FvH4_5g23980

arbuscular mycorrhizal association

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
15260139 .. 15266295
6157 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g23980.t1

Sequence Viewer

Length: 1566 bp
ATGGAAGGAAGGGGGCTGTCAGACTTCTATAGGAATACTAGTGAGGAGTTGATCCTGAGATCTTATATGGAGAGCTCAAATGGAACCCCTCTACCAACCATGGAGATGCTTGGCTTCAAGAATTTGTCACAAAATTTTCGTGCTGATAGCGAGGAGCTCTTCAAAAGCTGGCTCACAACTGGAGAGAACAATAACTTTAATTCCTCAAGCATTGCACATCGAACTCGATCAAGGAGGATTTCCACCGAAATTGCTAGTTTGTCTGGTCACCAACATGTTGGTCTCCTTCAAAAGAAAAGAAGCAATGAAGTTCTATTTCCGCAATATAACCCCATGCCTGATGAGAACTCAGCTGACCTCAATCAACATTCAAACAGGCTTGGTGTAGAAAGAGGAATGCAAGCTAGTGACTTATATTTGGCTAAGGCCTGGTTTCACAGTTCCCAACCCATGACAAGAAGCCGTTCCTCTGAATTGCGGAAGAGATATGTTGCCTTGCAAAATTCCCAACTAGTGACAGGTCTGGATAGCCTGCAAAATGCTTCAGGGAATTATAACAATGTAGTAAAAGAAGAATTTGCATTTTCAAATGGCTTCAATGTTCCTTCAATATGTGAGGTTCCTAACCAGTTGGGAACCTTCATTTCTCCATCCAATTCATCCTCATCCACTTTTGATGCCGCTCAAATGGTTGACATGGATAAAGTATCATCTGTTGTGAGCATGCTAAAGGGTACATTAGAGCGCAAAAAGCTTAGCAACCAGATTGAAAAAGGTGCAGAGGATGATAGCTCCACTAGGCTCTTCCCTAGTCAAGAAGCTGTAGTCAACACTGGTTTTGATAAAGGGCAAGGTAATCAGCTTCAAGATATGGTGAGAAATTTTCAGGAAGTATCCGCTATCGAAGTTAAGGATCATGAGGGTATGCAAAAAGTTGAAGGATCCCTGGATGTTGAGATGGAAGGCTTCATAAATCTCACAAACCCAAAGCCATTGAGTAGGACTTCTCAAGAACCTTCACAAAGTGAATCATCTGCTGCAGCACCAGTAGCTTCATCTGGGATTGATGCATGTGATGGTCCCAGTAACTCAAGTCAAACTATGAGCATATGTGAAAGTTCACTGAAACGAGCAGGAAATAGGAGCTCAGAAAATGGCTCTAGATCGAAAGATATCAGAGAACGTATAATTGGCAATTTGAAAGATGATCAAAAGAGGGGGGAACGCTTAGAGAGATATGGATCTGTGACATCAGCTGTTTCAGGAGATAAGGAGGATGCCACAAAAAAGCGGAGGGTGGAGAGATCACGCAAAATGGCAGAGGCAAAGGAAAGAAACTCAACTCCAGTAATTCCATCAGATATACAATCTATCTTGAAGCGGTGTGAAAATCTTGAAAAGGAAGTCCGGTCCCTCAAACTTAACCTGTCCTTCATGAATAGGAAGGATTCTGAGCAGACAAAGCAGATAGAGGAGCTTCAGCAGCAAAACGAAGAATTAACAGACGAAAAAGAGCGCCTTTTAGAAGAGATCGAGAGGATCCTTGCAGAAAATGGCAAGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

522

Amino Acids

58.29

Weight (kDa)

5.71

Isoelectric Point (pI)

