RLG00000013055

Belongs to the STXBP unc-18 SEC1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0005697
Physical Location & Seq
Forward (+)
25391550 .. 25392591
1042 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013055

Sequence Viewer

Length: 315 bp
ATGAGAGATGAGAGAAGAGAGACGAGAGAAGTTTCTGATAATGGTCTTGTAAGTCAAGCTCTGGAAGCAACCATTTTAAAAGGACCTTTAAAGGAGGCTATAGTGTTCATGGTTGGTGGTGGTAATTATGTGGAGTACGGGACCCTGCAAGAGCTTGTACAGTGTCAACAGCGTACGAGGCATGTTATCTATGGAACAACAGAAATACTCACAGGAGAGGACTCTGTGGAGCAGCTTGCTATTTTGGGCCAGAAAAAGGGATTGGTGGTGCTCCTGTTGCTGCTCCAACTCGGTGATATTGGTCCTGCAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sec1

Protein Analysis

105

Amino Acids

11.41

Weight (kDa)

4.91

Isoelectric Point (pI)

33.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec1 PF00995 31 - 77 9.9e-12 Sec1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 3 cut(s) 137, 159, 175
AfiI CCNNNNNNNGG 1 cut(s) 256
AjuI GAANNNNNNNTTGG 2 cut(s) 245, 277
AluBI AGCT 3 cut(s) 59, 154, 235
AluI AGCT 3 cut(s) 59, 154, 235
Alw21I GWGCWC 1 cut(s) 273
Alw26I GTCTC 1 cut(s) 14
AoxI GGCC 1 cut(s) 247
ApeKI GCWGC 2 cut(s) 232, 280
AspS9I GGNCC 4 cut(s) 83, 141, 247, 302
AsuHPI GGTGA 1 cut(s) 305
AvaII GGWCC 3 cut(s) 83, 141, 302
Bbv12I GWGCWC 1 cut(s) 273
BbvI GCAGC 2 cut(s) 244, 267
BcoDI GTCTC 1 cut(s) 14
BfmI CTRYAG 1 cut(s) 99
BisI GCNGC 2 cut(s) 233, 281
BlsI GCNGC 2 cut(s) 234, 282
Bme18I GGWCC 3 cut(s) 83, 141, 302
BmgT120I GGNCC 4 cut(s) 83, 141, 247, 302
BmiI GGNNCC 2 cut(s) 142, 143
Bsc4I CCNNNNNNNGG 1 cut(s) 256
BseLI CCNNNNNNNGG 1 cut(s) 256
BseXI GCAGC 2 cut(s) 244, 267
BshFI GGCC 1 cut(s) 249
BsiHKAI GWGCWC 1 cut(s) 273
BsiWI CGTACG 1 cut(s) 173
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 1 cut(s) 256
BsmAI GTCTC 1 cut(s) 14
BsmBI CGTCTC 1 cut(s) 14
BsmFI GGGAC 1 cut(s) 154
BsnI GGCC 1 cut(s) 249
Bsp1286I GDGCHC 1 cut(s) 273
Bsp1407I TGTACA 1 cut(s) 157
BspANI GGCC 1 cut(s) 249
BspLI GGNNCC 2 cut(s) 142, 143
BsrGI TGTACA 1 cut(s) 157
Bst4CI ACNGT 1 cut(s) 162
Bst6I CTCTTC 1 cut(s) 10
BstAUI TGTACA 1 cut(s) 157
BstC8I GCNNGC 1 cut(s) 237
BstMAI GTCTC 1 cut(s) 14
BstMWI GCNNNNNNNGC 3 cut(s) 65, 178, 277
BstNSI RCATGY 1 cut(s) 185
BstSFI CTRYAG 1 cut(s) 99
BstV1I GCAGC 2 cut(s) 244, 267
BsuRI GGCC 1 cut(s) 249
BtsIMutI CAGTG 1 cut(s) 167
Cac8I GCNNGC 1 cut(s) 237
Cfr13I GGNCC 4 cut(s) 83, 141, 247, 302
Csp6I GTAC 3 cut(s) 136, 158, 174
