 397, 815, 961, 964
Tsp45I	GTSAC	2 cut(s)	373, 1071
TspDTI	ATGAA	8 cut(s)	72, 150, 221, 264, 276, 369, 1511, 1571
TspGWI	ACGGA	2 cut(s)	1457, 1640
TspRI	CASTG	3 cut(s)	312, 826, 1420
VpaK11BI	GGWCC	1 cut(s)	614
XapI	RAATTY	6 cut(s)	764, 1159, 1299, 1404, 1519, 1688
XceI	RCATGY	3 cut(s)	176, 779, 1191
XmnI	GAANNNNTTC	2 cut(s)	603, 1653
XspI	CTAG	3 cut(s)	414, 1001, 1457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.