58.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 555
AccBSI CCGCTC 1 cut(s) 683
AciI CCGC 6 cut(s) 320, 478, 681, 897, 1291, 1381
AclWI GGATC 7 cut(s) 46, 921, 936, 949, 1249, 1534, 1547
AcsI RAATTY 5 cut(s) 121, 133, 502, 575, 880
AcuI CTGAAG 2 cut(s) 528, 1463
AdeI CACNNNGTG 1 cut(s) 1025
AfaI GTAC 1 cut(s) 736
AflIII ACRYGT 1 cut(s) 274
AhlI ACTAGT 2 cut(s) 38, 511
AjnI CCWGG 2 cut(s) 428, 945
AjuI GAANNNNNNNTTGG 2 cut(s) 1173, 1205
Alw21I GWGCWC 3 cut(s) 77, 159, 1148
Alw26I GTCTC 1 cut(s) 287
AlwI GGATC 7 cut(s) 46, 921, 936, 949, 1249, 1534, 1547
AoxI GGCC 1 cut(s) 426
ApeKI GCWGC 3 cut(s) 1037, 1040, 1483
ApoI RAATTY 5 cut(s) 121, 133, 502, 575, 880
Asp700I GAANNNNTTC 1 cut(s) 463
AspLEI GCGC 2 cut(s) 747, 1518
AspS9I GGNCC 2 cut(s) 1079, 1410
AsuHPI GGTGA 2 cut(s) 260, 886
AvaII GGWCC 2 cut(s) 1079, 1410
BamHI GGATCC 2 cut(s) 941, 1539
BanII GRGCYC 3 cut(s) 77, 159, 1148
Bbv12I GWGCWC 3 cut(s) 77, 159, 1148
BbvI GCAGC 3 cut(s) 1024, 1052, 1495
BccI CCATC 4 cut(s) 658, 952, 1070, 1363
BceAI ACGGC 1 cut(s) 447
BciT130I CCWGG 2 cut(s) 430, 947
BciVI GTATCC 1 cut(s) 904
BclI TGATCA 1 cut(s) 1207
BcoDI GTCTC 1 cut(s) 287
BcuI ACTAGT 2 cut(s) 38, 511
BfaI CTAG 7 cut(s) 39, 255, 405, 512, 798, 810, 1161
BfmI CTRYAG 3 cut(s) 28, 822, 1038
BfoI RGCGCY 1 cut(s) 1519
BfuI GTATCC 1 cut(s) 904
BglII AGATCT 1 cut(s) 59
BisI GCNGC 4 cut(s) 681, 1038, 1041, 1484
BlpI GCTNAGC 1 cut(s) 755
BlsI GCNGC 4 cut(s) 682, 1039, 1042, 1485
Bme1390I CCNGG 2 cut(s) 430, 947
Bme18I GGWCC 2 cut(s) 1079, 1410
BmgT120I GGNCC 2 cut(s) 1079, 1410
BmiI GGNNCC 7 cut(s) 85, 621, 637, 943, 1081, 1412, 1541
BmrFI CCNGG 2 cut(s) 430, 947
BmrI ACTGGG 1 cut(s) 1077
BmsI GCATC 4 cut(s) 96, 667, 1057, 1267
BmuI ACTGGG 1 cut(s) 1077
BpmI CTGGAG 2 cut(s) 201, 1329
Bpu10I CCTNAGC 1 cut(s) 423
Bpu1102I GCTNAGC 1 cut(s) 755
BpuEI CTTGAG 3 cut(s) 190, 993, 1075
BsaBI GATNNNNATC 1 cut(s) 1240
BsaI GGTCTC 1 cut(s) 287
BsaJI CCNNGG 2 cut(s) 99, 945
BsaWI WCCGGW 1 cut(s) 1407
Bse1I ACTGG 6 cut(s) 184, 628, 838, 1046, 1083, 1346
Bse3DI GCAATG 2 cut(s) 210, 310
Bse8I GATNNNNATC 1 cut(s) 1240
BseBI CCWGG 2 cut(s) 430, 947
BseDI CCNNGG 2 cut(s) 99, 945
BseGI GGATG 6 cut(s) 650, 659, 665, 790, 955, 1282
BseJI GATNNNNATC 1 cut(s) 1240
BseMI GCAATG 2 cut(s) 210, 310
BseMII CTCAG 4 cut(s) 47, 363, 1161, 1443
BseNI ACTGG 6 cut(s) 184, 628, 838, 1046, 1083, 1346
BseRI GAGGAG 3 cut(s) 59, 167, 1487
BseXI GCAGC 3 cut(s) 1024, 1052, 1495
BsgI GTGCAG 1 cut(s) 798
BshFI GGCC 1 cut(s) 428
BsiHKAI GWGCWC 3 cut(s) 77, 159, 1148
BsiSI CCGG 1 cut(s) 1408
