Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0007437

Physical Location & Seq

Genomic Coordinates Forward (+)

19163517 .. 19165679

Gene Structure 2163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG222900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2163 bp

ATGGCACTAATATTGAGTAAAGAAATTCTTGGGCGTAACTGCATCACTAGAAGGTGTTCATTGGGATTCTACGTGGCTTCAGTTATTCAGAGGACAACCCTATTATCAAATTATGATACAGAATTAGTTGCGAGTGGAAGATCTATAAATTCTACGGTATCAAGTATAAGCTATGAACAGCATCGGAATTCATCTTCCCAAAACTTTTGTACTGCTGTTCATCCTGAAAGGCTGTGTTGGGAAGGTTCTTCTCGTGCAGCTATGTTGAAAAGGCTCGAAGTAGCCTTGAAGGAACATCAAGTGAATGAAGTATGGGAATCATTTATTGATTTTAAAAGGTTGCATGGCTTTCCTGAGGATTTTCTTATTCATAAGCTAATTACTGAACTGTGCTATTCATCTGACCCTTACTGGCTACAAAAAGCATGTGATCTAGTCCTAGTAAATTTGAGAGAGAGATCAGACTTACTTCAGTCTGATATCCTGACAAAGCTCTCCCTCTCCTTAGCACGCTGTCAAATGCCTAAGCCTGCTATGATGATTCTGCGATTAATGCTGGAGAAAAGGAATTTACCCCCCATGAATGTACTGTGCTTGGTTGCTCTGCATATGGTAAAGACTGAGATTGGGACTCACCTTGCTTCAAATTTCTTAATTCAAATTTGTCATCACTTCCAATGCTTGAGAGCAAAGAAGAGTGACCACGCAAAGCTGTTGCAACCTGATACAATGATTTTTAACCTTGTTCTTGATGCCTGTGTGAAGTTCAAATTATCTCTGAAAGGCCAGCAGATCATGGAATTGATGCCTGCAACAGGAGTGGTTGCTGATGCACACTCTATTGTCATTATTGCCCAAATTCATGAATTGAATGGTCAGAGGGAGGAGATAAAGAATTATAAATGTTATATGGATCAGGTTTCAGCTCCATTTGTTCAACATTATCGGCAATTTTATGATAGTTTGTTGAGCTTGCATTTCAAGTTTAATGATGTGGTTGCTGCCAGTGAGCTTATATTACAAATGTGTGATGATTGCAAGTCTCTTCCAATTAAGAGAGACAAGAAGAACTCACAAAGGTCTTATCTTGTTCCAATTGGATCTCATAATCTGAAGTCTGGGTTGAATTTGCAGATTTTCCCTGAGCTGCTGCAGAAAGATTCTGTCCTCAAATTAGAAGGTAAACAAGAGCTTGTTATGTATTTGAATGGGAAACTTGTTCTTAGCAACAGAGCTCTGGCCAAGCTTATAACCAGATACAAAAAGGATGGGGATATTTCCGAGCTTTCAAAACTTTTACTCAAAATTCAAAAGGTTTTATGTTCATTAAGAGGATCCAGATTGGGCAATGATGTGATTCACGCTTGCATTCATTTAGGTTGGCTAGAAACTGCTCATGACATTTTAGATGACATGGAAACAGCTGAGGCTCCCATGGGCTATAGTACCTGTATGTCACTCCTGACAGCCTATTACAAGAGAAAAATGTTTCCAGAAGCAAAGGCATTGCTTAAACAGATGAGAAAGGCTGGTTTGCTTGTAAATTTATCTGATGAGATGGTTGCCTCGACATGTCTATCAGTAGTAGACTCAACTGCCCTTTGTACAAGTGCATCAATTTCCACCAGTAAATCTGATCTGGCAAATGCTTTGGTTCAGGAAATGAGAGATGAGAAAGAGGAAATTCCTTCTAGGGTTTATCAGTTCAATTCTTCCATCAACTTTTTTTGCAAGGCCAAAATGATTGATGATGCTCTAAAGACATACAAAAGAATGCAGGAGTTGAAAATTCACCCCACGGAGGAAACTTTTACCTATATGATAAACGTGTATTCTTCTCTAGGAATGTTCCGTAATATCACATTCTTGTGGGGGGACATGAAGAGGAATATGGATAATGGAAATTTGGTGGTAAGCAGGGATCTGTATGAGTACCTGCTACTGAACTTTCTCCGTGGTGGTTACTTTGAGAGAATCATGGAGGTCATTAACTATATGAAGGAGCACAGTATGTTTGCTGACAAGTGGATGTACAGAAGTGAGTTTTTAAAGCTTCATAAGAATCTTTATAGGAACTTGAAGGCATCAGAAGCCAGAACGGATGCTCAGAGGAAAAGACTTGAATATGTTCAGGCATTTAGGAAATGGGTGGGCATTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

