arbuscular mycorrhizal association
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g23980 FvH4_5g23980 |
| malus_domestica | MD00G1002000.v1.1 MD06G1015600.v1.1 |
| prunus_persica | Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 |
| pyrus_communis | pycom06g01260 pycom16g25500 |
| rosa_chinensis | RchiOBHm_Chr7g0213421 |
| rosa_laevigata | RLG00000002805 |
| rosa_multiflora | Rmu_sc0003740.1_g000017 Rmu_sc0013012.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00245920 |
| rosa_rugosa | Rorug07G0142100 Rorug07G0142200 |
| rosa_samantha | Rh7AG274100 Rh7BG269400 Rh7CG293200 Rh7DG281600 |
| rosa_wichuraiana | Rw7G023770 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 412 |
| AciI | CCGC | 1 cut(s) | 1522 |
| AclI | AACGTT | 1 cut(s) | 1065 |
| AcsI | RAATTY | 6 cut(s) | 244, 496, 704, 993, 1327, 1477 |
| AcuI | CTGAAG | 1 cut(s) | 657 |
| AfaI | GTAC | 3 cut(s) | 265, 346, 865 |
| AflII | CTTAAG | 1 cut(s) | 1126 |
| AflIII | ACRYGT | 1 cut(s) | 403 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 475 |
| AjnI | CCWGG | 2 cut(s) | 557, 1077 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 920, 952, 1305, 1337 |
| AluBI | AGCT | 9 cut(s) | 27, 198, 280, 291, 883, 924, 1265, 1388, 1618 |
| AluI | AGCT | 9 cut(s) | 27, 198, 280, 291, 883, 924, 1265, 1388, 1618 |
| Alw21I | GWGCWC | 2 cut(s) | 200, 282 |
| Alw26I | GTCTC | 2 cut(s) | 255, 302 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1694 |
| AoxI | GGCC | 3 cut(s) | 555, 658, 931 |
| ApeKI | GCWGC | 4 cut(s) | 118, 1169, 1172, 1618 |
| ApoI | RAATTY | 6 cut(s) | 244, 496, 704, 993, 1327, 1477 |
| AseI | ATTAAT | 1 cut(s) | 456 |
| AspLEI | GCGC | 1 cut(s) | 876 |
| AspS9I | GGNCC | 2 cut(s) | 765, 1211 |
| AsuHPI | GGTGA | 3 cut(s) | 494, 742, 859 |
| AvaII | GGWCC | 2 cut(s) | 765, 1211 |
| BamHI | GGATCC | 2 cut(s) | 1073, 1680 |
| BanII | GRGCYC | 2 cut(s) | 200, 282 |
| BbsI | GAAGAC | 1 cut(s) | 1641 |
| Bbv12I | GWGCWC | 2 cut(s) | 200, 282 |
| BbvI | GCAGC | 4 cut(s) | 130, 1156, 1159, 1605 |
| BccI | CCATC | 4 cut(s) | 118, 1084, 1202, 1504 |
| BceAI | ACGGC | 1 cut(s) | 1303 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 971, 1005 |
| BciT130I | CCWGG | 2 cut(s) | 559, 1079 |
| BciVI | GTATCC | 1 cut(s) | 1036 |
| BclI | TGATCA | 2 cut(s) | 973, 1339 |
| BcoDI | GTCTC | 2 cut(s) | 255, 302 |
| BfaI | CTAG | 3 cut(s) | 384, 534, 1664 |
| BfmI | CTRYAG | 4 cut(s) | 151, 642, 662, 1619 |
| BfrI | CTTAAG | 1 cut(s) | 1126 |
