Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0007437

Physical Location & Seq

Genomic Coordinates Reverse (-)

45826251 .. 45830227

Gene Structure 3977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00251830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1695 bp

ATGGCACTAATATTGACTAAGGAAATTCTTGGGCGTAATTGCATCACTAGAAGGTGTTCATTGGGGTTCTACGTGGCTTCAGTTATTCAGAGGGCAACCCTATTATCAAATTATGATACAGAATTAGTTGCGAGTGGAAGATCTATAAGTTCTACGATATCAAGTATAAGCTATGAACAGCATCGGAATTTGTCTTCCCAAAACTTTTGTACTGCTGTTCATCCTGAAAGGCTGTGTTGGGAAGGTTCTTCTCGTGCAACTATGTTGAAAAGGCTCGAAATAGCCTTGAAGGAACATCAAGTGAATGAAGTATGGGAATCATTTATTGATTTTAAAAGGTTGCATGGCTTTCCCGAGGGTTTTCTTATTCATAAGCTAATTACTGAACTGTGCTATTCATCTGACCCTTACTGGCTACAAAAAGCATGTGATCTAGTCCTAGTAAATTTGAGAGAGAGATCAGACTTACTTCAGTCTGATATCTTGACAAAGCTCTCCCTCTCCTTAGCACGCTGTCAAATGCCTAAGCCTGCTACGATGATTCTGCGATTAATGCTGGAGAAAAGGAATTTACCCCCAATGGATGTACTGTGCTTGGTTGCTCTGCATATGTTCAAATTATCTCTGAAAGGTCAGCAGATCATGGAATTGATGCCTGCAACAGGAGTGGTTGCTGATGCACACTCTATTGTCATTATTGCCCAAATTCATGAATTGAATGGTCAGAGGGAGGAGATAAAGAATTATAAATGTTATATGGATCAGGTTTCAGCTCCATTTGTTCAACATTATCGGCAATTTTATGATAGTTTGTTGAGTTTGCATTTCAAGTTTAATGATGTGGTTGCTGCCAGTGAGCTTATATTACAAATGTGTGATGATCGCAGGTCTTTTCCAATTCAGAGAGACAACAAGAACGCACAAAGGTCTTATCTTGTTCCAATTGGATCTCATAATCTGAAGTCTGGGTTGAATATGCAGATTTTCCCTGAGCTGCTGCAGAAAGATTCTGTCCTCAAATTAGAAGGATCCAGATTGGGCAATGATGTGATTCACGCTTGCATTCATTTAGCTTGGCTAGAAACTGCTCATGACATTTTAGATGACATGGAAACAGCTGAGGCTCCCATGGGCTATAGTACCTGTATGTCACTCCTGATAGCCTATTGCAGAAGAAAAATGTTTCCAGAAGCAAAGGCATTGCTTAAACAGATGAGAAAGGCTGGTTTGCTTGTAAATTTATCTGATGAGATGGTTACCTCGACATGTCTATCAGTAGTAGACTCAACTGCCCTTTGTACAAGTGCATCAATTTCCACCAGTAAATCTGATCTGGCAAATGCTTTGGCCAAAATGATTGATGATGCTCTAAAGACATACAAAAGAATGCAGGAGTTGAAAATTCACCCCACTGAGAGGAATATGGATAATGGAAATTTGGTGGTAAGCAGGGATCTGTATGAGTACCTGCTACTGAACTTCCTCTGTGGTGGTTACTTTGAGAGAGTCATGGAGGTCATTAACTATATGAAGGAGCACAGTATGTTTGCTGACAAGTGGATGTACAGAAGTGAGTTTTTAAAGCTTCATAAGAATCTTTATAGGAACTTGAAGGCATCAGAAGCCAGAACGGATGCTCAGAGGAAAAGACTTGAATATGTTCAGGCATTTAGGAAATGGGTGGGCATTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

564

Amino Acids

64.72

Weight (kDa)

8.46

Isoelectric Point (pI)