720

Amino Acids

82.82

Weight (kDa)

8.91

Isoelectric Point (pI)

45.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_At1g68980	PF25245	85 - 205	8e-10	At1g68980, TPR repeats
PPR_2	PF13041	569 - 611	3.5e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17616
fragaria_vesca	FvH4_5g20640 FvH4_5g20640 FvH4_5g20640
malus_domestica	MD14G1082200.v1.1 MD14G1090100.v1.1
prunus_persica	Prupe.2G056400_v2.0.a1 Prupe.7G036400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0206021 RchiOBHm_Chr7g0206121 RchiOBHm_Chr7g0206131
rosa_laevigata	RLG00000003334 RLG00000003337
rosa_multiflora	Rmu_sc0000076.1_g000009 Rmu_sc0000076.1_g000017 Rmu_sc0004084.1_g000022
rosa_roxburghii	Rroxscaffold_3G00251830
rosa_rugosa	Rorug07G0094500 Rorug07G0094500
rosa_samantha	Rh7AG226700 Rh7BG222900 Rh7CG240700 Rh7DG232700
rosa_wichuraiana	Rw0G012920 Rw7G019570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	900, 1250
Acc36I	ACCTGC	1 cut(s)	1944
AccI	GTMKAC	1 cut(s)	1587
AclWI	GGATC	5 cut(s)	921, 1108, 1329, 1342, 1929
AcoI	YGGCCR	1 cut(s)	1239
AcuI	CTGAAG	3 cut(s)	63, 455, 1133
AfaI	GTAC	6 cut(s)	211, 588, 1447, 1606, 1934, 2033
AfiI	CCNNNNNNNGG	2 cut(s)	815, 1801
AflIII	ACRYGT	2 cut(s)	1571, 1827
Alw21I	GWGCWC	2 cut(s)	1237, 2007
Alw26I	GTCTC	2 cut(s)	1047, 1053
AlwI	GGATC	5 cut(s)	921, 1108, 1329, 1342, 1929
AoxI	GGCC	3 cut(s)	784, 1239, 1734
ApeKI	GCWGC	4 cut(s)	257, 1001, 1147, 1150
AseI	ATTAAT	1 cut(s)	551
Asp700I	GAANNNNTTC	2 cut(s)	55, 2127
AsuHPI	GGTGA	2 cut(s)	626, 1784
AxyI	CCTNAGG	1 cut(s)	354
BalI	TGGCCA	1 cut(s)	1241
BamHI	GGATCC	1 cut(s)	1334
BanII	GRGCYC	1 cut(s)	1237
BauI	CACGAG	1 cut(s)	252
Bbv12I	GWGCWC	2 cut(s)	1237, 2007
BbvCI	CCTCAGC	1 cut(s)	1425
BbvI	GCAGC	4 cut(s)	269, 988, 1134, 1137
BccI	CCATC	3 cut(s)	1262, 1552, 1724
BcoDI	GTCTC	2 cut(s)	1047, 1053
BfaI	CTAG	6 cut(s)	48, 434, 440, 1385, 1692, 1841
BfmI	CTRYAG	2 cut(s)	1151, 1441
BfuAI	ACCTGC	1 cut(s)	1944
BglII	AGATCT	1 cut(s)	140
