Rh6BG246900

Belongs to the STXBP unc-18 SEC1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0005697
Physical Location & Seq
Reverse (-)
45854117 .. 45854840
724 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG246900.1

Sequence Viewer

Length: 273 bp
ATGGTTGGTGGTGGTAATTATGTGGAGTACGGGAGCCTGCAAGAGCTTGTACAGCGTCAACAGCCTACGAGGCATGTTATCTATGGAACAACAGAAATACTCACAGGAGAGGAGTACTTTGTGGAGCAGCTTGCTATTTTGGGCCAGAAAATGGGATTCGGTGGTGCTCCTGTTGCTGCTCCAACTCACCGAAAGAAAATGATTATGAAGCTAAGAAACCGTGGGAATGAAAATGTCATGAGCATGGATATCGACATTAATGTAGACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sec1

Protein Analysis

90

Amino Acids

10.06

Weight (kDa)

6.06

Isoelectric Point (pI)

52.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec1 PF00995 1 - 39 2.8e-08 Sec1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 151
AccI GTMKAC 1 cut(s) 264
AfaI GTAC 3 cut(s) 29, 51, 116
AfiI CCNNNNNNNGG 1 cut(s) 151
AluBI AGCT 3 cut(s) 46, 130, 211
AluI AGCT 3 cut(s) 46, 130, 211
Alw21I GWGCWC 1 cut(s) 169
AoxI GGCC 1 cut(s) 142
ApeKI GCWGC 2 cut(s) 127, 176
AseI ATTAAT 1 cut(s) 258
AspS9I GGNCC 1 cut(s) 142
AsuHPI GGTGA 1 cut(s) 179
Bbv12I GWGCWC 1 cut(s) 169
BbvI GCAGC 2 cut(s) 139, 163
BcgI CGANNNNNNTGC 2 cut(s) 232, 266
BglI GCCNNNNNGGC 1 cut(s) 70
BisI GCNGC 2 cut(s) 128, 177
BlsI GCNGC 2 cut(s) 129, 178
BmcAI AGTACT 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 142
BmiI GGNNCC 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 220
Bsc4I CCNNNNNNNGG 1 cut(s) 151
BseDI CCNNGG 1 cut(s) 220
BseLI CCNNNNNNNGG 1 cut(s) 151
BseRI GAGGAG 1 cut(s) 125
BseXI GCAGC 2 cut(s) 139, 163
BshFI GGCC 1 cut(s) 144
BsiHKAI GWGCWC 1 cut(s) 169
BslI CCNNNNNNNGG 1 cut(s) 151
BsnI GGCC 1 cut(s) 144
Bsp1286I GDGCHC 1 cut(s) 169
Bsp1407I TGTACA 1 cut(s) 49
BspANI GGCC 1 cut(s) 144
BspHI TCATGA 1 cut(s) 237
BspLI GGNNCC 1 cut(s) 35
BsrGI TGTACA 1 cut(s) 49
BssECI CCNNGG 1 cut(s) 220
Bst4CI ACNGT 1 cut(s) 221
BstAUI TGTACA 1 cut(s) 49
BstC8I GCNNGC 2 cut(s) 38, 132
BstDEI CTNAG 1 cut(s) 212
BstDSI CCRYGG 1 cut(s) 220
BstMWI GCNNNNNNNGC 4 cut(s) 52, 61, 70, 173
BstNSI RCATGY 1 cut(s) 77
BstV1I GCAGC 2 cut(s) 139, 163
BsuRI GGCC 1 cut(s) 144
BtgI CCRYGG 1 cut(s) 220
Cac8I GCNNGC 2 cut(s) 38, 132
CciI TCATGA 1 cut(s) 237
Cfr13I GGNCC 1 cut(s) 142
CseI GACGC 1 cut(s) 44