48.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_At1g68980	PF25245	85 - 202	2.9e-09	At1g68980, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17616
fragaria_vesca	FvH4_5g20640 FvH4_5g20640 FvH4_5g20640
malus_domestica	MD14G1082200.v1.1 MD14G1090100.v1.1
prunus_persica	Prupe.2G056400_v2.0.a1 Prupe.7G036400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0206021 RchiOBHm_Chr7g0206121 RchiOBHm_Chr7g0206131
rosa_laevigata	RLG00000003334 RLG00000003337
rosa_multiflora	Rmu_sc0000076.1_g000009 Rmu_sc0000076.1_g000017 Rmu_sc0004084.1_g000022
rosa_roxburghii	Rroxscaffold_3G00251830
rosa_rugosa	Rorug07G0094500 Rorug07G0094500
rosa_samantha	Rh7AG226700 Rh7BG222900 Rh7CG240700 Rh7DG232700
rosa_wichuraiana	Rw0G012920 Rw7G019570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	747
Acc36I	ACCTGC	2 cut(s)	876, 1476
AccI	GTMKAC	1 cut(s)	1281
AclWI	GGATC	5 cut(s)	768, 955, 1023, 1036, 1461
AcoI	YGGCCR	1 cut(s)	1347
AcsI	RAATTY	8 cut(s)	24, 187, 445, 568, 705, 1237, 1401, 1435
AcuI	CTGAAG	3 cut(s)	63, 455, 980
AfaI	GTAC	6 cut(s)	211, 588, 1141, 1300, 1466, 1565
AfiI	CCNNNNNNNGG	2 cut(s)	662, 1416
AflIII	ACRYGT	1 cut(s)	1265
AluBI	AGCT	9 cut(s)	171, 376, 493, 773, 859, 994, 1073, 1118, 1585
AluI	AGCT	9 cut(s)	171, 376, 493, 773, 859, 994, 1073, 1118, 1585
Alw21I	GWGCWC	1 cut(s)	1539
Alw26I	GTCTC	1 cut(s)	900
AlwI	GGATC	5 cut(s)	768, 955, 1023, 1036, 1461
Ama87I	CYCGRG	1 cut(s)	353
AoxI	GGCC	1 cut(s)	1347
ApeKI	GCWGC	3 cut(s)	848, 994, 997
ApoI	RAATTY	8 cut(s)	24, 187, 445, 568, 705, 1237, 1401, 1435
AseI	ATTAAT	1 cut(s)	551
Asp700I	GAANNNNTTC	2 cut(s)	55, 1659
AsuHPI	GGTGA	1 cut(s)	1397
AvaI	CYCGRG	1 cut(s)	353
BalI	TGGCCA	1 cut(s)	1349
BamHI	GGATCC	1 cut(s)	1028
BauI	CACGAG	1 cut(s)	252
BbsI	GAAGAC	1 cut(s)	186
Bbv12I	GWGCWC	1 cut(s)	1539
BbvCI	CCTCAGC	1 cut(s)	1119
BbvI	GCAGC	3 cut(s)	835, 981, 984
BccI	CCATC	1 cut(s)	1246
BcgI	CGANNNNNNTGC	2 cut(s)	526, 560
BcoDI	GTCTC	1 cut(s)	900
BfaI	CTAG	4 cut(s)	48, 434, 440, 1079
BfmI	CTRYAG	2 cut(s)	998, 1135
BfuAI	ACCTGC	2 cut(s)	876, 1476
BglII	AGATCT	1 cut(s)	140
BisI	GCNGC	3 cut(s)	849, 995, 998
BlsI	GCNGC	3 cut(s)	850, 996, 999
BmeT110I	CYCGRG	1 cut(s)	353
BmiI	GGNNCC	2 cut(s)	1030, 1125
