Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0007437

Physical Location & Seq

Genomic Coordinates Forward (+)

6723102 .. 6725188

Gene Structure 2087 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G056400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1980 bp

ATGCATAACTGCTTCATCAAGAGGTATCCTTTGTGTTTTTTTGTGGCTTCAGCTATTCGGAGGACAGCCTTAATAGCAAATTATGACGGGGAATCAGTTCTGAGTATAAGATATGAAAAGCCTGTGGTATCAAGTGTAAGATATGAACAGCATCAAATTTCATCTACTCGAGATTTTTGTGCTAGTGTTCAGCCGGAAAGGCTATGCTGGGAAGGTTCCTCTCATGCAGTTGTGTTGAAAAGGCTCGAAAAAGCCTTGAAGGAACACCAAGTGAATGAAGCATGGGAGTCCTTTATTGATTTTAAAAGGTTGCATGGGTTTCCTGAGGATTTTGTTATCCGTAAGCTAATCACTGAACTTTGCTATTCGTCTGACCCTTACTGGCTACAAAAAGCATGTGATATAGTCTGGGTAATTTTGAAAGAGCGATCAGACTTACTACAGTCTGATATCCTGGCAAAGCTCTCCCTCTCCTTAGCAATACTAATGGACAAACAGAACTTGCCCGCCATGAAGGTATTGTACTTGGTTGTACTGCATATGGTAAAGACTGAGGTTGGGACACTACTTGCATCCAATTTCTTAGTTCAGATTTGTCATTGTTTCCAATGCTCAAGTGTAAACAAGAGCGACCATGCAAAGCTGATGCAACCAGATACAATGATTTTTAACCTTGTCCTTGATGCTTGTGTGAGGTTTAAATTATCATTCAAAGGCCAATGGATTATGGAATTGATGGCTCAAACAGGAGTTGTTGCTGATGCACTCTCTATTATCATTATCGCCCTGATCCATGAGCTGAATGGTCAGAGAGACGAGATAAAGAAATATAAAAGTCACATTGATCAAGTTTCAGCTCCATTGATGCGACATTATCGGCAGTTCTATGATAGTTTGTTGAGTTTGCATTTCAAGTTTAATGACATTGAGGAGGCCACTGAGCTTGTCTTACAAATAGAGATTTCACAGAGGTCTTATCTTGTTCCAATTGGATCTCATAATCTCAAGTCTGGGTTGAATATGCAGATTTTGCCTGAGCTGCTGCAGAACCATTCTGTCCTCAAAATAGAAGGTAAACAAGAGCTTGTTCTTTATTGGAATGCGAAACTTGTACTTATTAACAGGGCTTTGGCCAAGCTCATAAATGGATACAAAAAGGTCGGGGATACTTGCAAGCTTTCAGAACTTTTACTTAAAATACAAAAGGAGTTATGTTCATTAAGAGGATCTGATTTGTGTTCTGATGTGATTGATGCTTGCATTCATTTAGGTTGGCTAGAAACTGCTCATGACCTTTTGGATGACATGGATGCAGCTGTGGCTCCCATGGGCCTTACTACCTTTATGTCACTCTTGGAAGCTTATTACAGAGGAAATATGTTTCGGAAAGCAAAAGCTTTGCTTAAACAAATGAGAAAGGCTGGTTTGCTTCCGAATTTATCTGATGAGATGGTTGTCTCCAAATGTCAACCAATACTAGATATAAGTGCCACGTGTACAAATGTTTCAAGCTCGACTAGTAAATCAGATTTGGCAAATGCTCTGGTTCAGGAAATGAGCGATGAGCAGAAGGAAATCCCTTTTGTTGTTTACCGGTTCAATTCTTCCATCAACTTTTTCTGCAAGGCCAAAATGATGGATGATGCTTTGAAGACGTACAGAAGAATGCAAGAGATGAAAATTCAACCTACTGAGCAAACATTGACCTATATGTTATATGGGTATTCTTCTCTGGGAATGTTTCGTACTATCACGATATTTGGAAATTTGATGGTAAGGAGAGATATCTATGAGTATTTACTACTGAACTTTCTTCGTGGTGGCTACTTTGAGAGAGTGATGGAGGTCATTGACTTTATGAAGGAACATGGTATGTACACGGACAAGTGTTTGTACAGGATTGAGTTTGTAAAACTTCATAAGAATCTTTATAGGAATTTAAAGGCATCAGAGGCCAGAACTGAAGCTCAAAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

660

Amino Acids

75.94

Weight (kDa)

8.46

Isoelectric Point (pI)