BslFI GGGAC 2 cut(s) 1065, 1396
BsmAI GTCTC 1 cut(s) 287
BsmFI GGGAC 2 cut(s) 1065, 1396
BsmI GAATGC 1 cut(s) 402
BsnI GGCC 1 cut(s) 428
Bso31I GGTCTC 1 cut(s) 287
Bsp1286I GDGCHC 3 cut(s) 77, 159, 1148
Bsp1720I GCTNAGC 1 cut(s) 755
Bsp19I CCATGG 1 cut(s) 99
BspACI CCGC 6 cut(s) 320, 478, 681, 897, 1291, 1381
BspANI GGCC 1 cut(s) 428
BspCNI CTCAG 4 cut(s) 48, 362, 1160, 1444
BspHI TCATGA 2 cut(s) 916, 1434
BspLI GGNNCC 7 cut(s) 85, 621, 637, 943, 1081, 1412, 1541
BspMAI CTGCAG 1 cut(s) 1042
BspPI GGATC 7 cut(s) 46, 921, 936, 949, 1249, 1534, 1547
BspQI GCTCTTC 2 cut(s) 164, 809
BspTNI GGTCTC 1 cut(s) 287
BsrBI CCGCTC 1 cut(s) 683
BsrDI GCAATG 2 cut(s) 210, 310
BsrI ACTGG 6 cut(s) 184, 628, 838, 1046, 1083, 1346
BssECI CCNNGG 2 cut(s) 99, 945
BssT1I CCWWGG 1 cut(s) 99
Bst2UI CCWGG 2 cut(s) 430, 947
Bst4CI ACNGT 1 cut(s) 440
Bst6I CTCTTC 4 cut(s) 164, 476, 809, 1521
BstC8I GCNNGC 4 cut(s) 170, 402, 533, 725
BstDEI CTNAG 7 cut(s) 56, 349, 423, 755, 1147, 1228, 1452
BstDSI CCRYGG 1 cut(s) 99
BstEII GGTNACC 1 cut(s) 266
BstF5I GGATG 6 cut(s) 650, 659, 665, 790, 955, 1282
BstH2I RGCGCY 1 cut(s) 1519
BstHHI GCGC 2 cut(s) 747, 1518
BstMAI GTCTC 1 cut(s) 287
BstMWI GCNNNNNNNGC 4 cut(s) 751, 1049, 1462, 1483
BstNI CCWGG 2 cut(s) 430, 947
BstNSI RCATGY 3 cut(s) 278, 727, 1074
BstPI GGTNACC 1 cut(s) 266
BstSCI CCNGG 2 cut(s) 428, 945
BstSFI CTRYAG 3 cut(s) 28, 822, 1038
BstV1I GCAGC 3 cut(s) 1024, 1052, 1495
BstX2I RGATCY 4 cut(s) 59, 941, 1241, 1539
BstXI CCANNNNNNTGG 1 cut(s) 278
BstYI RGATCY 4 cut(s) 59, 941, 1241, 1539
BsuI GTATCC 1 cut(s) 904
BsuRI GGCC 1 cut(s) 428
BtgI CCRYGG 1 cut(s) 99
BtsCI GGATG 6 cut(s) 650, 659, 665, 790, 955, 1282
BtsIMutI CAGTG 2 cut(s) 831, 1121
Cac8I GCNNGC 4 cut(s) 170, 402, 533, 725
CciI TCATGA 2 cut(s) 916, 1434
CfoI GCGC 2 cut(s) 747, 1518
Cfr13I GGNCC 2 cut(s) 1079, 1410
Csp6I GTAC 1 cut(s) 735
CspCI CAANNNNNGTGG 2 cut(s) 232, 267
CviAII CATG 9 cut(s) 100, 275, 334, 451, 697, 724, 917, 1071, 1435
CviQI GTAC 1 cut(s) 735
DdeI CTNAG 7 cut(s) 56, 349, 423, 755, 1147, 1228, 1452
DraIII CACNNNGTG 1 cut(s) 1025
Eam1104I CTCTTC 4 cut(s) 164, 476, 809, 1521
EarI CTCTTC 4 cut(s) 164, 476, 809, 1521
Ecl136II GAGCTC 3 cut(s) 75, 157, 1146
Eco130I CCWWGG 1 cut(s) 99
Eco147I AGGCCT 1 cut(s) 428
Eco24I GRGCYC 3 cut(s) 77, 159, 1148
Eco31I GGTCTC 1 cut(s) 287
Eco32I GATATC 1 cut(s) 1174
Eco47I GGWCC 2 cut(s) 1079, 1410
Eco53kI GAGCTC 3 cut(s) 75, 157, 1146
Eco57I CTGAAG 2 cut(s) 528, 1463
Eco91I GGTNACC 1 cut(s) 266
EcoICRI GAGCTC 3 cut(s) 75, 157, 1146
