RchiOBHm_Chr6g0280551

Belongs to the STXBP unc-18 SEC1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0005697
Physical Location & Seq
Reverse (-)
43961433 .. 43961762
330 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25157

Sequence Viewer

Length: 330 bp
ATGGAGGGAAAGCCAAATCCAGAAGTTGATTCTTACCTTATGTTTGATCCTCGTGCTCCGGAGTCAAGCTCGGGAAGCAACCATTTAAAAGGACCTTTTAAGGAGGCTATAGTGCTCATGGTTGGTGGTGGTAATTATGTGGAGTACGGGAGCCTGCAAGAGCTTGTACAGCGTCAACAGCCTACGAGGCATGTTATCTATGGAACAACAGAAATACTCACAGGAGAGGAGTGTACTTTGTGGAGCAGCTTGCTATTTTGGGCCAGAAAATGGGATTGGGTGGTGCTCCTGTTGCTGCTCCAACTCTGTGATATTGGTCCTGCAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sec1

Protein Analysis

109

Amino Acids

12.27

Weight (kDa)

4.85

Isoelectric Point (pI)

49.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec1 PF00995 16 - 77 3.3e-12 Sec1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 270
AccIII TCCGGA 1 cut(s) 58
AclWI GGATC 1 cut(s) 41
AfaI GTAC 3 cut(s) 146, 168, 235
AfiI CCNNNNNNNGG 1 cut(s) 270
AjuI GAANNNNNNNTTGG 2 cut(s) 259, 291
AluBI AGCT 3 cut(s) 69, 163, 249
AluI AGCT 3 cut(s) 69, 163, 249
Alw21I GWGCWC 3 cut(s) 58, 117, 288
AlwI GGATC 1 cut(s) 41
Ama87I CYCGRG 1 cut(s) 70
Aor13HI TCCGGA 1 cut(s) 58
AoxI GGCC 1 cut(s) 261
ApeKI GCWGC 2 cut(s) 246, 295
AspS9I GGNCC 3 cut(s) 92, 261, 317
AvaI CYCGRG 1 cut(s) 70
AvaII GGWCC 2 cut(s) 92, 317
BauI CACGAG 1 cut(s) 51
Bbv12I GWGCWC 3 cut(s) 58, 117, 288
BbvI GCAGC 2 cut(s) 258, 282
BfmI CTRYAG 1 cut(s) 108
BglI GCCNNNNNGGC 1 cut(s) 187
BisI GCNGC 2 cut(s) 247, 296
BlsI GCNGC 2 cut(s) 248, 297
Bme18I GGWCC 2 cut(s) 92, 317
BmeT110I CYCGRG 1 cut(s) 70
BmgT120I GGNCC 3 cut(s) 92, 261, 317
BmiI GGNNCC 1 cut(s) 152
BplI GAGNNNNNCTC 2 cut(s) 53, 85
BsaWI WCCGGW 1 cut(s) 58
Bsc4I CCNNNNNNNGG 1 cut(s) 270
BseAI TCCGGA 1 cut(s) 58
BseLI CCNNNNNNNGG 1 cut(s) 270
BseRI GAGGAG 1 cut(s) 242
BseXI GCAGC 2 cut(s) 258, 282
BshFI GGCC 1 cut(s) 263
BsiHKAI GWGCWC 3 cut(s) 58, 117, 288
BsiHKCI CYCGRG 1 cut(s) 70
BsiSI CCGG 1 cut(s) 59
BslI CCNNNNNNNGG 1 cut(s) 270
BsnI GGCC 1 cut(s) 263
BsoBI CYCGRG 1 cut(s) 70
Bsp1286I GDGCHC 3 cut(s) 58, 117, 288
Bsp13I TCCGGA 1 cut(s) 58
Bsp1407I TGTACA 1 cut(s) 166
Bsp143I GATC 1 cut(s) 46
BspANI GGCC 1 cut(s) 263
BspEI TCCGGA 1 cut(s) 58
BspLI GGNNCC 1 cut(s) 152
BspPI GGATC 1 cut(s) 41
BsrGI TGTACA 1 cut(s) 166
BssMI GATC 1 cut(s) 46
BssSI CACGAG 1 cut(s) 51
Bst2BI CACGAG 1 cut(s) 51
BstAUI TGTACA 1 cut(s) 166
BstC8I GCNNGC 2 cut(s) 155, 251
BstKTI GATC 1 cut(s) 49
BstMBI GATC 1 cut(s) 46
BstMWI GCNNNNNNNGC 5 cut(s) 75, 169, 178, 187, 292
BstNSI RCATGY 1 cut(s) 194
BstSFI CTRYAG 1 cut(s) 108
BstV1I GCAGC 2 cut(s) 258, 282
