Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015818.1

Orthogroup ID

OG0005697

Physical Location & Seq

Genomic Coordinates Reverse (-)

24580 .. 24906

Gene Structure 327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015818.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

atggagggaaagacaaatccagaagttgattcttacctcatgtttgatcctcgtgctccggagtcaagctcgggaagcaaccatttaaaaggaacttttaaggaggctgtagtgttcatggttggtggtggtaattatgtggagtacgggagccagcaagagcttgtacagcgtcaacagcctatgaggcatgttatctatggaacaacagaaatactcacaggagaggagtactttgtggagcagcttgctattttgggcagaaaatgggattgggtggtgctcctgttgctgctccaactcagtgatatcggtcctgcaatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec1

Protein Analysis

108

Amino Acids

12.15

Weight (kDa)

4.74

Isoelectric Point (pI)

39.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17980 AT4G31740
fragaria_vesca	FvH4_2g16530 FvH4_5g21350
malus_domestica	MD05G1133700.v1.1 MD10G1138700.v1.1
prunus_persica	Prupe.8G177500_v2.0.a1
pyrus_communis	pycom05g13050 pycom10g11790
rosa_chinensis	RchiOBHm_Chr6g0280551 RchiOBHm_Chr7g0225341
rosa_laevigata	RLG00000001829 RLG00000013055
rosa_multiflora	Rmu_co8087732.1_g000001 Rmu_sc0000259.1_g000036 Rmu_sc0015818.1_g000006
rosa_roxburghii	Rroxscaffold_3G00233920
rosa_rugosa	Rorug07G0228500
rosa_samantha	Rh6AG244500 Rh6BG246900 Rh6CG248300 Rh6CG248400 Rh6DG239700 Rh7AG374600 Rh7BG363500 Rh7CG393100 Rh7DG374300
rosa_wichuraiana	Rw7G031590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	58
AclWI	GGATC	1 cut(s)	41
AfaI	GTAC	3 cut(s)	146, 168, 233
AjuI	GAANNNNNNNTTGG	2 cut(s)	256, 288
AluBI	AGCT	3 cut(s)	69, 163, 247
AluI	AGCT	3 cut(s)	69, 163, 247
Alw21I	GWGCWC	2 cut(s)	58, 285
AlwI	GGATC	1 cut(s)	41
Ama87I	CYCGRG	1 cut(s)	70
Aor13HI	TCCGGA	1 cut(s)	58
ApeKI	GCWGC	2 cut(s)	244, 292
AspS9I	GGNCC	1 cut(s)	314
AvaI	CYCGRG	1 cut(s)	70
AvaII	GGWCC	1 cut(s)	314
BauI	CACGAG	1 cut(s)	51
Bbv12I	GWGCWC	2 cut(s)	58, 285
BbvI	GCAGC	2 cut(s)	256, 279
BfmI	CTRYAG	1 cut(s)	108
BglI	GCCNNNNNGGC	1 cut(s)	187
BisI	GCNGC	2 cut(s)	245, 293
BlsI	GCNGC	2 cut(s)	246, 294
BmcAI	AGTACT	1 cut(s)	233
Bme18I	GGWCC	1 cut(s)	314
BmeT110I	CYCGRG	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	314
BmiI	GGNNCC	1 cut(s)	152
BplI	GAGNNNNNCTC	2 cut(s)	53, 85
BsaWI	WCCGGW	1 cut(s)	58
BseAI	TCCGGA	1 cut(s)	58
BseMII	CTCAG	1 cut(s)	316
BseRI	GAGGAG	1 cut(s)	242
BseXI	GCAGC	2 cut(s)	256, 279
BsiHKAI	GWGCWC	2 cut(s)	58, 285
BsiHKCI	CYCGRG	1 cut(s)	70
BsiSI	CCGG	1 cut(s)	59
BsoBI	CYCGRG	1 cut(s)	70
Bsp1286I	GDGCHC	2 cut(s)	58, 285
Bsp13I	TCCGGA	1 cut(s)	58
Bsp1407I	TGTACA	1 cut(s)	166
Bsp143I	GATC	1 cut(s)	46
BspCNI	CTCAG	1 cut(s)	315
BspEI	TCCGGA	1 cut(s)	58
BspLI	GGNNCC	1 cut(s)	152
BspPI	GGATC	1 cut(s)	41
BsrGI	TGTACA	1 cut(s)	166
BssMI	GATC	1 cut(s)	46
BssSI	CACGAG	1 cut(s)	51
Bst2BI	CACGAG	1 cut(s)	51
BstAUI	TGTACA	1 cut(s)	166
BstC8I	GCNNGC	2 cut(s)	155, 249