BisI	GCNGC	4 cut(s)	258, 1002, 1148, 1151
BlsI	GCNGC	4 cut(s)	259, 1003, 1149, 1152
BmiI	GGNNCC	2 cut(s)	1336, 1431
BmsI	GCATC	9 cut(s)	51, 190, 742, 795, 820, 1622, 1741, 2092, 2093
BpmI	CTGGAG	1 cut(s)	578
Bpu10I	CCTNAGC	4 cut(s)	505, 525, 1143, 1425
BpuEI	CTTGAG	1 cut(s)	703
BsaAI	YACGTR	1 cut(s)	73
BsaJI	CCNNGG	3 cut(s)	1434, 1797, 1954
Bsc4I	CCNNNNNNNGG	2 cut(s)	815, 1801
Bse1I	ACTGG	3 cut(s)	416, 1005, 1626
Bse21I	CCTNAGG	1 cut(s)	354
Bse3DI	GCAATG	2 cut(s)	1354, 1505
BseDI	CCNNGG	3 cut(s)	1434, 1797, 1954
BseGI	GGATG	4 cut(s)	220, 1273, 2034, 2107
BseLI	CCNNNNNNNGG	2 cut(s)	815, 1801
BseMI	GCAATG	2 cut(s)	1354, 1505
BseMII	CTCAG	5 cut(s)	345, 612, 1134, 1416, 2120
BseNI	ACTGG	3 cut(s)	416, 1005, 1626
BseRI	GAGGAG	1 cut(s)	899
BseXI	GCAGC	4 cut(s)	269, 988, 1134, 1137
BsgI	GTGCAG	1 cut(s)	276
BshFI	GGCC	3 cut(s)	786, 1241, 1736
BsiHKAI	GWGCWC	2 cut(s)	1237, 2007
BslFI	GGGAC	2 cut(s)	643, 1889
BslI	CCNNNNNNNGG	2 cut(s)	815, 1801
BsmAI	GTCTC	2 cut(s)	1047, 1053
BsmFI	GGGAC	2 cut(s)	643, 1889
BsmI	GAATGC	2 cut(s)	1368, 1779
BsnI	GGCC	3 cut(s)	786, 1241, 1736
Bsp1286I	GDGCHC	2 cut(s)	1237, 2007
Bsp1407I	TGTACA	2 cut(s)	1604, 2031
Bsp143I	GATC	9 cut(s)	140, 430, 458, 792, 913, 1100, 1334, 1636, 1921
Bsp19I	CCATGG	1 cut(s)	1434
BspANI	GGCC	3 cut(s)	786, 1241, 1736
BspCNI	CTCAG	5 cut(s)	346, 613, 1135, 1417, 2119
BspHI	TCATGA	2 cut(s)	862, 1396
BspLI	GGNNCC	2 cut(s)	1336, 1431
BspMAI	CTGCAG	1 cut(s)	1155
BspMI	ACCTGC	1 cut(s)	1944
BspPI	GGATC	5 cut(s)	921, 1108, 1329, 1342, 1929
BsrDI	GCAATG	2 cut(s)	1354, 1505
BsrGI	TGTACA	2 cut(s)	1604, 2031
BsrI	ACTGG	3 cut(s)	416, 1005, 1626
BssECI	CCNNGG	3 cut(s)	1434, 1797, 1954
BssMI	GATC	9 cut(s)	140, 430, 458, 792, 913, 1100, 1334, 1636, 1921
BssSI	CACGAG	1 cut(s)	252
BssT1I	CCWWGG	1 cut(s)	1434
Bst2BI	CACGAG	1 cut(s)	252
Bst4CI	ACNGT	4 cut(s)	157, 390, 591, 2009
Bst6I	CTCTTC	3 cut(s)	689, 1050, 1877
BstAUI	TGTACA	2 cut(s)	1604, 2031
BstBAI	YACGTR	1 cut(s)	73