BmsI	GCATC	8 cut(s)	51, 190, 642, 667, 1316, 1354, 1624, 1625
BpiI	GAAGAC	1 cut(s)	186
BpmI	CTGGAG	1 cut(s)	578
Bpu10I	CCTNAGC	4 cut(s)	505, 525, 990, 1119
BsaAI	YACGTR	1 cut(s)	73
BsaJI	CCNNGG	2 cut(s)	354, 1128
Bsc4I	CCNNNNNNNGG	2 cut(s)	662, 1416
Bse1I	ACTGG	3 cut(s)	416, 852, 1320
Bse3DI	GCAATG	2 cut(s)	1048, 1199
BseDI	CCNNGG	2 cut(s)	354, 1128
BseGI	GGATG	4 cut(s)	220, 589, 1566, 1639
BseLI	CCNNNNNNNGG	2 cut(s)	662, 1416
BseMI	GCAATG	2 cut(s)	1048, 1199
BseMII	CTCAG	4 cut(s)	981, 1110, 1404, 1652
BseNI	ACTGG	3 cut(s)	416, 852, 1320
BseRI	GAGGAG	1 cut(s)	746
BseXI	GCAGC	3 cut(s)	835, 981, 984
BshFI	GGCC	1 cut(s)	1349
BsiHKAI	GWGCWC	1 cut(s)	1539
BsiHKCI	CYCGRG	1 cut(s)	353
BslI	CCNNNNNNNGG	2 cut(s)	662, 1416
BsmAI	GTCTC	1 cut(s)	900
BsmI	GAATGC	2 cut(s)	1062, 1392
BsnI	GGCC	1 cut(s)	1349
BsoBI	CYCGRG	1 cut(s)	353
Bsp1286I	GDGCHC	1 cut(s)	1539
Bsp1407I	TGTACA	2 cut(s)	1298, 1563
Bsp19I	CCATGG	1 cut(s)	1128
BspANI	GGCC	1 cut(s)	1349
BspCNI	CTCAG	4 cut(s)	982, 1111, 1405, 1651
BspHI	TCATGA	2 cut(s)	709, 1090
BspLI	GGNNCC	2 cut(s)	1030, 1125
BspMAI	CTGCAG	1 cut(s)	1002
BspMI	ACCTGC	2 cut(s)	876, 1476
BspPI	GGATC	5 cut(s)	768, 955, 1023, 1036, 1461
BsrDI	GCAATG	2 cut(s)	1048, 1199
BsrGI	TGTACA	2 cut(s)	1298, 1563
BsrI	ACTGG	3 cut(s)	416, 852, 1320
BssECI	CCNNGG	2 cut(s)	354, 1128
BssSI	CACGAG	1 cut(s)	252
BssT1I	CCWWGG	1 cut(s)	1128
Bst2BI	CACGAG	1 cut(s)	252
Bst4CI	ACNGT	3 cut(s)	390, 591, 1541
BstAUI	TGTACA	2 cut(s)	1298, 1563
BstBAI	YACGTR	1 cut(s)	73
BstC8I	GCNNGC	4 cut(s)	511, 531, 657, 1060
BstDEI	CTNAG	7 cut(s)	18, 505, 525, 990, 1119, 1413, 1638
BstDSI	CCRYGG	1 cut(s)	1128
BstEII	GGTNACC	1 cut(s)	1255
BstENI	CCTNNNNNAGG	1 cut(s)	660
BstF5I	GGATG	4 cut(s)	220, 589, 1566, 1639
BstMAI	GTCTC	1 cut(s)	900
BstMWI	GCNNNNNNNGC	2 cut(s)	553, 1622
BstNSI	RCATGY	2 cut(s)	429, 1269
BstPI	GGTNACC	1 cut(s)	1255
BstSFI	CTRYAG	2 cut(s)	998, 1135
BstV1I	GCAGC	3 cut(s)	835, 981, 984
BstV2I	GAAGAC	1 cut(s)	186
BstX2I	RGATCY	4 cut(s)	140, 947, 1028, 1453
BstYI	RGATCY	4 cut(s)	140, 947, 1028, 1453
BsuRI	GGCC	1 cut(s)	1349
BtgI	CCRYGG	1 cut(s)	1128
BtsCI	GGATG	4 cut(s)	220, 589, 1566, 1639
BtsIMutI	CAGTG	2 cut(s)	859, 1410
BveI	ACCTGC	2 cut(s)	876, 1476
Cac8I	GCNNGC	4 cut(s)	511, 531, 657, 1060
