FvH4_5g21350

Belongs to the STXBP unc-18 SEC1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0005697
Physical Location & Seq
Forward (+)
12871647 .. 12872736
1090 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g21350.t1

Sequence Viewer

Length: 948 bp
ATGAAGTCGTATAAGTTAGATAGCTCAGACCCGTTTTGGGCAGCAAATCGGTCTTTAGCATTTCCTGAAGTGGCAGGTGAGATTGAGAGCCAATTGGCTAAATATAAGAAGGACGTTGATGTGGTAAATAGAAGGACTGGAAGTGGAAACACAAAACATTTGATGAGGGCAGTGAACTCCTTACCTGAGTTGACTGCAAGGAAGCAGGTGATTGATAAGCACACAAATATTGCAACTGTGTTATTGGGCGAGATCAAGGAGAGGTCGCTTGATGCTTTTGCCAACAAGGAGTATGACATGATGGCTAGAGGGGGCATTGATCAAACAGAAGTTTTGGGTGCGCTTAAAGGGAAAGGAACTAAGATGGATAAGCTGCGGTTTGCTATCATGTATCTCATTTCATCAGAAACCATTAACCAGGCACAAGTCGAATTAGTGGAAGCAGCCCTTAGGGAGTGTGAGGTTGATACCCGCGCATTTCAGTATGTGAAGAAGATCAAGTCCCTGAATGTTTCGTTGGCATCAGCAAATTATACCAGCAGAAGCAACATAGTTGATTGGGCAAAGAGACTCTATGGGCAGTCAATTAGTGCTGTGACCGCCAGTGTGAAAAATTTGTTATCTAGTGATAAGCAGCTGGCATTAACTAGGACAGTGGAGGCTTTGATGGAGGGAAAGCCTAATCCAGAGGTTGATTCTTACCTTATGTTTGATCCTCGTGCTCCAAAGCCAAGCTCGGGAAGCAACCATTTAAAAGGACCTTTTATGGAAGCTATAGTGTTCATGGTTGGTGGTGGCAACTATGTGGAGTACGGGAGCCTGCAAGAGCTTGTACAGCGTCAACAGCTAGCCTGTGAGGCATGTTATCTATGGAACAACAGAAATCCTCACAGGAGGGGAGTTTGTGGAGCAGCTTGCTCTTTTGGGTCAGAAAATGGGACTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sec1

Protein Analysis

316

Amino Acids

34.89

Weight (kDa)

9.04

Isoelectric Point (pI)

