Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000076.1

Orthogroup ID

OG0007437

Physical Location & Seq

Genomic Coordinates Reverse (-)

31148 .. 32326

Gene Structure 1179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000076.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

atgtgtgatgatcgcaagtcttttccaattaagagagacaagaagaactcacaaaggtcttatcttgttccaattggatctcataatctgaagtctgggttgaatatgcagattttccctgagctgctgcagaaagattctgtcctcaaattagaaggtaaacaagagcttgttatgtatttgaatgggaaacttgttcttagcaacagagctctggccaagattataaccagatacaaaaaggatggggatatttccgagctttcaaaacttttactcaaaattcaaaaggatttatgttcattaagaggatccagattgggcaatgatgtgattcacgcttgcattcatttaggttggctagaaactgctcatgacattttagatgacatggaaacagctgaggctcccatgggctatagtacctgtatgtcactcctgacagcctattacaaaagaaaaatgtttccagaagcaaaggcattgcttaaacagatgagaaaggctggtttgcttgaaaatttatctgatgagatggttgcctcgacatgtctatcagtagtagactcaattgccctttgtacaagtgcatcaatgtccaccagtaaatctgatcaggcaaatgctttggttcaggaaatgagagatgagaaagaggaaattccttgtagggtttgtcagttcaattcttccatcaactttttttgcaaggccaaaatgattgatgatgctctaaagacatacaaaagaatgcaggagttgaaaattcaccccactgaggtaacttttacctatatgataaatgtgtattcttctctaggaatgttccgtaatatcacattcttgtggggggacatgaagaggaatatggataatggaaatttggtggtaagcagggatctgtatgagtacctgctactgaactttctccgtggtggttactttgagagagtcatggaggtcattaactatatgaaggagcacagtatgtttgctgacaagtggatgtacagaagtgagtttttaaagcttcataagaatctttataggaacttgaaggcatcagaagccagaacggatgctcagaggaaaagacttgaatatgttcaggcatttaggaaatgggcgggaaatttactgcaagactctggctgctgtgccttttggattatcaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

392

Amino Acids

45.35

Weight (kDa)

9.1

Isoelectric Point (pI)