38.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17616
fragaria_vesca	FvH4_5g20640 FvH4_5g20640 FvH4_5g20640
malus_domestica	MD14G1082200.v1.1 MD14G1090100.v1.1
prunus_persica	Prupe.2G056400_v2.0.a1 Prupe.7G036400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0206021 RchiOBHm_Chr7g0206121 RchiOBHm_Chr7g0206131
rosa_laevigata	RLG00000003334 RLG00000003337
rosa_multiflora	Rmu_sc0000076.1_g000009 Rmu_sc0000076.1_g000017 Rmu_sc0004084.1_g000022
rosa_roxburghii	Rroxscaffold_3G00251830
rosa_rugosa	Rorug07G0094500 Rorug07G0094500
rosa_samantha	Rh7AG226700 Rh7BG222900 Rh7CG240700 Rh7DG232700
rosa_wichuraiana	Rw0G012920 Rw7G019570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	507
AclWI	GGATC	3 cut(s)	784, 1000, 1234
AcoI	YGGCCR	1 cut(s)	1131
AcsI	RAATTY	5 cut(s)	156, 1435, 1680, 1765, 1936
AcuI	CTGAAG	1 cut(s)	33
AcvI	CACGTG	1 cut(s)	1494
AdeI	CACNNNGTG	1 cut(s)	271
AfaI	GTAC	8 cut(s)	524, 534, 1113, 1498, 1658, 1747, 1877, 1895
AflIII	ACRYGT	1 cut(s)	1493
AgeI	ACCGGT	1 cut(s)	1593
AhlI	ACTAGT	1 cut(s)	1517
AjnI	CCWGG	1 cut(s)	453
Alw26I	GTCTC	2 cut(s)	807, 1462
AlwI	GGATC	3 cut(s)	784, 1000, 1234
Ama87I	CYCGRG	1 cut(s)	168
AoxI	GGCC	6 cut(s)	715, 933, 1131, 1330, 1626, 1953
ApeKI	GCWGC	3 cut(s)	1039, 1042, 1313
ApoI	RAATTY	5 cut(s)	156, 1435, 1680, 1765, 1936
AsiGI	ACCGGT	1 cut(s)	1593
Asp700I	GAANNNNTTC	1 cut(s)	96
AspS9I	GGNCC	1 cut(s)	1330
AvaI	CYCGRG	1 cut(s)	168
AxyI	CCTNAGG	1 cut(s)	324
BalI	TGGCCA	1 cut(s)	1133
BarI	GAAGNNNNNNTAC	2 cut(s)	506, 538
BbrPI	CACGTG	1 cut(s)	1494
BbsI	GAAGAC	1 cut(s)	1658
BbvI	GCAGC	3 cut(s)	1026, 1029, 1325
BccI	CCATC	6 cut(s)	730, 1444, 1616, 1630, 1765, 1834
BciT130I	CCWGG	1 cut(s)	455
BciVI	GTATCC	3 cut(s)	36, 1142, 1159
BclI	TGATCA	1 cut(s)	844
BcoDI	GTCTC	2 cut(s)	807, 1462
BcuI	ACTAGT	1 cut(s)	1517
BfaI	CTAG	4 cut(s)	183, 1277, 1478, 1518
BfmI	CTRYAG	2 cut(s)	440, 1043
BfuI	GTATCC	3 cut(s)	36, 1142, 1159
BglI	GCCNNNNNGGC	1 cut(s)	199
BisI	GCNGC	3 cut(s)	1040, 1043, 1314
BlsI	GCNGC	3 cut(s)	1041, 1044, 1315
Bme1390I	CCNGG	1 cut(s)	455
BmeT110I	CYCGRG	1 cut(s)	168
BmgT120I	GGNCC	1 cut(s)	1330
BmiI	GGNNCC	2 cut(s)	217, 1323
BmrFI	CCNGG	1 cut(s)	455
BpiI	GAAGAC	1 cut(s)	1658
Bpu10I	CCTNAGC	2 cut(s)	475, 1035
BpuEI	CTTGAG	2 cut(s)	598, 989
BsaAI	YACGTR	1 cut(s)	1494
BsaJI	CCNNGG	1 cut(s)	1326
BsaWI	WCCGGW	1 cut(s)	1593
Bse118I	RCCGGY	1 cut(s)	1593
Bse1I	ACTGG	1 cut(s)	386