39.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec1 PF00995 3 - 286 7.4e-45 Sec1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 65, 196
Acc36I ACCTGC 2 cut(s) 65, 196
AccII CGCG 1 cut(s) 474
AciI CCGC 3 cut(s) 376, 472, 600
AclWI GGATC 1 cut(s) 707
AcsI RAATTY 1 cut(s) 613
AcuI CTGAAG 1 cut(s) 87
AfaI GTAC 2 cut(s) 812, 834
AfiI CCNNNNNNNGG 2 cut(s) 37, 737
AjnI CCWGG 1 cut(s) 417
AjuI GAANNNNNNNTTGG 2 cut(s) 500, 532
AluBI AGCT 8 cut(s) 24, 373, 637, 735, 773, 829, 847, 914
AluI AGCT 8 cut(s) 24, 373, 637, 735, 773, 829, 847, 914
Alw21I GWGCWC 1 cut(s) 724
Alw26I GTCTC 1 cut(s) 562
AlwI GGATC 1 cut(s) 707
Ama87I CYCGRG 1 cut(s) 736
ApeKI GCWGC 5 cut(s) 41, 373, 443, 634, 911
ApoI RAATTY 1 cut(s) 613
AspLEI GCGC 2 cut(s) 343, 476
AspS9I GGNCC 1 cut(s) 758
AsuHPI GGTGA 2 cut(s) 89, 220
AsuNHI GCTAGC 1 cut(s) 847
AvaI CYCGRG 1 cut(s) 736
AvaII GGWCC 1 cut(s) 758
AxyI CCTNAGG 1 cut(s) 449
BauI CACGAG 1 cut(s) 717
Bbv12I GWGCWC 1 cut(s) 724
BbvI GCAGC 5 cut(s) 53, 360, 455, 646, 923
BccI CCATC 3 cut(s) 295, 358, 661
BciT130I CCWGG 1 cut(s) 419
BclI TGATCA 1 cut(s) 319
BcoDI GTCTC 1 cut(s) 562
BfaI CTAG 4 cut(s) 306, 624, 648, 848
BfmI CTRYAG 1 cut(s) 774
BfuAI ACCTGC 2 cut(s) 65, 196
BglI GCCNNNNNGGC 1 cut(s) 857
BisI GCNGC 5 cut(s) 42, 374, 444, 635, 912
BlsI GCNGC 5 cut(s) 43, 375, 445, 636, 913
Bme1390I CCNGG 1 cut(s) 419
Bme18I GGWCC 1 cut(s) 758
BmeT110I CYCGRG 1 cut(s) 736
BmgT120I GGNCC 1 cut(s) 758
BmiI GGNNCC 1 cut(s) 818
BmrFI CCNGG 1 cut(s) 419
BmsI GCATC 2 cut(s) 262, 530
BmtI GCTAGC 1 cut(s) 851
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 737
Bse1I ACTGG 2 cut(s) 142, 603
Bse21I CCTNAGG 1 cut(s) 449
BseBI CCWGG 1 cut(s) 419
BseLI CCNNNNNNNGG 2 cut(s) 37, 737
BseMII CTCAG 2 cut(s) 39, 177
BseNI ACTGG 2 cut(s) 142, 603
BseXI GCAGC 5 cut(s) 53, 360, 455, 646, 923
Bsh1236I CGCG 1 cut(s) 474
BsiHKAI GWGCWC 1 cut(s) 724
BsiHKCI CYCGRG 1 cut(s) 736
BslFI GGGAC 1 cut(s) 487
BslI CCNNNNNNNGG 2 cut(s) 37, 737
BsmAI GTCTC 1 cut(s) 562
BsmFI GGGAC 1 cut(s) 487
BsoBI CYCGRG 1 cut(s) 736
Bsp1286I GDGCHC 1 cut(s) 724
Bsp1407I TGTACA 1 cut(s) 832
Bsp143I GATC 4 cut(s) 252, 319, 495, 712
BspACI CCGC 3 cut(s) 376, 472, 600
BspCNI CTCAG 2 cut(s) 38, 178
BspFNI CGCG 1 cut(s) 474
BspLI GGNNCC 1 cut(s) 818
BspMI ACCTGC 2 cut(s) 65, 196
BspOI GCTAGC 1 cut(s) 851
BspPI GGATC 1 cut(s) 707
BsrGI TGTACA 1 cut(s) 832
BsrI ACTGG 2 cut(s) 142, 603
BssMI GATC 4 cut(s) 252, 319, 495, 712