38.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17616
fragaria_vesca	FvH4_5g20640 FvH4_5g20640 FvH4_5g20640
malus_domestica	MD14G1082200.v1.1 MD14G1090100.v1.1
prunus_persica	Prupe.2G056400_v2.0.a1 Prupe.7G036400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0206021 RchiOBHm_Chr7g0206121 RchiOBHm_Chr7g0206131
rosa_laevigata	RLG00000003334 RLG00000003337
rosa_multiflora	Rmu_sc0000076.1_g000009 Rmu_sc0000076.1_g000017 Rmu_sc0004084.1_g000022
rosa_roxburghii	Rroxscaffold_3G00251830
rosa_rugosa	Rorug07G0094500 Rorug07G0094500
rosa_samantha	Rh7AG226700 Rh7BG222900 Rh7CG240700 Rh7DG232700
rosa_wichuraiana	Rw0G012920 Rw7G019570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	227
Acc36I	ACCTGC	1 cut(s)	921
AccI	GTMKAC	1 cut(s)	564
AciI	CCGC	1 cut(s)	1127
AclWI	GGATC	4 cut(s)	85, 306, 319, 906
AcoI	YGGCCR	1 cut(s)	216
AcsI	RAATTY	6 cut(s)	282, 520, 660, 765, 880, 1132
AcuI	CTGAAG	1 cut(s)	110
AfaI	GTAC	4 cut(s)	424, 583, 911, 1010
AfiI	CCNNNNNNNGG	1 cut(s)	778
AflIII	ACRYGT	1 cut(s)	548
AgsI	TTSAA	9 cut(s)	103, 184, 267, 287, 518, 685, 763, 1057, 1100
AluBI	AGCT	6 cut(s)	124, 169, 212, 262, 401, 1030
AluI	AGCT	6 cut(s)	124, 169, 212, 262, 401, 1030
Alw21I	GWGCWC	2 cut(s)	214, 984
Alw26I	GTCTC	1 cut(s)	30
AlwI	GGATC	4 cut(s)	85, 306, 319, 906
AoxI	GGCC	2 cut(s)	216, 711
ApeKI	GCWGC	3 cut(s)	124, 127, 1152
ApoI	RAATTY	6 cut(s)	282, 520, 660, 765, 880, 1132
Asp700I	GAANNNNTTC	1 cut(s)	1104
AsuHPI	GGTGA	1 cut(s)	761
BalI	TGGCCA	1 cut(s)	218
BamHI	GGATCC	1 cut(s)	311
BanII	GRGCYC	1 cut(s)	214
Bbv12I	GWGCWC	2 cut(s)	214, 984
BbvCI	CCTCAGC	1 cut(s)	402
BbvI	GCAGC	3 cut(s)	111, 114, 1139
BccI	CCATC	3 cut(s)	239, 529, 701
BclI	TGATCA	1 cut(s)	613
BcoDI	GTCTC	1 cut(s)	30
BfaI	CTAG	2 cut(s)	362, 818
BfmI	CTRYAG	2 cut(s)	128, 418
BfuAI	ACCTGC	1 cut(s)	921
BisI	GCNGC	3 cut(s)	125, 128, 1153
BlsI	GCNGC	3 cut(s)	126, 129, 1154
BmiI	GGNNCC	2 cut(s)	313, 408
BmsI	GCATC	4 cut(s)	599, 718, 1069, 1070
Bpu10I	CCTNAGC	2 cut(s)	120, 402
BsaJI	CCNNGG	2 cut(s)	411, 931
Bsc4I	CCNNNNNNNGG	1 cut(s)	778
Bse1I	ACTGG	1 cut(s)	603
Bse3DI	GCAATG	2 cut(s)	331, 482
BseDI	CCNNGG	2 cut(s)	411, 931
BseGI	GGATG	3 cut(s)	250, 1011, 1084
BseLI	CCNNNNNNNGG	1 cut(s)	778
BseMI	GCAATG	2 cut(s)	331, 482
BseMII	CTCAG	4 cut(s)	111, 393, 768, 1097
BseNI	ACTGG	1 cut(s)	603
BseXI	GCAGC	3 cut(s)	111, 114, 1139
BshFI	GGCC	2 cut(s)	218, 713
BsiHKAI	GWGCWC	2 cut(s)	214, 984
BslFI	GGGAC	1 cut(s)	866
BslI	CCNNNNNNNGG	1 cut(s)	778
BsmAI	GTCTC	1 cut(s)	30
BsmFI	GGGAC	1 cut(s)	866
BsmI	GAATGC	2 cut(s)	345, 756
BsnI	GGCC	2 cut(s)	218, 713
Bsp1286I	GDGCHC	2 cut(s)	214, 984
Bsp1407I	TGTACA	2 cut(s)	581, 1008
Bsp143I	GATC	5 cut(s)	10, 77, 311, 613, 898
Bsp19I	CCATGG	1 cut(s)	411
BspACI	CCGC	1 cut(s)	1127
BspANI	GGCC	2 cut(s)	218, 713