BsuRI GGCC 1 cut(s) 263
Cac8I GCNNGC 2 cut(s) 155, 251
Cfr13I GGNCC 3 cut(s) 92, 261, 317
CseI GACGC 1 cut(s) 161
Csp6I GTAC 3 cut(s) 145, 167, 234
CviAII CATG 2 cut(s) 118, 191
CviJI RGCY 8 cut(s) 13, 69, 107, 153, 163, 181, 249, 263
CviKI_1 RGCY 8 cut(s) 13, 69, 107, 153, 163, 181, 249, 263
CviQI GTAC 3 cut(s) 145, 167, 234
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
DraI TTTAAA 1 cut(s) 87
Eco47I GGWCC 2 cut(s) 92, 317
Eco88I CYCGRG 1 cut(s) 70
EcoO109I RGGNCCY 1 cut(s) 92
FaeI CATG 2 cut(s) 121, 194
FaiI YATR 6 cut(s) 41, 110, 119, 138, 192, 201
FatI CATG 2 cut(s) 117, 190
Fnu4HI GCNGC 2 cut(s) 247, 296
Fsp4HI GCNGC 2 cut(s) 247, 296
GluI GCNGC 2 cut(s) 247, 296
HaeIII GGCC 1 cut(s) 263
HapII CCGG 1 cut(s) 59
HgaI GACGC 1 cut(s) 161
Hin1II CATG 2 cut(s) 121, 194
HincII GTYRAC 1 cut(s) 176
HindII GTYRAC 1 cut(s) 176
HinfI GANTC 2 cut(s) 29, 62
HpaII CCGG 1 cut(s) 59
Hpy166II GTNNAC 2 cut(s) 176, 234
Hpy188III TCNNGA 3 cut(s) 20, 59, 72
Hpy8I GTNNAC 2 cut(s) 176, 234
HpyCH4V TGCA 2 cut(s) 157, 323
HpyF10VI GCNNNNNNNGC 5 cut(s) 75, 169, 178, 187, 292
Hsp92II CATG 2 cut(s) 121, 194
Kpn2I TCCGGA 1 cut(s) 58
Kzo9I GATC 1 cut(s) 46
LmnI GCTCC 5 cut(s) 61, 150, 243, 291, 303
LpnPI CCDG 6 cut(s) 33, 72, 167, 207, 277, 302
Lsp1109I GCAGC 2 cut(s) 258, 282
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MhlI GDGCHC 3 cut(s) 58, 117, 288
MluCI AATT 2 cut(s) 133, 324
MlyI GAGTC 1 cut(s) 71
MmeI TCCRAC 1 cut(s) 325
MnlI CCTC 4 cut(s) 60, 97, 180, 220
MroI TCCGGA 1 cut(s) 58
MseI TTAA 2 cut(s) 86, 99
MspI CCGG 1 cut(s) 59
MwoI GCNNNNNNNGC 5 cut(s) 75, 169, 178, 187, 292
NdeII GATC 1 cut(s) 46
NlaIII CATG 2 cut(s) 121, 194
NlaIV GGNNCC 1 cut(s) 152
NspI RCATGY 1 cut(s) 194
PfeI GAWTC 1 cut(s) 29
PflMI CCANNNNNTGG 1 cut(s) 270
PkrI GCNGC 2 cut(s) 248, 297
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
PpuMI RGGWCCY 1 cut(s) 92
Psp5II RGGWCCY 1 cut(s) 92
PspN4I GGNNCC 1 cut(s) 152
PspPI GGNCC 3 cut(s) 92, 261, 317
PspPPI RGGWCCY 1 cut(s) 92
RsaI GTAC 3 cut(s) 146, 168, 235
RsaNI GTAC 3 cut(s) 145, 167, 234
SaqAI TTAA 2 cut(s) 86, 99
SatI GCNGC 2 cut(s) 247, 296
Sau3AI GATC 1 cut(s) 46
Sau96I GGNCC 3 cut(s) 92, 261, 317
SchI GAGTC 1 cut(s) 71
SduI GDGCHC 3 cut(s) 58, 117, 288
SetI ASST 5 cut(s) 39, 71, 97, 165, 251
SfcI CTRYAG 1 cut(s) 108
SinI GGWCC 2 cut(s) 92, 317
Sse9I AATT 2 cut(s) 133, 324
TasI AATT 2 cut(s) 133, 324
TatI WGTACW 2 cut(s) 166, 233
TfiI GAWTC 1 cut(s) 29
Tru1I TTAA 2 cut(s) 86, 99
Tru9I TTAA 2 cut(s) 86, 99
TseI GCWGC 2 cut(s) 246, 295
Van91I CCANNNNNTGG 1 cut(s) 270
VpaK11BI GGWCC 2 cut(s) 92, 317
XceI RCATGY 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.