BssSI CACGAG 1 cut(s) 717
Bst2BI CACGAG 1 cut(s) 717
Bst2UI CCWGG 1 cut(s) 419
Bst4CI ACNGT 2 cut(s) 238, 655
BstAUI TGTACA 1 cut(s) 832
BstC8I GCNNGC 4 cut(s) 639, 821, 849, 916
BstDEI CTNAG 4 cut(s) 25, 186, 360, 449
BstFNI CGCG 1 cut(s) 474
BstHHI GCGC 2 cut(s) 343, 476
BstKTI GATC 4 cut(s) 255, 322, 498, 715
BstMAI GTCTC 1 cut(s) 562
BstMBI GATC 4 cut(s) 252, 319, 495, 712
BstMWI GCNNNNNNNGC 5 cut(s) 599, 741, 835, 844, 857
BstNI CCWGG 1 cut(s) 419
BstNSI RCATGY 1 cut(s) 864
BstSCI CCNGG 1 cut(s) 417
BstSFI CTRYAG 1 cut(s) 774
BstUI CGCG 1 cut(s) 474
BstV1I GCAGC 5 cut(s) 53, 360, 455, 646, 923
Bsu36I CCTNAGG 1 cut(s) 449
BtsI GCAGTG 1 cut(s) 177
BtsIMutI CAGTG 3 cut(s) 177, 610, 660
BveI ACCTGC 2 cut(s) 65, 196
Cac8I GCNNGC 4 cut(s) 639, 821, 849, 916
CfoI GCGC 2 cut(s) 343, 476
Cfr13I GGNCC 1 cut(s) 758
CseI GACGC 1 cut(s) 827
Csp6I GTAC 2 cut(s) 811, 833
CviAII CATG 4 cut(s) 298, 388, 784, 861
CviQI GTAC 2 cut(s) 811, 833
DdeI CTNAG 4 cut(s) 25, 186, 360, 449
DpnI GATC 4 cut(s) 254, 321, 497, 714
DpnII GATC 4 cut(s) 252, 319, 495, 712
DraI TTTAAA 1 cut(s) 753
Eco47I GGWCC 1 cut(s) 758
Eco57I CTGAAG 1 cut(s) 87
Eco81I CCTNAGG 1 cut(s) 449
Eco88I CYCGRG 1 cut(s) 736
EcoO109I RGGNCCY 1 cut(s) 758
EcoRII CCWGG 1 cut(s) 417
FaeI CATG 4 cut(s) 301, 391, 787, 864
FalI AAGNNNNNCTT 2 cut(s) 432, 464
FaqI GGGAC 1 cut(s) 487
FatI CATG 4 cut(s) 297, 387, 783, 860
FauI CCCGC 1 cut(s) 479
FbaI TGATCA 1 cut(s) 319
Fnu4HI GCNGC 5 cut(s) 42, 374, 444, 635, 912
Fsp4HI GCNGC 5 cut(s) 42, 374, 444, 635, 912
FspBI CTAG 4 cut(s) 306, 624, 648, 848
GlaI GCGC 2 cut(s) 342, 475
GluI GCNGC 5 cut(s) 42, 374, 444, 635, 912
HgaI GACGC 1 cut(s) 827
HhaI GCGC 2 cut(s) 343, 476
Hin1II CATG 4 cut(s) 301, 391, 787, 864
Hin6I GCGC 2 cut(s) 341, 474
HinP1I GCGC 2 cut(s) 341, 474
HincII GTYRAC 2 cut(s) 192, 842
HindII GTYRAC 2 cut(s) 192, 842
HinfI GANTC 3 cut(s) 570, 695, 940
HphI GGTGA 2 cut(s) 89, 220
Hpy166II GTNNAC 3 cut(s) 175, 192, 842
Hpy188I TCNGA 3 cut(s) 28, 406, 931
Hpy188III TCNNGA 3 cut(s) 65, 686, 738
Hpy8I GTNNAC 3 cut(s) 175, 192, 842
HpyAV CCTTC 2 cut(s) 103, 126
HpyCH4III ACNGT 2 cut(s) 238, 655
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 3 cut(s) 197, 233, 823
HpyF10VI GCNNNNNNNGC 5 cut(s) 599, 741, 835, 844, 857
HpyF3I CTNAG 4 cut(s) 25, 186, 360, 449
HpySE526I ACGT 1 cut(s) 114
Hsp92II CATG 4 cut(s) 301, 391, 787, 864
HspAI GCGC 2 cut(s) 341, 474