BstC8I	GCNNGC	6 cut(s)	511, 531, 788, 810, 974, 1366
BstDEI	CTNAG	8 cut(s)	354, 505, 525, 621, 1143, 1223, 1425, 2106
BstDSI	CCRYGG	3 cut(s)	1434, 1797, 1954
BstENI	CCTNNNNNAGG	1 cut(s)	813
BstF5I	GGATG	4 cut(s)	220, 1273, 2034, 2107
BstKTI	GATC	9 cut(s)	143, 433, 461, 795, 916, 1103, 1337, 1639, 1924
BstMAI	GTCTC	2 cut(s)	1047, 1053
BstMBI	GATC	9 cut(s)	140, 430, 458, 792, 913, 1100, 1334, 1636, 1921
BstMWI	GCNNNNNNNGC	2 cut(s)	553, 2090
BstNSI	RCATGY	2 cut(s)	429, 1575
BstSFI	CTRYAG	2 cut(s)	1151, 1441
BstV1I	GCAGC	4 cut(s)	269, 988, 1134, 1137
BstX2I	RGATCY	4 cut(s)	140, 1100, 1334, 1921
BstYI	RGATCY	4 cut(s)	140, 1100, 1334, 1921
Bsu36I	CCTNAGG	1 cut(s)	354
BsuRI	GGCC	3 cut(s)	786, 1241, 1736
BtgI	CCRYGG	3 cut(s)	1434, 1797, 1954
BtsCI	GGATG	4 cut(s)	220, 1273, 2034, 2107
BtsIMutI	CAGTG	1 cut(s)	1012
BveI	ACCTGC	1 cut(s)	1944
Cac8I	GCNNGC	6 cut(s)	511, 531, 788, 810, 974, 1366
CciI	TCATGA	2 cut(s)	862, 1396
Csp6I	GTAC	6 cut(s)	210, 587, 1446, 1605, 1933, 2032
CspCI	CAANNNNNGTGG	2 cut(s)	801, 836
CviQI	GTAC	6 cut(s)	210, 587, 1446, 1605, 1933, 2032
DdeI	CTNAG	8 cut(s)	354, 505, 525, 621, 1143, 1223, 1425, 2106
DpnI	GATC	9 cut(s)	142, 432, 460, 794, 915, 1102, 1336, 1638, 1923
DpnII	GATC	9 cut(s)	140, 430, 458, 792, 913, 1100, 1334, 1636, 1921
DraI	TTTAAA	2 cut(s)	334, 2049
EaeI	YGGCCR	1 cut(s)	1239
Eam1104I	CTCTTC	3 cut(s)	689, 1050, 1877
EarI	CTCTTC	3 cut(s)	689, 1050, 1877
Ecl136II	GAGCTC	1 cut(s)	1235
Eco130I	CCWWGG	1 cut(s)	1434
Eco24I	GRGCYC	1 cut(s)	1237
Eco32I	GATATC	1 cut(s)	481
Eco53kI	GAGCTC	1 cut(s)	1235
Eco57I	CTGAAG	3 cut(s)	63, 455, 1133
Eco81I	CCTNAGG	1 cut(s)	354
EcoICRI	GAGCTC	1 cut(s)	1235
EcoNI	CCTNNNNNAGG	1 cut(s)	813
EcoRI	GAATTC	1 cut(s)	187
EcoRV	GATATC	1 cut(s)	481
EcoT14I	CCWWGG	1 cut(s)	1434
EcoT38I	GRGCYC	1 cut(s)	1237
ErhI	CCWWGG	1 cut(s)	1434
FalI	AAGNNNNNCTT	2 cut(s)	12, 44
FaqI	GGGAC	2 cut(s)	643, 1889
FauNDI	CATATG	1 cut(s)	609
FblI	GTMKAC	1 cut(s)	1587