BspCNI	CTCAG	4 cut(s)	112, 394, 769, 1096
BspHI	TCATGA	1 cut(s)	373
BspLI	GGNNCC	2 cut(s)	313, 408
BspMAI	CTGCAG	1 cut(s)	132
BspMI	ACCTGC	1 cut(s)	921
BspPI	GGATC	4 cut(s)	85, 306, 319, 906
BsrDI	GCAATG	2 cut(s)	331, 482
BsrGI	TGTACA	2 cut(s)	581, 1008
BsrI	ACTGG	1 cut(s)	603
BssECI	CCNNGG	2 cut(s)	411, 931
BssMI	GATC	5 cut(s)	10, 77, 311, 613, 898
BssT1I	CCWWGG	1 cut(s)	411
Bst4CI	ACNGT	1 cut(s)	986
Bst6I	CTCTTC	1 cut(s)	854
BstAUI	TGTACA	2 cut(s)	581, 1008
BstC8I	GCNNGC	1 cut(s)	343
BstDEI	CTNAG	5 cut(s)	120, 200, 402, 777, 1083
BstDSI	CCRYGG	2 cut(s)	411, 931
BstF5I	GGATG	3 cut(s)	250, 1011, 1084
BstKTI	GATC	5 cut(s)	13, 80, 314, 616, 901
BstMAI	GTCTC	1 cut(s)	30
BstMBI	GATC	5 cut(s)	10, 77, 311, 613, 898
BstMWI	GCNNNNNNNGC	1 cut(s)	1067
BstNSI	RCATGY	1 cut(s)	552
BstSFI	CTRYAG	2 cut(s)	128, 418
BstV1I	GCAGC	3 cut(s)	111, 114, 1139
BstX2I	RGATCY	3 cut(s)	77, 311, 898
BstYI	RGATCY	3 cut(s)	77, 311, 898
BsuRI	GGCC	2 cut(s)	218, 713
BtgI	CCRYGG	2 cut(s)	411, 931
BtsCI	GGATG	3 cut(s)	250, 1011, 1084
BtsIMutI	CAGTG	1 cut(s)	774
BveI	ACCTGC	1 cut(s)	921
Cac8I	GCNNGC	1 cut(s)	343
CciI	TCATGA	1 cut(s)	373
Csp6I	GTAC	4 cut(s)	423, 582, 910, 1009
CviAII	CATG	6 cut(s)	374, 391, 412, 549, 856, 955
CviQI	GTAC	4 cut(s)	423, 582, 910, 1009
DdeI	CTNAG	5 cut(s)	120, 200, 402, 777, 1083
DpnI	GATC	5 cut(s)	12, 79, 313, 615, 900
DpnII	GATC	5 cut(s)	10, 77, 311, 613, 898
DraI	TTTAAA	1 cut(s)	1026
EaeI	YGGCCR	1 cut(s)	216
Eam1104I	CTCTTC	1 cut(s)	854
EarI	CTCTTC	1 cut(s)	854
Ecl136II	GAGCTC	1 cut(s)	212
Eco130I	CCWWGG	1 cut(s)	411
Eco24I	GRGCYC	1 cut(s)	214
Eco53kI	GAGCTC	1 cut(s)	212
Eco57I	CTGAAG	1 cut(s)	110
EcoICRI	GAGCTC	1 cut(s)	212
EcoT14I	CCWWGG	1 cut(s)	411
EcoT38I	GRGCYC	1 cut(s)	214
ErhI	CCWWGG	1 cut(s)	411
FaeI	CATG	6 cut(s)	377, 394, 415, 552, 859, 958
FaqI	GGGAC	1 cut(s)	866
FatI	CATG	6 cut(s)	373, 390, 411, 548, 855, 954
FauI	CCCGC	1 cut(s)	1120
FbaI	TGATCA	1 cut(s)	613
FblI	GTMKAC	1 cut(s)	564
Fnu4HI	GCNGC	3 cut(s)	125, 128, 1153
FokI	GGATG	3 cut(s)	257, 1018, 1091
FriOI	GRGCYC	1 cut(s)	214
Fsp4HI	GCNGC	3 cut(s)	125, 128, 1153
FspBI	CTAG	2 cut(s)	362, 818
GluI	GCNGC	3 cut(s)	125, 128, 1153
HaeIII	GGCC	2 cut(s)	218, 713
Hin1II	CATG	6 cut(s)	377, 394, 415, 552, 859, 958
HindIII	AAGCTT	1 cut(s)	1028
HinfI	GANTC	6 cut(s)	137, 334, 566, 951, 1039, 1145
HphI	GGTGA	1 cut(s)	761
Hpy166II	GTNNAC	3 cut(s)	161, 565, 600
Hpy188I	TCNGA	6 cut(s)	90, 259, 529, 613, 1066, 1086
Hpy188III	TCNNGA	5 cut(s)	315, 374, 439, 470, 635
Hpy8I	GTNNAC	3 cut(s)	161, 565, 600
HpyAV	CCTTC	3 cut(s)	149, 970, 1051
HpyCH4III	ACNGT	1 cut(s)	986
HpyCH4V	TGCA	7 cut(s)	109, 130, 345, 590, 708, 754, 1141
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1067
HpyF3I	CTNAG	5 cut(s)	120, 200, 402, 777, 1083
Hsp92II	CATG	6 cut(s)	377, 394, 415, 552, 859, 958