Bse21I	CCTNAGG	1 cut(s)	324
BseBI	CCWGG	1 cut(s)	455
BseDI	CCNNGG	1 cut(s)	1326
BseGI	GGATG	4 cut(s)	572, 1306, 1315, 1645
BseMII	CTCAG	6 cut(s)	92, 315, 543, 930, 1026, 1683
BseNI	ACTGG	1 cut(s)	386
BseRI	GAGGAG	1 cut(s)	944
BseXI	GCAGC	3 cut(s)	1026, 1029, 1325
BseYI	CCCAGC	1 cut(s)	207
BshFI	GGCC	6 cut(s)	717, 935, 1133, 1332, 1628, 1955
BshTI	ACCGGT	1 cut(s)	1593
BsiHKCI	CYCGRG	1 cut(s)	168
BsiSI	CCGG	2 cut(s)	194, 1594
BslFI	GGGAC	1 cut(s)	574
BsmAI	GTCTC	2 cut(s)	807, 1462
BsmBI	CGTCTC	1 cut(s)	807
BsmFI	GGGAC	1 cut(s)	574
BsmI	GAATGC	3 cut(s)	1105, 1260, 1671
BsnI	GGCC	6 cut(s)	717, 935, 1133, 1332, 1628, 1955
BsoBI	CYCGRG	1 cut(s)	168
Bsp1407I	TGTACA	3 cut(s)	1496, 1875, 1893
Bsp143I	GATC	5 cut(s)	428, 789, 844, 992, 1226
Bsp19I	CCATGG	1 cut(s)	1326
BspACI	CCGC	1 cut(s)	507
BspANI	GGCC	6 cut(s)	717, 935, 1133, 1332, 1628, 1955
BspCNI	CTCAG	6 cut(s)	93, 316, 544, 931, 1027, 1684
BspHI	TCATGA	1 cut(s)	1288
BspLI	GGNNCC	2 cut(s)	217, 1323
BspMAI	CTGCAG	1 cut(s)	1047
BspPI	GGATC	3 cut(s)	784, 1000, 1234
BsrFI	RCCGGY	1 cut(s)	1593
BsrGI	TGTACA	3 cut(s)	1496, 1875, 1893
BsrI	ACTGG	1 cut(s)	386
BssAI	RCCGGY	1 cut(s)	1593
BssECI	CCNNGG	1 cut(s)	1326
BssMI	GATC	5 cut(s)	428, 789, 844, 992, 1226
BssT1I	CCWWGG	1 cut(s)	1326
Bst2UI	CCWGG	1 cut(s)	455
Bst4CI	ACNGT	1 cut(s)	444
BstAPI	GCANNNNNTGC	1 cut(s)	1030
BstAUI	TGTACA	3 cut(s)	1496, 1875, 1893
BstBAI	YACGTR	1 cut(s)	1494
BstC8I	GCNNGC	3 cut(s)	507, 1175, 1258
BstDEI	CTNAG	8 cut(s)	101, 324, 475, 552, 583, 939, 1035, 1692
BstDSI	CCRYGG	1 cut(s)	1326
BstF5I	GGATG	4 cut(s)	572, 1306, 1315, 1645
BstKTI	GATC	5 cut(s)	431, 792, 847, 995, 1229
BstMAI	GTCTC	2 cut(s)	807, 1462
BstMBI	GATC	5 cut(s)	428, 789, 844, 992, 1226
BstMWI	GCNNNNNNNGC	6 cut(s)	74, 199, 1030, 1039, 1319, 1952
BstNI	CCWGG	1 cut(s)	455
BstNSI	RCATGY	1 cut(s)	399
BstSCI	CCNGG	1 cut(s)	453
BstSFI	CTRYAG	2 cut(s)	440, 1043
BstV1I	GCAGC	3 cut(s)	1026, 1029, 1325
BstV2I	GAAGAC	1 cut(s)	1658
BstX2I	RGATCY	2 cut(s)	992, 1226
BstXI	CCANNNNNNTGG	1 cut(s)	1636
BstYI	RGATCY	2 cut(s)	992, 1226
Bsu36I	CCTNAGG	1 cut(s)	324
BsuI	GTATCC	3 cut(s)	36, 1142, 1159
BsuRI	GGCC	6 cut(s)	717, 935, 1133, 1332, 1628, 1955
BtgI	CCRYGG	1 cut(s)	1326
BtgZI	GCGATG	1 cut(s)	1575
BtsCI	GGATG	4 cut(s)	572, 1306, 1315, 1645
BtsIMutI	CAGTG	2 cut(s)	351, 936
Cac8I	GCNNGC	3 cut(s)	507, 1175, 1258
CciI	TCATGA	1 cut(s)	1288
Cfr10I	RCCGGY	1 cut(s)	1593
Cfr13I	GGNCC	1 cut(s)	1330