Fnu4HI	GCNGC	4 cut(s)	258, 1002, 1148, 1151
FokI	GGATG	4 cut(s)	207, 1280, 2041, 2114
FriOI	GRGCYC	1 cut(s)	1237
Fsp4HI	GCNGC	4 cut(s)	258, 1002, 1148, 1151
FspBI	CTAG	6 cut(s)	48, 434, 440, 1385, 1692, 1841
GluI	GCNGC	4 cut(s)	258, 1002, 1148, 1151
GsuI	CTGGAG	1 cut(s)	578
HaeIII	GGCC	3 cut(s)	786, 1241, 1736
HindIII	AAGCTT	2 cut(s)	1244, 2051
HinfI	GANTC	9 cut(s)	66, 317, 541, 631, 1160, 1357, 1589, 1974, 2062
HphI	GGTGA	2 cut(s)	626, 1784
Hpy166II	GTNNAC	2 cut(s)	1184, 1588
Hpy8I	GTNNAC	2 cut(s)	1184, 1588
HpyAV	CCTTC	7 cut(s)	45, 236, 283, 1172, 1698, 1993, 2074
HpyCH4III	ACNGT	4 cut(s)	157, 390, 591, 2009
HpyCH4IV	ACGT	2 cut(s)	72, 1827
HpyF10VI	GCNNNNNNNGC	2 cut(s)	553, 2090
HpyF3I	CTNAG	8 cut(s)	354, 505, 525, 621, 1143, 1223, 1425, 2106
HpySE526I	ACGT	2 cut(s)	72, 1827
Kzo9I	GATC	9 cut(s)	140, 430, 458, 792, 913, 1100, 1334, 1636, 1921
LmnI	GCTCC	3 cut(s)	931, 1435, 2002
Lsp1109I	GCAGC	4 cut(s)	269, 988, 1134, 1137
LweI	GCATC	9 cut(s)	51, 190, 742, 795, 820, 1622, 1741, 2092, 2093
MaeI	CTAG	6 cut(s)	48, 434, 440, 1385, 1692, 1841
MaeII	ACGT	2 cut(s)	72, 1827
MaeIII	GTNAC	4 cut(s)	35, 698, 1455, 1961
MalI	GATC	9 cut(s)	142, 432, 460, 794, 915, 1102, 1336, 1638, 1923
MboI	GATC	9 cut(s)	140, 430, 458, 792, 913, 1100, 1334, 1636, 1921
MboII	GAAGA	9 cut(s)	150, 186, 240, 706, 1037, 1078, 1704, 1827, 1894
MfeI	CAATTG	1 cut(s)	1095
MflI	RGATCY	4 cut(s)	140, 1100, 1334, 1921
MhlI	GDGCHC	2 cut(s)	1237, 2007
MlsI	TGGCCA	1 cut(s)	1241
MluNI	TGGCCA	1 cut(s)	1241
MlyI	GAGTC	2 cut(s)	625, 1583
Mox20I	TGGCCA	1 cut(s)	1241
MroXI	GAANNNNTTC	2 cut(s)	55, 2127
MscI	TGGCCA	1 cut(s)	1241
MslI	CAYNNNNRTG	1 cut(s)	1867
Msp20I	TGGCCA	1 cut(s)	1241
MspA1I	CMGCKG	1 cut(s)	1424
MunI	CAATTG	1 cut(s)	1095
Mva1269I	GAATGC	2 cut(s)	1368, 1779
MwoI	GCNNNNNNNGC	2 cut(s)	553, 2090
NcoI	CCATGG	1 cut(s)	1434
NdeI	CATATG	1 cut(s)	609
NdeII	GATC	9 cut(s)	140, 430, 458, 792, 913, 1100, 1334, 1636, 1921