Ksp22I	TGATCA	1 cut(s)	613
Kzo9I	GATC	5 cut(s)	10, 77, 311, 613, 898
LmnI	GCTCC	2 cut(s)	412, 979
Lsp1109I	GCAGC	3 cut(s)	111, 114, 1139
LweI	GCATC	4 cut(s)	599, 718, 1069, 1070
MaeI	CTAG	2 cut(s)	362, 818
MaeIII	GTNAC	3 cut(s)	432, 781, 938
MalI	GATC	5 cut(s)	12, 79, 313, 615, 900
MboI	GATC	5 cut(s)	10, 77, 311, 613, 898
MboII	GAAGA	4 cut(s)	55, 681, 804, 871
MfeI	CAATTG	2 cut(s)	72, 570
MflI	RGATCY	3 cut(s)	77, 311, 898
MhlI	GDGCHC	2 cut(s)	214, 984
MlsI	TGGCCA	1 cut(s)	218
MluNI	TGGCCA	1 cut(s)	218
MlyI	GAGTC	3 cut(s)	560, 960, 1139
MnlI	CCTC	9 cut(s)	155, 302, 397, 553, 649, 772, 855, 952, 1080
Mox20I	TGGCCA	1 cut(s)	218
MroXI	GAANNNNTTC	1 cut(s)	1104
MscI	TGGCCA	1 cut(s)	218
MseI	TTAA	5 cut(s)	30, 305, 489, 966, 1025
MslI	CAYNNNNRTG	1 cut(s)	844
Msp20I	TGGCCA	1 cut(s)	218
MspA1I	CMGCKG	1 cut(s)	401
MunI	CAATTG	2 cut(s)	72, 570
Mva1269I	GAATGC	2 cut(s)	345, 756
MwoI	GCNNNNNNNGC	1 cut(s)	1067
NcoI	CCATGG	1 cut(s)	411
NdeII	GATC	5 cut(s)	10, 77, 311, 613, 898
NlaIII	CATG	6 cut(s)	377, 394, 415, 552, 859, 958
NlaIV	GGNNCC	2 cut(s)	313, 408
NmuCI	GTSAC	1 cut(s)	432
NspI	RCATGY	1 cut(s)	552
PagI	TCATGA	1 cut(s)	373
PciI	ACATGT	1 cut(s)	548
PctI	GAATGC	2 cut(s)	345, 756
PdmI	GAANNNNTTC	1 cut(s)	1104
PfeI	GAWTC	3 cut(s)	137, 334, 1039
PkrI	GCNGC	3 cut(s)	126, 129, 1154
PleI	GAGTC	3 cut(s)	560, 959, 1139
PpsI	GAGTC	3 cut(s)	560, 959, 1139
PscI	ACATGT	1 cut(s)	548
PsiI	TTATAA	1 cut(s)	227
Psp124BI	GAGCTC	1 cut(s)	214
PspN4I	GGNNCC	2 cut(s)	313, 408
PstI	CTGCAG	1 cut(s)	132
PsuI	RGATCY	3 cut(s)	77, 311, 898
PvuII	CAGCTG	1 cut(s)	401
RsaI	GTAC	4 cut(s)	424, 583, 911, 1010
RsaNI	GTAC	4 cut(s)	423, 582, 910, 1009
RseI	CAYNNNNRTG	1 cut(s)	844
SacI	GAGCTC	1 cut(s)	214
SaqAI	TTAA	5 cut(s)	30, 305, 489, 966, 1025
SatI	GCNGC	3 cut(s)	125, 128, 1153
Sau3AI	GATC	5 cut(s)	10, 77, 311, 613, 898
SchI	GAGTC	3 cut(s)	560, 960, 1139
SduI	GDGCHC	2 cut(s)	214, 984
SfaNI	GCATC	4 cut(s)	599, 718, 1069, 1070
SfcI	CTRYAG	2 cut(s)	128, 418
SmiMI	CAYNNNNRTG	1 cut(s)	844
SsiI	CCGC	1 cut(s)	1127
SspMI	CTAG	2 cut(s)	362, 818
SstI	GAGCTC	1 cut(s)	214
StyI	CCWWGG	1 cut(s)	411
TaaI	ACNGT	1 cut(s)	986
TaqI	TCGA	1 cut(s)	545
TatI	WGTACW	2 cut(s)	581, 1008
TfiI	GAWTC	3 cut(s)	137, 334, 1039
Tru1I	TTAA	5 cut(s)	30, 305, 489, 966, 1025
Tru9I	TTAA	5 cut(s)	30, 305, 489, 966, 1025
TscAI	CASTG	1 cut(s)	781
TseFI	GTSAC	1 cut(s)	432
TseI	GCWGC	3 cut(s)	124, 127, 1152
Tsp45I	GTSAC	1 cut(s)	432
TspDTI	ATGAA	5 cut(s)	291, 338, 872, 989, 1022
TspGWI	ACGGA	3 cut(s)	818, 920, 1091
TspRI	CASTG	1 cut(s)	781
XapI	RAATTY	6 cut(s)	282, 520, 660, 765, 880, 1132
XceI	RCATGY	1 cut(s)	552
XmiI	GTMKAC	1 cut(s)	564
XmnI	GAANNNNTTC	1 cut(s)	1104
XspI	CTAG	2 cut(s)	362, 818

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.