Csp6I	GTAC	8 cut(s)	523, 533, 1112, 1497, 1657, 1746, 1876, 1894
CspAI	ACCGGT	1 cut(s)	1593
CspCI	CAANNNNNGTGG	2 cut(s)	925, 960
CviQI	GTAC	8 cut(s)	523, 533, 1112, 1497, 1657, 1746, 1876, 1894
DdeI	CTNAG	8 cut(s)	101, 324, 475, 552, 583, 939, 1035, 1692
DpnI	GATC	5 cut(s)	430, 791, 846, 994, 1228
DpnII	GATC	5 cut(s)	428, 789, 844, 992, 1226
DraI	TTTAAA	3 cut(s)	304, 700, 1941
DraIII	CACNNNGTG	1 cut(s)	271
EaeI	YGGCCR	1 cut(s)	1131
Eco130I	CCWWGG	1 cut(s)	1326
Eco32I	GATATC	2 cut(s)	451, 1786
Eco57I	CTGAAG	1 cut(s)	33
Eco72I	CACGTG	1 cut(s)	1494
Eco81I	CCTNAGG	1 cut(s)	324
Eco88I	CYCGRG	1 cut(s)	168
EcoRII	CCWGG	1 cut(s)	453
EcoRV	GATATC	2 cut(s)	451, 1786
EcoT14I	CCWWGG	1 cut(s)	1326
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	1326
Esp3I	CGTCTC	1 cut(s)	807
FalI	AAGNNNNNCTT	2 cut(s)	1386, 1418
FaqI	GGGAC	1 cut(s)	574
FauI	CCCGC	1 cut(s)	514
FauNDI	CATATG	1 cut(s)	540
FbaI	TGATCA	1 cut(s)	844
Fnu4HI	GCNGC	3 cut(s)	1040, 1043, 1314
FokI	GGATG	4 cut(s)	559, 1313, 1322, 1652
Fsp4HI	GCNGC	3 cut(s)	1040, 1043, 1314
FspBI	CTAG	4 cut(s)	183, 1277, 1478, 1518
GluI	GCNGC	3 cut(s)	1040, 1043, 1314
GsaI	CCCAGC	1 cut(s)	211
HaeIII	GGCC	6 cut(s)	717, 935, 1133, 1332, 1628, 1955
HapII	CCGG	2 cut(s)	194, 1594
HincII	GTYRAC	1 cut(s)	1469
HindII	GTYRAC	1 cut(s)	1469
HindIII	AAGCTT	3 cut(s)	1175, 1359, 1395
HinfI	GANTC	3 cut(s)	92, 287, 1924
HpaII	CCGG	2 cut(s)	194, 1594
Hpy166II	GTNNAC	6 cut(s)	622, 1076, 1469, 1497, 1591, 1878
Hpy188III	TCNNGA	6 cut(s)	19, 170, 323, 1289, 1550, 1753
Hpy8I	GTNNAC	6 cut(s)	622, 1076, 1469, 1497, 1591, 1878
HpyAV	CCTTC	6 cut(s)	206, 253, 508, 1064, 1564, 1855
HpyCH4III	ACNGT	1 cut(s)	444
HpyCH4IV	ACGT	2 cut(s)	1493, 1655
HpyF10VI	GCNNNNNNNGC	6 cut(s)	74, 199, 1030, 1039, 1319, 1952
HpyF3I	CTNAG	8 cut(s)	101, 324, 475, 552, 583, 939, 1035, 1692
HpySE526I	ACGT	2 cut(s)	1493, 1655
Ksp22I	TGATCA	1 cut(s)	844
Kzo9I	GATC	5 cut(s)	428, 789, 844, 992, 1226
LmnI	GCTCC	2 cut(s)	862, 1327
Lsp1109I	GCAGC	3 cut(s)	1026, 1029, 1325
MaeI	CTAG	4 cut(s)	183, 1277, 1478, 1518
MaeII	ACGT	2 cut(s)	1493, 1655
MaeIII	GTNAC	2 cut(s)	836, 1347
MalI	GATC	5 cut(s)	430, 791, 846, 994, 1228
MboI	GATC	5 cut(s)	428, 789, 844, 992, 1226
MboII	GAAGA	5 cut(s)	1596, 1663, 1674, 1719, 1805
MfeI	CAATTG	1 cut(s)	987
MflI	RGATCY	2 cut(s)	992, 1226
MlsI	TGGCCA	1 cut(s)	1133
MluNI	TGGCCA	1 cut(s)	1133
MlyI	GAGTC	1 cut(s)	296
