Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8087732.1

Orthogroup ID

OG0005697

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 530

Gene Structure 529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8087732.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 529 bp

atggctagagggggcattgatcaaaaagaacttctgggtgcacttagaggaaaaggaactaagatggataaactgcgatttgctatcatgtatctcatttcatcagaaagcattaaccagggagaagtcgaattagtggaagcagccctcagggagttagaggttgatacccgtgcatttcagtatgtgaagaagatcaagtcgctgaatgtctcattggcttcagcaaattctgccagcagaagcaatatagttgattgggcagagaagctctatgggcagtcaattagtgccgtgacagcaggtgtcaaaaatctgttatctagtgataggcagttggcactaactaggacagtggaggctttgatggagggaaagccgaatccagaagttgattcttaccttatgtttgatcctcgtgctccaaagtcaagctcgggaagcagccatttaaaaggaccttttaaggaggctatagtgttcatggttggaggtggaaattatgtggagtacgggagcctgcaagagc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec1

Protein Analysis

176

Amino Acids

19.17

Weight (kDa)

7.87

Isoelectric Point (pI)

25.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17980 AT4G31740
fragaria_vesca	FvH4_2g16530 FvH4_5g21350
malus_domestica	MD05G1133700.v1.1 MD10G1138700.v1.1
prunus_persica	Prupe.8G177500_v2.0.a1
pyrus_communis	pycom05g13050 pycom10g11790
rosa_chinensis	RchiOBHm_Chr6g0280551 RchiOBHm_Chr7g0225341
rosa_laevigata	RLG00000001829 RLG00000013055
rosa_multiflora	Rmu_co8087732.1_g000001 Rmu_sc0000259.1_g000036 Rmu_sc0015818.1_g000006
rosa_roxburghii	Rroxscaffold_3G00233920
rosa_rugosa	Rorug07G0228500
rosa_samantha	Rh6AG244500 Rh6BG246900 Rh6CG248300 Rh6CG248400 Rh6DG239700 Rh7AG374600 Rh7BG363500 Rh7CG393100 Rh7DG374300
rosa_wichuraiana	Rw7G031590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	293
Acc36I	ACCTGC	1 cut(s)	293
AclWI	GGATC	1 cut(s)	407
AcsI	RAATTY	1 cut(s)	229
AcuI	CTGAAG	1 cut(s)	207
AfaI	GTAC	1 cut(s)	512
AjnI	CCWGG	1 cut(s)	117
AjuI	GAANNNNNNNTTGG	2 cut(s)	200, 232
AluBI	AGCT	2 cut(s)	271, 435
AluI	AGCT	2 cut(s)	271, 435
Alw21I	GWGCWC	2 cut(s)	43, 424
Alw26I	GTCTC	1 cut(s)	217
Alw44I	GTGCAC	1 cut(s)	39
AlwI	GGATC	1 cut(s)	407
Ama87I	CYCGRG	1 cut(s)	436
ApaLI	GTGCAC	1 cut(s)	39
ApeKI	GCWGC	2 cut(s)	143, 444
ApoI	RAATTY	1 cut(s)	229
AspS9I	GGNCC	1 cut(s)	458
AvaI	CYCGRG	1 cut(s)	436
AvaII	GGWCC	1 cut(s)	458
AxyI	CCTNAGG	1 cut(s)	149
BaeGI	GKGCMC	1 cut(s)	43
BauI	CACGAG	1 cut(s)	417