EcoO65I GGTNACC 1 cut(s) 266
EcoRII CCWGG 2 cut(s) 428, 945
EcoRV GATATC 1 cut(s) 1174
EcoT14I CCWWGG 1 cut(s) 99
EcoT22I ATGCAT 1 cut(s) 1072
EcoT38I GRGCYC 3 cut(s) 77, 159, 1148
ErhI CCWWGG 1 cut(s) 99
FaeI CATG 9 cut(s) 103, 278, 337, 454, 700, 727, 920, 1074, 1438
FalI AAGNNNNNCTT 2 cut(s) 1503, 1535
FaqI GGGAC 2 cut(s) 1065, 1396
FatI CATG 9 cut(s) 99, 274, 333, 450, 696, 723, 916, 1070, 1434
FauNDI CATATG 1 cut(s) 1109
FbaI TGATCA 1 cut(s) 1207
Fnu4HI GCNGC 4 cut(s) 681, 1038, 1041, 1484
FokI GGATG 6 cut(s) 637, 646, 652, 797, 962, 1289
FriOI GRGCYC 3 cut(s) 77, 159, 1148
Fsp4HI GCNGC 4 cut(s) 681, 1038, 1041, 1484
FspBI CTAG 7 cut(s) 39, 255, 405, 512, 798, 810, 1161
GlaI GCGC 2 cut(s) 746, 1517
GluI GCNGC 4 cut(s) 681, 1038, 1041, 1484
GsuI CTGGAG 2 cut(s) 201, 1329
HaeII RGCGCY 1 cut(s) 1519
HaeIII GGCC 1 cut(s) 428
HapII CCGG 1 cut(s) 1408
HhaI GCGC 2 cut(s) 747, 1518
Hin1II CATG 9 cut(s) 103, 278, 337, 454, 700, 727, 920, 1074, 1438
Hin6I GCGC 2 cut(s) 745, 1516
HinP1I GCGC 2 cut(s) 745, 1516
HincII GTYRAC 2 cut(s) 694, 829
HindII GTYRAC 2 cut(s) 694, 829
HindIII AAGCTT 1 cut(s) 752
HinfI GANTC 2 cut(s) 1028, 1448
HpaII CCGG 1 cut(s) 1408
HphI GGTGA 2 cut(s) 260, 886
Hpy166II GTNNAC 3 cut(s) 694, 829, 1121
Hpy188I TCNGA 6 cut(s) 22, 472, 1150, 1178, 1360, 1453
Hpy8I GTNNAC 3 cut(s) 694, 829, 1121
HpyAV CCTTC 9 cut(s) 3, 296, 615, 649, 932, 956, 1026, 1438, 1441
HpyCH4III ACNGT 1 cut(s) 440
HpyCH4IV ACGT 1 cut(s) 1183
HpyF10VI GCNNNNNNNGC 4 cut(s) 751, 1049, 1462, 1483
HpyF3I CTNAG 7 cut(s) 56, 349, 423, 755, 1147, 1228, 1452
HpySE526I ACGT 1 cut(s) 1183
Hsp92II CATG 9 cut(s) 103, 278, 337, 454, 700, 727, 920, 1074, 1438
HspAI GCGC 2 cut(s) 745, 1516
Ksp22I TGATCA 1 cut(s) 1207
LguI GCTCTTC 2 cut(s) 164, 809
LmnI GCTCC 4 cut(s) 154, 797, 1143, 1474
Lsp1109I GCAGC 3 cut(s) 1024, 1052, 1495
LweI GCATC 4 cut(s) 96, 667, 1057, 1267
MaeI CTAG 7 cut(s) 39, 255, 405, 512, 798, 810, 1161
MaeII ACGT 1 cut(s) 1183
MaeIII GTNAC 6 cut(s) 126, 266, 407, 514, 1085, 1246
MbiI CCGCTC 1 cut(s) 683
MboII GAAGA 6 cut(s) 151, 493, 584, 796, 1505, 1538
MflI RGATCY 4 cut(s) 59, 941, 1241, 1539
MhlI GDGCHC 3 cut(s) 77, 159, 1148
Mph1103I ATGCAT 1 cut(s) 1072
MroXI GAANNNNTTC 1 cut(s) 463
MseI TTAA 5 cut(s) 198, 909, 1422, 1499, 1564
MslI CAYNNNNRTG 2 cut(s) 104, 273
MspA1I CMGCKG 2 cut(s) 353, 1256
MspI CCGG 1 cut(s) 1408
MspR9I CCNGG 2 cut(s) 430, 947
Mva1269I GAATGC 1 cut(s) 402
MvaI CCWGG 2 cut(s) 430, 947
MwoI GCNNNNNNNGC 4 cut(s) 751, 1049, 1462, 1483
NcoI CCATGG 1 cut(s) 99
NdeI CATATG 1 cut(s) 1109