Ksp22I TGATCA 1 cut(s) 319
Kzo9I GATC 4 cut(s) 252, 319, 495, 712
LmnI GCTCC 3 cut(s) 727, 816, 908
Lsp1109I GCAGC 5 cut(s) 53, 360, 455, 646, 923
LweI GCATC 2 cut(s) 262, 530
MaeI CTAG 4 cut(s) 306, 624, 648, 848
MaeII ACGT 1 cut(s) 114
MaeIII GTNAC 1 cut(s) 595
MalI GATC 4 cut(s) 254, 321, 497, 714
MboI GATC 4 cut(s) 252, 319, 495, 712
MboII GAAGA 2 cut(s) 502, 505
MfeI CAATTG 1 cut(s) 92
MhlI GDGCHC 1 cut(s) 724
MluCI AATT 5 cut(s) 92, 431, 529, 585, 613
MlyI GAGTC 2 cut(s) 564, 934
MseI TTAA 4 cut(s) 345, 414, 644, 752
MspA1I CMGCKG 1 cut(s) 637
MspR9I CCNGG 1 cut(s) 419
MunI CAATTG 1 cut(s) 92
MvaI CCWGG 1 cut(s) 419
MvnI CGCG 1 cut(s) 474
MwoI GCNNNNNNNGC 5 cut(s) 599, 741, 835, 844, 857
NdeII GATC 4 cut(s) 252, 319, 495, 712
NheI GCTAGC 1 cut(s) 847
NlaIII CATG 4 cut(s) 301, 391, 787, 864
NlaIV GGNNCC 1 cut(s) 818
NmuCI GTSAC 1 cut(s) 595
NspI RCATGY 1 cut(s) 864
PaqCI CACCTGC 2 cut(s) 65, 196
PfeI GAWTC 1 cut(s) 695
PkrI GCNGC 5 cut(s) 43, 375, 445, 636, 913
PleI GAGTC 2 cut(s) 564, 934
PpsI GAGTC 2 cut(s) 564, 934
PpuMI RGGWCCY 1 cut(s) 758
Psp5II RGGWCCY 1 cut(s) 758
Psp6I CCWGG 1 cut(s) 417
PspGI CCWGG 1 cut(s) 417
PspN4I GGNNCC 1 cut(s) 818
PspPI GGNCC 1 cut(s) 758
PspPPI RGGWCCY 1 cut(s) 758
PvuII CAGCTG 1 cut(s) 637
RsaI GTAC 2 cut(s) 812, 834
RsaNI GTAC 2 cut(s) 811, 833
SaqAI TTAA 4 cut(s) 345, 414, 644, 752
SatI GCNGC 5 cut(s) 42, 374, 444, 635, 912
Sau3AI GATC 4 cut(s) 252, 319, 495, 712
Sau96I GGNCC 1 cut(s) 758
SchI GAGTC 2 cut(s) 564, 934
ScrFI CCNGG 1 cut(s) 419
SduI GDGCHC 1 cut(s) 724
SfaNI GCATC 2 cut(s) 262, 530
SfcI CTRYAG 1 cut(s) 774
SinI GGWCC 1 cut(s) 758
Sse9I AATT 5 cut(s) 92, 431, 529, 585, 613
SsiI CCGC 3 cut(s) 376, 472, 600
SspI AATATT 1 cut(s) 229
SspMI CTAG 4 cut(s) 306, 624, 648, 848
StyD4I CCNGG 1 cut(s) 417
TaaI ACNGT 2 cut(s) 238, 655
TaiI ACGT 1 cut(s) 117
TaqI TCGA 1 cut(s) 429
TaqII GACCGA 1 cut(s) 39
TasI AATT 5 cut(s) 92, 431, 529, 585, 613
TatI WGTACW 1 cut(s) 832
TfiI GAWTC 1 cut(s) 695
Tru1I TTAA 4 cut(s) 345, 414, 644, 752
Tru9I TTAA 4 cut(s) 345, 414, 644, 752
TscAI CASTG 3 cut(s) 177, 610, 660
TseFI GTSAC 1 cut(s) 595
TseI GCWGC 5 cut(s) 41, 373, 443, 634, 911
Tsp45I GTSAC 1 cut(s) 595
TspDTI ATGAA 3 cut(s) 17, 390, 772
TspRI CASTG 3 cut(s) 177, 610, 660
VpaK11BI GGWCC 1 cut(s) 758
XapI RAATTY 1 cut(s) 613
XceI RCATGY 1 cut(s) 864
XspI CTAG 4 cut(s) 306, 624, 648, 848
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.