Bbv12I	GWGCWC	2 cut(s)	43, 424
BbvI	GCAGC	2 cut(s)	155, 456
BccI	CCATC	2 cut(s)	58, 361
BceAI	ACGGC	1 cut(s)	278
BciT130I	CCWGG	1 cut(s)	119
BclI	TGATCA	1 cut(s)	19
BcoDI	GTCTC	1 cut(s)	217
BfaI	CTAG	3 cut(s)	6, 324, 348
BfmI	CTRYAG	1 cut(s)	474
BfuAI	ACCTGC	1 cut(s)	293
BisI	GCNGC	2 cut(s)	144, 445
BlsI	GCNGC	2 cut(s)	145, 446
Bme1390I	CCNGG	1 cut(s)	119
Bme18I	GGWCC	1 cut(s)	458
BmeT110I	CYCGRG	1 cut(s)	436
BmgT120I	GGNCC	1 cut(s)	458
BmiI	GGNNCC	1 cut(s)	518
BmrFI	CCNGG	1 cut(s)	119
BsaJI	CCNNGG	1 cut(s)	118
Bse21I	CCTNAGG	1 cut(s)	149
BseBI	CCWGG	1 cut(s)	119
BseDI	CCNNGG	1 cut(s)	118
BseMII	CTCAG	1 cut(s)	163
BseSI	GKGCMC	1 cut(s)	43
BseXI	GCAGC	2 cut(s)	155, 456
BsiHKAI	GWGCWC	2 cut(s)	43, 424
BsiHKCI	CYCGRG	1 cut(s)	436
BsmAI	GTCTC	1 cut(s)	217
BsoBI	CYCGRG	1 cut(s)	436
Bsp1286I	GDGCHC	2 cut(s)	43, 424
Bsp143I	GATC	3 cut(s)	19, 195, 412
BspCNI	CTCAG	1 cut(s)	162
BspLI	GGNNCC	1 cut(s)	518
BspMI	ACCTGC	1 cut(s)	293
BspPI	GGATC	1 cut(s)	407
BssECI	CCNNGG	1 cut(s)	118
BssMI	GATC	3 cut(s)	19, 195, 412
BssSI	CACGAG	1 cut(s)	417
Bst2BI	CACGAG	1 cut(s)	417
Bst2UI	CCWGG	1 cut(s)	119
Bst4CI	ACNGT	1 cut(s)	355
BstAPI	GCANNNNNTGC	1 cut(s)	233
BstC8I	GCNNGC	2 cut(s)	238, 521
BstDEI	CTNAG	3 cut(s)	44, 60, 149
BstKTI	GATC	3 cut(s)	22, 198, 415
BstMAI	GTCTC	1 cut(s)	217
BstMBI	GATC	3 cut(s)	19, 195, 412
BstMWI	GCNNNNNNNGC	4 cut(s)	233, 277, 299, 441
BstNI	CCWGG	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	117
BstSFI	CTRYAG	1 cut(s)	474
BstSLI	GKGCMC	1 cut(s)	43
BstV1I	GCAGC	2 cut(s)	155, 456
Bsu36I	CCTNAGG	1 cut(s)	149
BtsIMutI	CAGTG	1 cut(s)	360
BveI	ACCTGC	1 cut(s)	293
Cac8I	GCNNGC	2 cut(s)	238, 521
Cfr13I	GGNCC	1 cut(s)	458
Csp6I	GTAC	1 cut(s)	511
CviAII	CATG	2 cut(s)	88, 484
CviQI	GTAC	1 cut(s)	511
DdeI	CTNAG	3 cut(s)	44, 60, 149
DpnI	GATC	3 cut(s)	21, 197, 414
DpnII	GATC	3 cut(s)	19, 195, 412
DraI	TTTAAA	1 cut(s)	453
Eco47I	GGWCC	1 cut(s)	458
Eco57I	CTGAAG	1 cut(s)	207
Eco81I	CCTNAGG	1 cut(s)	149
Eco88I	CYCGRG	1 cut(s)	436
EcoO109I	RGGNCCY	1 cut(s)	458
EcoRII	CCWGG	1 cut(s)	117
FaeI	CATG	2 cut(s)	91, 487
FaiI	YATR	8 cut(s)	89, 186, 251, 276, 407, 476, 485, 504
FatI	CATG	2 cut(s)	87, 483
FbaI	TGATCA	1 cut(s)	19
Fnu4HI	GCNGC	2 cut(s)	144, 445
Fsp4HI	GCNGC	2 cut(s)	144, 445
FspBI	CTAG	3 cut(s)	6, 324, 348
GluI	GCNGC	2 cut(s)	144, 445
