Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0007437

Physical Location & Seq

Genomic Coordinates Forward (+)

9491055 .. 9491926

Gene Structure 872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1082200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGTGTACTGACAAATGGTTGTATAGAAGTGAGTTTGTAAAACTTCATAAGAATCTTTATAGAAATTTAAAGGCATCAAAAGCCAAAACTGAAGCTCAAAGAAATAGGCTTAAGTATGTCAAGGCATTTAAAAGTGGGCAGAAATTGATTGAAGATCCAAGAGAAGTTTGGAAGTGGTCTCTCATTTTTGTACAGTTACAATTGAAAAGGTACCTATGTTCTTTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

77

Amino Acids

9.29

Weight (kDa)

10.12

Isoelectric Point (pI)

34.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17616
fragaria_vesca	FvH4_5g20640 FvH4_5g20640 FvH4_5g20640
malus_domestica	MD14G1082200.v1.1 MD14G1090100.v1.1
prunus_persica	Prupe.2G056400_v2.0.a1 Prupe.7G036400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0206021 RchiOBHm_Chr7g0206121 RchiOBHm_Chr7g0206131
rosa_laevigata	RLG00000003334 RLG00000003337
rosa_multiflora	Rmu_sc0000076.1_g000009 Rmu_sc0000076.1_g000017 Rmu_sc0004084.1_g000022
rosa_roxburghii	Rroxscaffold_3G00251830
rosa_rugosa	Rorug07G0094500 Rorug07G0094500
rosa_samantha	Rh7AG226700 Rh7BG222900 Rh7CG240700 Rh7DG232700
rosa_wichuraiana	Rw0G012920 Rw7G019570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	210
AccB1I	GGYRCC	1 cut(s)	210
AclWI	GGATC	1 cut(s)	149
AcsI	RAATTY	1 cut(s)	64
AcuI	CTGAAG	1 cut(s)	111
AfaI	GTAC	3 cut(s)	7, 192, 212
AflII	CTTAAG	1 cut(s)	110
AgsI	TTSAA	2 cut(s)	152, 205
AluBI	AGCT	1 cut(s)	95
AluI	AGCT	1 cut(s)	95
Alw26I	GTCTC	1 cut(s)	183
AlwI	GGATC	1 cut(s)	149
ApoI	RAATTY	1 cut(s)	64
Asp718I	GGTACC	1 cut(s)	210
BaeI	ACNNNNGTAYC	1 cut(s)	202
BanI	GGYRCC	1 cut(s)	210
BcoDI	GTCTC	1 cut(s)	183
BfrI	CTTAAG	1 cut(s)	110
BmiI	GGNNCC	1 cut(s)	212
BmsI	GCATC	1 cut(s)	83
BsaI	GGTCTC	1 cut(s)	183
BshNI	GGYRCC	1 cut(s)	210
BsmAI	GTCTC	1 cut(s)	183
Bso31I	GGTCTC	1 cut(s)	183
Bsp1407I	TGTACA	1 cut(s)	190
Bsp143I	GATC	1 cut(s)	154
BspHI	TCATGA	1 cut(s)	227
BspLI	GGNNCC	1 cut(s)	212
BspPI	GGATC	1 cut(s)	149
BspT107I	GGYRCC	1 cut(s)	210
BspTI	CTTAAG	1 cut(s)	110
BspTNI	GGTCTC	1 cut(s)	183
BsrGI	TGTACA	1 cut(s)	190
BssMI	GATC	1 cut(s)	154
Bst4CI	ACNGT	1 cut(s)	195
BstAFI	CTTAAG	1 cut(s)	110
BstAUI	TGTACA	1 cut(s)	190
BstKTI	GATC	1 cut(s)	157
BstMAI	GTCTC	1 cut(s)	183
BstMBI	GATC	1 cut(s)	154
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
CciI	TCATGA	1 cut(s)	227
Csp6I	GTAC	3 cut(s)	6, 191, 211
CviAII	CATG	1 cut(s)	228
CviJI	RGCY	3 cut(s)	83, 95, 109
CviKI_1	RGCY	3 cut(s)	83, 95, 109
CviQI	GTAC	3 cut(s)	6, 191, 211
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
DraI	TTTAAA	2 cut(s)	69, 130
Eco31I	GGTCTC	1 cut(s)	183
Eco57I	CTGAAG	1 cut(s)	111
FaeI	CATG	1 cut(s)	231
FaiI	YATR	6 cut(s)	24, 48, 60, 117, 217, 229
FatI	CATG	1 cut(s)	227
Hin1II	CATG	1 cut(s)	231
HinfI	GANTC	1 cut(s)	52
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188III	TCNNGA	1 cut(s)	228
Hpy8I	GTNNAC	1 cut(s)	6
HpyCH4III	ACNGT	1 cut(s)	195
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
Hsp92II	CATG	1 cut(s)	231
KpnI	GGTACC	1 cut(s)	214
Kzo9I	GATC	1 cut(s)	154
LweI	GCATC	1 cut(s)	83
MaeIII	GTNAC	1 cut(s)	195
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MboII	GAAGA	1 cut(s)	164
MfeI	CAATTG	1 cut(s)	200
MflI	RGATCY	1 cut(s)	154
MluCI	AATT	3 cut(s)	64, 143, 200
MseI	TTAA	3 cut(s)	68, 111, 129
MspCI	CTTAAG	1 cut(s)	110
MunI	CAATTG	1 cut(s)	200
MwoI	GCNNNNNNNGC	1 cut(s)	80
NdeII	GATC	1 cut(s)	154
NlaIII	CATG	1 cut(s)	231
NlaIV	GGNNCC	1 cut(s)	212
PagI	TCATGA	1 cut(s)	227
PfeI	GAWTC	1 cut(s)	52
PspN4I	GGNNCC	1 cut(s)	212
PsuI	RGATCY	1 cut(s)	154
RsaI	GTAC	3 cut(s)	7, 192, 212
RsaNI	GTAC	3 cut(s)	6, 191, 211
SaqAI	TTAA	3 cut(s)	68, 111, 129
Sau3AI	GATC	1 cut(s)	154
SetI	ASST	3 cut(s)	97, 212, 216
SfaNI	GCATC	1 cut(s)	83
SgeI	CNNG	2 cut(s)	133, 171
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	3 cut(s)	64, 143, 200
TaaI	ACNGT	1 cut(s)	195
TasI	AATT	3 cut(s)	64, 143, 200
TatI	WGTACW	2 cut(s)	5, 190
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	3 cut(s)	68, 111, 129
Tru9I	TTAA	3 cut(s)	68, 111, 129
TspDTI	ATGAA	2 cut(s)	35, 216
Vha464I	CTTAAG	1 cut(s)	110
XapI	RAATTY	1 cut(s)	64
XcmI	CCANNNNNNNNNTGG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.