BstDEI	CTNAG	1 cut(s)	302
BstKTI	GATC	1 cut(s)	49
BstMBI	GATC	1 cut(s)	46
BstMWI	GCNNNNNNNGC	5 cut(s)	75, 169, 178, 187, 289
BstNSI	RCATGY	1 cut(s)	194
BstSFI	CTRYAG	1 cut(s)	108
BstV1I	GCAGC	2 cut(s)	256, 279
BtsIMutI	CAGTG	1 cut(s)	310
Cac8I	GCNNGC	2 cut(s)	155, 249
Cfr13I	GGNCC	1 cut(s)	314
CseI	GACGC	1 cut(s)	161
Csp6I	GTAC	3 cut(s)	145, 167, 232
CviAII	CATG	3 cut(s)	40, 118, 191
CviJI	RGCY	6 cut(s)	69, 107, 153, 163, 181, 247
CviKI_1	RGCY	6 cut(s)	69, 107, 153, 163, 181, 247
CviQI	GTAC	3 cut(s)	145, 167, 232
DdeI	CTNAG	1 cut(s)	302
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
DraI	TTTAAA	1 cut(s)	87
Eco32I	GATATC	1 cut(s)	310
Eco47I	GGWCC	1 cut(s)	314
Eco88I	CYCGRG	1 cut(s)	70
EcoRV	GATATC	1 cut(s)	310
FaeI	CATG	3 cut(s)	43, 121, 194
FaiI	YATR	6 cut(s)	41, 119, 138, 185, 192, 201
FatI	CATG	3 cut(s)	39, 117, 190
Fnu4HI	GCNGC	2 cut(s)	245, 293
Fsp4HI	GCNGC	2 cut(s)	245, 293
GluI	GCNGC	2 cut(s)	245, 293
HapII	CCGG	1 cut(s)	59
HgaI	GACGC	1 cut(s)	161
Hin1II	CATG	3 cut(s)	43, 121, 194
HincII	GTYRAC	1 cut(s)	176
HindII	GTYRAC	1 cut(s)	176
HinfI	GANTC	2 cut(s)	29, 62
HpaII	CCGG	1 cut(s)	59
Hpy166II	GTNNAC	1 cut(s)	176
Hpy188III	TCNNGA	3 cut(s)	20, 59, 72
Hpy8I	GTNNAC	1 cut(s)	176
HpyCH4V	TGCA	1 cut(s)	320
HpyF10VI	GCNNNNNNNGC	5 cut(s)	75, 169, 178, 187, 289
HpyF3I	CTNAG	1 cut(s)	302
Hsp92II	CATG	3 cut(s)	43, 121, 194
Kpn2I	TCCGGA	1 cut(s)	58
Kzo9I	GATC	1 cut(s)	46
LmnI	GCTCC	5 cut(s)	61, 150, 241, 288, 300
LpnPI	CCDG	5 cut(s)	33, 72, 167, 207, 299
Lsp1109I	GCAGC	2 cut(s)	256, 279
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MhlI	GDGCHC	2 cut(s)	58, 285
MluCI	AATT	2 cut(s)	133, 321
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	1 cut(s)	322
MnlI	CCTC	5 cut(s)	47, 60, 97, 180, 220
MroI	TCCGGA	1 cut(s)	58
MseI	TTAA	2 cut(s)	86, 99
MspI	CCGG	1 cut(s)	59
MwoI	GCNNNNNNNGC	5 cut(s)	75, 169, 178, 187, 289
NdeII	GATC	1 cut(s)	46
NlaIII	CATG	3 cut(s)	43, 121, 194
NlaIV	GGNNCC	1 cut(s)	152
NspI	RCATGY	1 cut(s)	194
PfeI	GAWTC	1 cut(s)	29
PkrI	GCNGC	2 cut(s)	246, 294
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
PspN4I	GGNNCC	1 cut(s)	152
PspPI	GGNCC	1 cut(s)	314
RsaI	GTAC	3 cut(s)	146, 168, 233
RsaNI	GTAC	3 cut(s)	145, 167, 232
SaqAI	TTAA	2 cut(s)	86, 99
SatI	GCNGC	2 cut(s)	245, 293
Sau3AI	GATC	1 cut(s)	46
Sau96I	GGNCC	1 cut(s)	314
ScaI	AGTACT	1 cut(s)	233
SchI	GAGTC	1 cut(s)	71
SduI	GDGCHC	2 cut(s)	58, 285
SetI	ASST	4 cut(s)	39, 71, 165, 249
SfcI	CTRYAG	1 cut(s)	108
SinI	GGWCC	1 cut(s)	314
Sse9I	AATT	2 cut(s)	133, 321
TaqII	GACCGA	1 cut(s)	302
TasI	AATT	2 cut(s)	133, 321
TatI	WGTACW	2 cut(s)	166, 231
TfiI	GAWTC	1 cut(s)	29
Tru1I	TTAA	2 cut(s)	86, 99
Tru9I	TTAA	2 cut(s)	86, 99
TscAI	CASTG	1 cut(s)	310
TseI	GCWGC	2 cut(s)	244, 292
TspDTI	ATGAA	1 cut(s)	106
TspRI	CASTG	1 cut(s)	310
VpaK11BI	GGWCC	1 cut(s)	314
XceI	RCATGY	1 cut(s)	194
ZrmI	AGTACT	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.