CviAII CATG 2 cut(s) 109, 182
CviJI RGCY 5 cut(s) 59, 98, 154, 235, 249
CviKI_1 RGCY 5 cut(s) 59, 98, 154, 235, 249
CviQI GTAC 3 cut(s) 136, 158, 174
DraI TTTAAA 2 cut(s) 78, 90
Eam1104I CTCTTC 1 cut(s) 10
EarI CTCTTC 1 cut(s) 10
Eco47I GGWCC 3 cut(s) 83, 141, 302
EcoO109I RGGNCCY 2 cut(s) 83, 141
Esp3I CGTCTC 1 cut(s) 14
FaeI CATG 2 cut(s) 112, 185
FaiI YATR 5 cut(s) 101, 110, 129, 183, 192
FaqI GGGAC 1 cut(s) 154
FatI CATG 2 cut(s) 108, 181
Fnu4HI GCNGC 2 cut(s) 233, 281
Fsp4HI GCNGC 2 cut(s) 233, 281
GluI GCNGC 2 cut(s) 233, 281
HaeIII GGCC 1 cut(s) 249
Hin1II CATG 2 cut(s) 112, 185
HincII GTYRAC 1 cut(s) 167
HindII GTYRAC 1 cut(s) 167
HinfI GANTC 1 cut(s) 221
HphI GGTGA 1 cut(s) 305
Hpy166II GTNNAC 1 cut(s) 167
Hpy188I TCNGA 1 cut(s) 37
Hpy188III TCNNGA 1 cut(s) 62
Hpy8I GTNNAC 1 cut(s) 167
HpyCH4III ACNGT 1 cut(s) 162
HpyCH4V TGCA 2 cut(s) 148, 308
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 178, 277
Hsp92II CATG 2 cut(s) 112, 185
KflI GGGWCCC 1 cut(s) 141
LmnI GCTCC 3 cut(s) 229, 276, 288
LpnPI CCDG 5 cut(s) 47, 158, 198, 263, 287
Lsp1109I GCAGC 2 cut(s) 244, 267
MboII GAAGA 1 cut(s) 27
MhlI GDGCHC 1 cut(s) 273
MluCI AATT 2 cut(s) 124, 309
MlyI GAGTC 1 cut(s) 215
MmeI TCCRAC 1 cut(s) 310
MnlI CCTC 3 cut(s) 88, 171, 211
MseI TTAA 2 cut(s) 77, 89
MwoI GCNNNNNNNGC 3 cut(s) 65, 178, 277
NlaIII CATG 2 cut(s) 112, 185
NlaIV GGNNCC 2 cut(s) 142, 143
NspI RCATGY 1 cut(s) 185
Pfl23II CGTACG 1 cut(s) 173
PkrI GCNGC 2 cut(s) 234, 282
PleI GAGTC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 215
PpuMI RGGWCCY 2 cut(s) 83, 141
Psp5II RGGWCCY 2 cut(s) 83, 141
PspLI CGTACG 1 cut(s) 173
PspN4I GGNNCC 2 cut(s) 142, 143
PspPI GGNCC 4 cut(s) 83, 141, 247, 302
PspPPI RGGWCCY 2 cut(s) 83, 141
RsaI GTAC 3 cut(s) 137, 159, 175
RsaNI GTAC 3 cut(s) 136, 158, 174
SaqAI TTAA 2 cut(s) 77, 89
SatI GCNGC 2 cut(s) 233, 281
Sau96I GGNCC 4 cut(s) 83, 141, 247, 302
SchI GAGTC 1 cut(s) 215
SduI GDGCHC 1 cut(s) 273
SetI ASST 4 cut(s) 61, 88, 156, 237
SfcI CTRYAG 1 cut(s) 99
SinI GGWCC 3 cut(s) 83, 141, 302
Sse9I AATT 2 cut(s) 124, 309
TaaI ACNGT 1 cut(s) 162
TasI AATT 2 cut(s) 124, 309
TatI WGTACW 1 cut(s) 157
Tru1I TTAA 2 cut(s) 77, 89
Tru9I TTAA 2 cut(s) 77, 89
TscAI CASTG 1 cut(s) 167
TseI GCWGC 2 cut(s) 232, 280
TspDTI ATGAA 1 cut(s) 97
TspRI CASTG 1 cut(s) 167
VpaK11BI GGWCC 3 cut(s) 83, 141, 302
XceI RCATGY 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.