NlaIII CATG 9 cut(s) 103, 278, 337, 454, 700, 727, 920, 1074, 1438
NlaIV GGNNCC 7 cut(s) 85, 621, 637, 943, 1081, 1412, 1541
NmuCI GTSAC 5 cut(s) 126, 266, 407, 514, 1246
NsiI ATGCAT 1 cut(s) 1072
NspI RCATGY 3 cut(s) 278, 727, 1074
PaeI GCATGC 1 cut(s) 727
PagI TCATGA 2 cut(s) 916, 1434
PceI AGGCCT 1 cut(s) 428
PciI ACATGT 1 cut(s) 274
PciSI GCTCTTC 2 cut(s) 164, 809
PctI GAATGC 1 cut(s) 402
PdmI GAANNNNTTC 1 cut(s) 463
PfeI GAWTC 2 cut(s) 1028, 1448
PkrI GCNGC 4 cut(s) 682, 1039, 1042, 1485
PscI ACATGT 1 cut(s) 274
PsiI TTATAA 1 cut(s) 555
Psp124BI GAGCTC 3 cut(s) 77, 159, 1148
Psp6I CCWGG 2 cut(s) 428, 945
PspEI GGTNACC 1 cut(s) 266
PspGI CCWGG 2 cut(s) 428, 945
PspN4I GGNNCC 7 cut(s) 85, 621, 637, 943, 1081, 1412, 1541
PspPI GGNCC 2 cut(s) 1079, 1410
PstI CTGCAG 1 cut(s) 1042
PsuI RGATCY 4 cut(s) 59, 941, 1241, 1539
PvuII CAGCTG 2 cut(s) 353, 1256
RsaI GTAC 1 cut(s) 736
RsaNI GTAC 1 cut(s) 735
RseI CAYNNNNRTG 2 cut(s) 104, 273
SacI GAGCTC 3 cut(s) 77, 159, 1148
SapI GCTCTTC 2 cut(s) 164, 809
SaqAI TTAA 5 cut(s) 198, 909, 1422, 1499, 1564
SatI GCNGC 4 cut(s) 681, 1038, 1041, 1484
Sau96I GGNCC 2 cut(s) 1079, 1410
ScrFI CCNGG 2 cut(s) 430, 947
SduI GDGCHC 3 cut(s) 77, 159, 1148
SfaNI GCATC 4 cut(s) 96, 667, 1057, 1267
SfcI CTRYAG 3 cut(s) 28, 822, 1038
SinI GGWCC 2 cut(s) 1079, 1410
SmiMI CAYNNNNRTG 2 cut(s) 104, 273
SmlI CTYRAG 3 cut(s) 205, 1008, 1090
SmoI CTYRAG 3 cut(s) 205, 1008, 1090
SpeI ACTAGT 2 cut(s) 38, 511
SphI GCATGC 1 cut(s) 727
SseBI AGGCCT 1 cut(s) 428
SsiI CCGC 6 cut(s) 320, 478, 681, 897, 1291, 1381
SspMI CTAG 7 cut(s) 39, 255, 405, 512, 798, 810, 1161
SstI GAGCTC 3 cut(s) 77, 159, 1148
StuI AGGCCT 1 cut(s) 428
StyD4I CCNGG 2 cut(s) 428, 945
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 1 cut(s) 440
TaiI ACGT 1 cut(s) 1186
TaqI TCGA 5 cut(s) 220, 226, 903, 1166, 1533
TauI GCSGC 1 cut(s) 683
TfiI GAWTC 2 cut(s) 1028, 1448
Tru1I TTAA 5 cut(s) 198, 909, 1422, 1499, 1564
Tru9I TTAA 5 cut(s) 198, 909, 1422, 1499, 1564
TscAI CASTG 2 cut(s) 838, 1128
TseFI GTSAC 5 cut(s) 126, 266, 407, 514, 1246
TseI GCWGC 3 cut(s) 1037, 1040, 1483
Tsp45I GTSAC 5 cut(s) 126, 266, 407, 514, 1246
TspDTI ATGAA 7 cut(s) 321, 631, 648, 958, 1044, 1423, 1451
TspRI CASTG 2 cut(s) 838, 1128
VpaK11BI GGWCC 2 cut(s) 1079, 1410
XapI RAATTY 5 cut(s) 121, 133, 502, 575, 880
XbaI TCTAGA 1 cut(s) 1160
XceI RCATGY 3 cut(s) 278, 727, 1074
XmnI GAANNNNTTC 1 cut(s) 463
XspI CTAG 7 cut(s) 39, 255, 405, 512, 798, 810, 1161
Zsp2I ATGCAT 1 cut(s) 1072
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.