NlaIV	GGNNCC	2 cut(s)	1336, 1431
NmuCI	GTSAC	2 cut(s)	698, 1455
NspI	RCATGY	2 cut(s)	429, 1575
PagI	TCATGA	2 cut(s)	862, 1396
PciI	ACATGT	1 cut(s)	1571
PctI	GAATGC	2 cut(s)	1368, 1779
PdmI	GAANNNNTTC	2 cut(s)	55, 2127
PfeI	GAWTC	7 cut(s)	66, 317, 541, 1160, 1357, 1974, 2062
PkrI	GCNGC	4 cut(s)	259, 1003, 1149, 1152
PleI	GAGTC	2 cut(s)	625, 1583
PpsI	GAGTC	2 cut(s)	625, 1583
Ppu21I	YACGTR	1 cut(s)	73
PscI	ACATGT	1 cut(s)	1571
PshBI	ATTAAT	1 cut(s)	551
PsiI	TTATAA	2 cut(s)	900, 1250
Psp124BI	GAGCTC	1 cut(s)	1237
PspN4I	GGNNCC	2 cut(s)	1336, 1431
PstI	CTGCAG	1 cut(s)	1155
PsuI	RGATCY	4 cut(s)	140, 1100, 1334, 1921
PvuII	CAGCTG	1 cut(s)	1424
RsaI	GTAC	6 cut(s)	211, 588, 1447, 1606, 1934, 2033
RsaNI	GTAC	6 cut(s)	210, 587, 1446, 1605, 1933, 2032
RseI	CAYNNNNRTG	1 cut(s)	1867
SacI	GAGCTC	1 cut(s)	1237
SatI	GCNGC	4 cut(s)	258, 1002, 1148, 1151
Sau3AI	GATC	9 cut(s)	140, 430, 458, 792, 913, 1100, 1334, 1636, 1921
SchI	GAGTC	2 cut(s)	625, 1583
SduI	GDGCHC	2 cut(s)	1237, 2007
SfaNI	GCATC	9 cut(s)	51, 190, 742, 795, 820, 1622, 1741, 2092, 2093
SfcI	CTRYAG	2 cut(s)	1151, 1441
SmiMI	CAYNNNNRTG	1 cut(s)	1867
SmlI	CTYRAG	1 cut(s)	682
SmoI	CTYRAG	1 cut(s)	682
SspI	AATATT	1 cut(s)	12
SspMI	CTAG	6 cut(s)	48, 434, 440, 1385, 1692, 1841
SstI	GAGCTC	1 cut(s)	1237
StyI	CCWWGG	1 cut(s)	1434
TaaI	ACNGT	4 cut(s)	157, 390, 591, 2009
TaiI	ACGT	2 cut(s)	75, 1830
TaqI	TCGA	2 cut(s)	276, 1568
TatI	WGTACW	4 cut(s)	209, 586, 1604, 2031
TfiI	GAWTC	7 cut(s)	66, 317, 541, 1160, 1357, 1974, 2062
TscAI	CASTG	1 cut(s)	1012
TseFI	GTSAC	2 cut(s)	698, 1455
TseI	GCWGC	4 cut(s)	257, 1001, 1147, 1150
Tsp45I	GTSAC	2 cut(s)	698, 1455
TspGWI	ACGGA	4 cut(s)	1814, 1841, 1943, 2114
TspRI	CASTG	1 cut(s)	1012
VspI	ATTAAT	1 cut(s)	551
XagI	CCTNNNNNAGG	1 cut(s)	813
XceI	RCATGY	2 cut(s)	429, 1575
XmiI	GTMKAC	1 cut(s)	1587
XmnI	GAANNNNTTC	2 cut(s)	55, 2127
XspI	CTAG	6 cut(s)	48, 434, 440, 1385, 1692, 1841

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.