Csp6I GTAC 3 cut(s) 28, 50, 115
CviAII CATG 3 cut(s) 74, 238, 244
CviJI RGCY 6 cut(s) 36, 46, 64, 130, 144, 211
CviKI_1 RGCY 6 cut(s) 36, 46, 64, 130, 144, 211
CviQI GTAC 3 cut(s) 28, 50, 115
DdeI CTNAG 1 cut(s) 212
Eco32I GATATC 1 cut(s) 250
EcoRV GATATC 1 cut(s) 250
FaeI CATG 3 cut(s) 77, 241, 247
FaiI YATR 6 cut(s) 21, 75, 84, 206, 239, 245
FatI CATG 3 cut(s) 73, 237, 243
FblI GTMKAC 1 cut(s) 264
Fnu4HI GCNGC 2 cut(s) 128, 177
Fsp4HI GCNGC 2 cut(s) 128, 177
GluI GCNGC 2 cut(s) 128, 177
HaeIII GGCC 1 cut(s) 144
HgaI GACGC 1 cut(s) 44
Hin1II CATG 3 cut(s) 77, 241, 247
HincII GTYRAC 1 cut(s) 59
HindII GTYRAC 1 cut(s) 59
HinfI GANTC 1 cut(s) 156
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 2 cut(s) 59, 265
Hpy188III TCNNGA 1 cut(s) 238
Hpy8I GTNNAC 2 cut(s) 59, 265
HpyCH4III ACNGT 1 cut(s) 221
HpyCH4V TGCA 1 cut(s) 40
HpyF10VI GCNNNNNNNGC 4 cut(s) 52, 61, 70, 173
HpyF3I CTNAG 1 cut(s) 212
Hsp92II CATG 3 cut(s) 77, 241, 247
LmnI GCTCC 4 cut(s) 33, 124, 172, 184
LpnPI CCDG 4 cut(s) 50, 90, 158, 183
Lsp1109I GCAGC 2 cut(s) 139, 163
MhlI GDGCHC 1 cut(s) 169
MluCI AATT 2 cut(s) 16, 268
MmeI TCCRAC 1 cut(s) 206
MnlI CCTC 2 cut(s) 63, 103
MseI TTAA 2 cut(s) 258, 271
MslI CAYNNNNRTG 1 cut(s) 242
MwoI GCNNNNNNNGC 4 cut(s) 52, 61, 70, 173
NlaIII CATG 3 cut(s) 77, 241, 247
NlaIV GGNNCC 1 cut(s) 35
NspI RCATGY 1 cut(s) 77
PagI TCATGA 1 cut(s) 237
PfeI GAWTC 1 cut(s) 156
PflMI CCANNNNNTGG 1 cut(s) 151
PkrI GCNGC 2 cut(s) 129, 178
PshBI ATTAAT 1 cut(s) 258
PspN4I GGNNCC 1 cut(s) 35
PspPI GGNCC 1 cut(s) 142
RsaI GTAC 3 cut(s) 29, 51, 116
RsaNI GTAC 3 cut(s) 28, 50, 115
RseI CAYNNNNRTG 1 cut(s) 242
SaqAI TTAA 2 cut(s) 258, 271
SatI GCNGC 2 cut(s) 128, 177
Sau96I GGNCC 1 cut(s) 142
ScaI AGTACT 1 cut(s) 116
SduI GDGCHC 1 cut(s) 169
SetI ASST 3 cut(s) 48, 132, 213
SmiMI CAYNNNNRTG 1 cut(s) 242
Sse9I AATT 2 cut(s) 16, 268
TaaI ACNGT 1 cut(s) 221
TaqI TCGA 1 cut(s) 252
TasI AATT 2 cut(s) 16, 268
TatI WGTACW 2 cut(s) 49, 114
TfiI GAWTC 1 cut(s) 156
Tru1I TTAA 2 cut(s) 258, 271
Tru9I TTAA 2 cut(s) 258, 271
TseI GCWGC 2 cut(s) 127, 176
TspDTI ATGAA 2 cut(s) 221, 243
Van91I CCANNNNNTGG 1 cut(s) 151
VspI ATTAAT 1 cut(s) 258
XceI RCATGY 1 cut(s) 77
XmiI GTMKAC 1 cut(s) 264
ZrmI AGTACT 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.