CciI	TCATGA	2 cut(s)	709, 1090
Csp6I	GTAC	6 cut(s)	210, 587, 1140, 1299, 1465, 1564
CspCI	CAANNNNNGTGG	2 cut(s)	648, 683
CviAII	CATG	9 cut(s)	344, 426, 643, 710, 1091, 1108, 1129, 1266, 1510
CviQI	GTAC	6 cut(s)	210, 587, 1140, 1299, 1465, 1564
DdeI	CTNAG	7 cut(s)	18, 505, 525, 990, 1119, 1413, 1638
DraI	TTTAAA	2 cut(s)	334, 1581
EaeI	YGGCCR	1 cut(s)	1347
Eco130I	CCWWGG	1 cut(s)	1128
Eco32I	GATATC	2 cut(s)	159, 481
Eco57I	CTGAAG	3 cut(s)	63, 455, 980
Eco88I	CYCGRG	1 cut(s)	353
Eco91I	GGTNACC	1 cut(s)	1255
EcoNI	CCTNNNNNAGG	1 cut(s)	660
EcoO65I	GGTNACC	1 cut(s)	1255
EcoRV	GATATC	2 cut(s)	159, 481
EcoT14I	CCWWGG	1 cut(s)	1128
ErhI	CCWWGG	1 cut(s)	1128
FaeI	CATG	9 cut(s)	347, 429, 646, 713, 1094, 1111, 1132, 1269, 1513
FatI	CATG	9 cut(s)	343, 425, 642, 709, 1090, 1107, 1128, 1265, 1509
FauNDI	CATATG	1 cut(s)	609
FblI	GTMKAC	1 cut(s)	1281
Fnu4HI	GCNGC	3 cut(s)	849, 995, 998
FokI	GGATG	4 cut(s)	207, 596, 1573, 1646
Fsp4HI	GCNGC	3 cut(s)	849, 995, 998
FspBI	CTAG	4 cut(s)	48, 434, 440, 1079
GluI	GCNGC	3 cut(s)	849, 995, 998
GsuI	CTGGAG	1 cut(s)	578
HaeIII	GGCC	1 cut(s)	1349
Hin1II	CATG	9 cut(s)	347, 429, 646, 713, 1094, 1111, 1132, 1269, 1513
HindIII	AAGCTT	1 cut(s)	1583
HinfI	GANTC	7 cut(s)	317, 541, 1007, 1051, 1283, 1506, 1594
HphI	GGTGA	1 cut(s)	1397
Hpy166II	GTNNAC	1 cut(s)	1282
Hpy188III	TCNNGA	8 cut(s)	224, 353, 484, 710, 1032, 1091, 1156, 1187
Hpy8I	GTNNAC	1 cut(s)	1282
HpyAV	CCTTC	6 cut(s)	45, 236, 283, 1019, 1525, 1606
HpyCH4III	ACNGT	3 cut(s)	390, 591, 1541
HpyCH4IV	ACGT	1 cut(s)	72
HpyF10VI	GCNNNNNNNGC	2 cut(s)	553, 1622
HpyF3I	CTNAG	7 cut(s)	18, 505, 525, 990, 1119, 1413, 1638
HpySE526I	ACGT	1 cut(s)	72
Hsp92II	CATG	9 cut(s)	347, 429, 646, 713, 1094, 1111, 1132, 1269, 1513
LmnI	GCTCC	3 cut(s)	778, 1129, 1534
Lsp1109I	GCAGC	3 cut(s)	835, 981, 984
LweI	GCATC	8 cut(s)	51, 190, 642, 667, 1316, 1354, 1624, 1625
MaeI	CTAG	4 cut(s)	48, 434, 440, 1079
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	3 cut(s)	1149, 1255, 1493
MboII	GAAGA	4 cut(s)	150, 186, 240, 1185
MfeI	CAATTG	1 cut(s)	942
MflI	RGATCY	4 cut(s)	140, 947, 1028, 1453
MhlI	GDGCHC	1 cut(s)	1539
MlsI	TGGCCA	1 cut(s)	1349
MluNI	TGGCCA	1 cut(s)	1349
MlyI	GAGTC	2 cut(s)	1277, 1515
Mox20I	TGGCCA	1 cut(s)	1349