Mox20I	TGGCCA	1 cut(s)	1133
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	96
MscI	TGGCCA	1 cut(s)	1133
Msp20I	TGGCCA	1 cut(s)	1133
MspA1I	CMGCKG	1 cut(s)	1316
MspI	CCGG	2 cut(s)	194, 1594
MspR9I	CCNGG	1 cut(s)	455
MunI	CAATTG	1 cut(s)	987
Mva1269I	GAATGC	3 cut(s)	1105, 1260, 1671
MvaI	CCWGG	1 cut(s)	455
MwoI	GCNNNNNNNGC	6 cut(s)	74, 199, 1030, 1039, 1319, 1952
NcoI	CCATGG	1 cut(s)	1326
NdeI	CATATG	1 cut(s)	540
NdeII	GATC	5 cut(s)	428, 789, 844, 992, 1226
NlaIV	GGNNCC	2 cut(s)	217, 1323
NmuCI	GTSAC	2 cut(s)	836, 1347
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	399
PaeR7I	CTCGAG	1 cut(s)	168
PagI	TCATGA	1 cut(s)	1288
PctI	GAATGC	3 cut(s)	1105, 1260, 1671
PdmI	GAANNNNTTC	1 cut(s)	96
PfeI	GAWTC	2 cut(s)	92, 1924
PinAI	ACCGGT	1 cut(s)	1593
PkrI	GCNGC	3 cut(s)	1041, 1044, 1315
PleI	GAGTC	1 cut(s)	295
PmaCI	CACGTG	1 cut(s)	1494
PmlI	CACGTG	1 cut(s)	1494
PpsI	GAGTC	1 cut(s)	295
Ppu21I	YACGTR	1 cut(s)	1494
Psp6I	CCWGG	1 cut(s)	453
PspCI	CACGTG	1 cut(s)	1494
PspFI	CCCAGC	1 cut(s)	207
PspGI	CCWGG	1 cut(s)	453
PspN4I	GGNNCC	2 cut(s)	217, 1323
PspPI	GGNCC	1 cut(s)	1330
PstI	CTGCAG	1 cut(s)	1047
PsuI	RGATCY	2 cut(s)	992, 1226
PvuII	CAGCTG	1 cut(s)	1316
RsaI	GTAC	8 cut(s)	524, 534, 1113, 1498, 1658, 1747, 1877, 1895
RsaNI	GTAC	8 cut(s)	523, 533, 1112, 1497, 1657, 1746, 1876, 1894
SatI	GCNGC	3 cut(s)	1040, 1043, 1314
Sau3AI	GATC	5 cut(s)	428, 789, 844, 992, 1226
Sau96I	GGNCC	1 cut(s)	1330
SchI	GAGTC	1 cut(s)	296
ScrFI	CCNGG	1 cut(s)	455
SfcI	CTRYAG	2 cut(s)	440, 1043
Sfr274I	CTCGAG	1 cut(s)	168
SlaI	CTCGAG	1 cut(s)	168
SmlI	CTYRAG	3 cut(s)	168, 613, 1004
SmoI	CTYRAG	3 cut(s)	168, 613, 1004
SpeI	ACTAGT	1 cut(s)	1517
SsiI	CCGC	1 cut(s)	507
SspMI	CTAG	4 cut(s)	183, 1277, 1478, 1518
StyD4I	CCNGG	1 cut(s)	453
StyI	CCWWGG	1 cut(s)	1326
TaaI	ACNGT	1 cut(s)	444
TaiI	ACGT	2 cut(s)	1496, 1658
TaqI	TCGA	3 cut(s)	169, 246, 1514
TatI	WGTACW	6 cut(s)	522, 532, 1111, 1496, 1875, 1893
TfiI	GAWTC	2 cut(s)	92, 1924
TscAI	CASTG	2 cut(s)	358, 943
TseFI	GTSAC	2 cut(s)	836, 1347
TseI	GCWGC	3 cut(s)	1039, 1042, 1313
Tsp45I	GTSAC	2 cut(s)	836, 1347
TspGWI	ACGGA	2 cut(s)	329, 1895
TspRI	CASTG	2 cut(s)	358, 943
XapI	RAATTY	5 cut(s)	156, 1435, 1680, 1765, 1936
XceI	RCATGY	1 cut(s)	399
XcmI	CCANNNNNNNNNTGG	1 cut(s)	800
XhoI	CTCGAG	1 cut(s)	168
XmnI	GAANNNNTTC	1 cut(s)	96
XspI	CTAG	4 cut(s)	183, 1277, 1478, 1518
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.