Hin1II	CATG	2 cut(s)	91, 487
HinfI	GANTC	2 cut(s)	382, 395
Hpy166II	GTNNAC	1 cut(s)	41
Hpy188I	TCNGA	1 cut(s)	106
Hpy188III	TCNNGA	2 cut(s)	386, 438
Hpy8I	GTNNAC	1 cut(s)	41
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4V	TGCA	3 cut(s)	41, 176, 523
HpyF10VI	GCNNNNNNNGC	4 cut(s)	233, 277, 299, 441
HpyF3I	CTNAG	3 cut(s)	44, 60, 149
Hsp92II	CATG	2 cut(s)	91, 487
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	3 cut(s)	19, 195, 412
LmnI	GCTCC	2 cut(s)	427, 516
LpnPI	CCDG	7 cut(s)	20, 104, 131, 136, 250, 288, 399
Lsp1109I	GCAGC	2 cut(s)	155, 456
MaeI	CTAG	3 cut(s)	6, 324, 348
MaeIII	GTNAC	1 cut(s)	295
MalI	GATC	3 cut(s)	21, 197, 414
MboI	GATC	3 cut(s)	19, 195, 412
MboII	GAAGA	2 cut(s)	202, 205
MhlI	GDGCHC	2 cut(s)	43, 424
MluCI	AATT	4 cut(s)	131, 229, 285, 499
MmeI	TCCRAC	1 cut(s)	469
MnlI	CCTC	8 cut(s)	41, 154, 158, 352, 364, 426, 463, 485
MseI	TTAA	3 cut(s)	114, 452, 465
MspR9I	CCNGG	1 cut(s)	119
MvaI	CCWGG	1 cut(s)	119
MwoI	GCNNNNNNNGC	4 cut(s)	233, 277, 299, 441
NdeII	GATC	3 cut(s)	19, 195, 412
NlaIII	CATG	2 cut(s)	91, 487
NlaIV	GGNNCC	1 cut(s)	518
NmuCI	GTSAC	1 cut(s)	295
PaqCI	CACCTGC	1 cut(s)	293
PfeI	GAWTC	2 cut(s)	382, 395
PkrI	GCNGC	2 cut(s)	145, 446
PpuMI	RGGWCCY	1 cut(s)	458
Psp5II	RGGWCCY	1 cut(s)	458
Psp6I	CCWGG	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	1 cut(s)	518
PspPI	GGNCC	1 cut(s)	458
PspPPI	RGGWCCY	1 cut(s)	458
RsaI	GTAC	1 cut(s)	512
RsaNI	GTAC	1 cut(s)	511
SaqAI	TTAA	3 cut(s)	114, 452, 465
SatI	GCNGC	2 cut(s)	144, 445
Sau3AI	GATC	3 cut(s)	19, 195, 412
Sau96I	GGNCC	1 cut(s)	458
ScrFI	CCNGG	1 cut(s)	119
SduI	GDGCHC	2 cut(s)	43, 424
SetI	ASST	7 cut(s)	165, 273, 307, 405, 437, 463, 496
SfcI	CTRYAG	1 cut(s)	474
SinI	GGWCC	1 cut(s)	458
Sse9I	AATT	4 cut(s)	131, 229, 285, 499
SspMI	CTAG	3 cut(s)	6, 324, 348
StyD4I	CCNGG	1 cut(s)	117
TaaI	ACNGT	1 cut(s)	355
TaqI	TCGA	1 cut(s)	129
TasI	AATT	4 cut(s)	131, 229, 285, 499
TfiI	GAWTC	2 cut(s)	382, 395
Tru1I	TTAA	3 cut(s)	114, 452, 465
Tru9I	TTAA	3 cut(s)	114, 452, 465
TscAI	CASTG	1 cut(s)	360
TseFI	GTSAC	1 cut(s)	295
TseI	GCWGC	2 cut(s)	143, 444
Tsp45I	GTSAC	1 cut(s)	295
TspDTI	ATGAA	2 cut(s)	90, 472
TspRI	CASTG	1 cut(s)	360
VneI	GTGCAC	1 cut(s)	39
VpaK11BI	GGWCC	1 cut(s)	458
XapI	RAATTY	1 cut(s)	229
XspI	CTAG	3 cut(s)	6, 324, 348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.