MroXI	GAANNNNTTC	2 cut(s)	55, 1659
MscI	TGGCCA	1 cut(s)	1349
MseI	TTAA	6 cut(s)	333, 551, 834, 1206, 1521, 1580
Msp20I	TGGCCA	1 cut(s)	1349
MspA1I	CMGCKG	1 cut(s)	1118
MunI	CAATTG	1 cut(s)	942
Mva1269I	GAATGC	2 cut(s)	1062, 1392
MwoI	GCNNNNNNNGC	2 cut(s)	553, 1622
NcoI	CCATGG	1 cut(s)	1128
NdeI	CATATG	1 cut(s)	609
NlaIII	CATG	9 cut(s)	347, 429, 646, 713, 1094, 1111, 1132, 1269, 1513
NlaIV	GGNNCC	2 cut(s)	1030, 1125
NmuCI	GTSAC	1 cut(s)	1149
NspI	RCATGY	2 cut(s)	429, 1269
PagI	TCATGA	2 cut(s)	709, 1090
PciI	ACATGT	1 cut(s)	1265
PctI	GAATGC	2 cut(s)	1062, 1392
PdmI	GAANNNNTTC	2 cut(s)	55, 1659
PfeI	GAWTC	5 cut(s)	317, 541, 1007, 1051, 1594
PkrI	GCNGC	3 cut(s)	850, 996, 999
PleI	GAGTC	2 cut(s)	1277, 1514
PpsI	GAGTC	2 cut(s)	1277, 1514
Ppu21I	YACGTR	1 cut(s)	73
PscI	ACATGT	1 cut(s)	1265
PshBI	ATTAAT	1 cut(s)	551
PsiI	TTATAA	1 cut(s)	747
PspEI	GGTNACC	1 cut(s)	1255
PspN4I	GGNNCC	2 cut(s)	1030, 1125
PstI	CTGCAG	1 cut(s)	1002
PsuI	RGATCY	4 cut(s)	140, 947, 1028, 1453
PvuII	CAGCTG	1 cut(s)	1118
RsaI	GTAC	6 cut(s)	211, 588, 1141, 1300, 1466, 1565
RsaNI	GTAC	6 cut(s)	210, 587, 1140, 1299, 1465, 1564
SaqAI	TTAA	6 cut(s)	333, 551, 834, 1206, 1521, 1580
SatI	GCNGC	3 cut(s)	849, 995, 998
SchI	GAGTC	2 cut(s)	1277, 1515
SduI	GDGCHC	1 cut(s)	1539
SfaNI	GCATC	8 cut(s)	51, 190, 642, 667, 1316, 1354, 1624, 1625
SfcI	CTRYAG	2 cut(s)	998, 1135
SspI	AATATT	1 cut(s)	12
SspMI	CTAG	4 cut(s)	48, 434, 440, 1079
StyI	CCWWGG	1 cut(s)	1128
TaaI	ACNGT	3 cut(s)	390, 591, 1541
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	2 cut(s)	276, 1262
TatI	WGTACW	4 cut(s)	209, 586, 1298, 1563
TfiI	GAWTC	5 cut(s)	317, 541, 1007, 1051, 1594
Tru1I	TTAA	6 cut(s)	333, 551, 834, 1206, 1521, 1580
Tru9I	TTAA	6 cut(s)	333, 551, 834, 1206, 1521, 1580
TscAI	CASTG	2 cut(s)	859, 1417
TseFI	GTSAC	1 cut(s)	1149
TseI	GCWGC	3 cut(s)	848, 994, 997
Tsp45I	GTSAC	1 cut(s)	1149
TspGWI	ACGGA	1 cut(s)	1646
TspRI	CASTG	2 cut(s)	859, 1417
VspI	ATTAAT	1 cut(s)	551
XagI	CCTNNNNNAGG	1 cut(s)	660
XapI	RAATTY	8 cut(s)	24, 187, 445, 568, 705, 1237, 1401, 1435
XceI	RCATGY	2 cut(s)	429, 1269
XmiI	GTMKAC	1 cut(s)	1281
XmnI	GAANNNNTTC	2 cut(s)	55, 1659
XspI	CTAG	4 cut(s)	48, 434, 440, 1079

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.