| BfuI | GTATCC | 1 cut(s) | 1036 |
| BglII | AGATCT | 1 cut(s) | 182 |
| BisI | GCNGC | 4 cut(s) | 119, 1170, 1173, 1619 |
| BlsI | GCNGC | 4 cut(s) | 120, 1171, 1174, 1620 |
| Bme1390I | CCNGG | 2 cut(s) | 559, 1079 |
| Bme18I | GGWCC | 2 cut(s) | 765, 1211 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 475 |
| BmgT120I | GGNCC | 2 cut(s) | 765, 1211 |
| BmiI | GGNNCC | 4 cut(s) | 766, 1075, 1213, 1682 |
| BmrFI | CCNGG | 2 cut(s) | 559, 1079 |
| BmsI | GCATC | 3 cut(s) | 219, 1189, 1408 |
| BpiI | GAAGAC | 1 cut(s) | 1641 |
| BpmI | CTGGAG | 1 cut(s) | 324 |
| Bpu10I | CCTNAGC | 1 cut(s) | 552 |
| BpuEI | CTTGAG | 3 cut(s) | 930, 1106, 1125 |
| Bsa29I | ATCGAT | 1 cut(s) | 1366 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1372 |
| BsaI | GGTCTC | 1 cut(s) | 302 |
| BsaJI | CCNNGG | 4 cut(s) | 222, 558, 843, 1077 |
| Bse1I | ACTGG | 5 cut(s) | 307, 970, 1008, 1178, 1699 |
| Bse3DI | GCAATG | 1 cut(s) | 333 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1372 |
| BseBI | CCWGG | 2 cut(s) | 559, 1079 |
| BseCI | ATCGAT | 1 cut(s) | 1366 |
| BseDI | CCNNGG | 4 cut(s) | 222, 558, 843, 1077 |
| BseGI | GGATG | 4 cut(s) | 794, 839, 1423, 1651 |
| BseJI | GATNNNNATC | 1 cut(s) | 1372 |
| BseMI | GCAATG | 1 cut(s) | 333 |
| BseMII | CTCAG | 7 cut(s) | 42, 170, 213, 587, 1123, 1226, 1584 |
| BseNI | ACTGG | 5 cut(s) | 307, 970, 1008, 1178, 1699 |
| BseRI | GAGGAG | 5 cut(s) | 182, 290, 625, 1628, 1682 |
| BseXI | GCAGC | 4 cut(s) | 130, 1156, 1159, 1605 |
| BseYI | CCCAGC | 1 cut(s) | 1214 |
| BsgI | GTGCAG | 2 cut(s) | 1158, 1422 |
| BshFI | GGCC | 3 cut(s) | 557, 660, 933 |
| BshVI | ATCGAT | 1 cut(s) | 1366 |
| BsiHKAI | GWGCWC | 2 cut(s) | 200, 282 |
| BslFI | GGGAC | 2 cut(s) | 778, 1197 |
| BsmAI | GTCTC | 2 cut(s) | 255, 302 |
| BsmFI | GGGAC | 2 cut(s) | 778, 1197 |
| BsmI | GAATGC | 1 cut(s) | 531 |
| BsnI | GGCC | 3 cut(s) | 557, 660, 933 |
| Bso31I | GGTCTC | 1 cut(s) | 302 |
| Bsp1286I | GDGCHC | 2 cut(s) | 200, 282 |
| Bsp19I | CCATGG | 1 cut(s) | 222 |
| BspACI | CCGC | 1 cut(s) | 1522 |
| BspANI | GGCC | 3 cut(s) | 557, 660, 933 |
| BspCNI | CTCAG | 7 cut(s) | 41, 171, 212, 586, 1122, 1227, 1585 |
| BspDI | ATCGAT | 1 cut(s) | 1366 |
| BspHI | TCATGA | 2 cut(s) | 997, 1575 |
| BspLI | GGNNCC | 4 cut(s) | 766, 1075, 1213, 1682 |
| BspMAI | CTGCAG | 2 cut(s) | 666, 1623 |
| BspQI | GCTCTTC | 1 cut(s) | 287 |
| BspTI | CTTAAG | 1 cut(s) | 1126 |
| BspTNI | GGTCTC | 1 cut(s) | 302 |
| BsrDI | GCAATG | 1 cut(s) | 333 |
| BsrI | ACTGG | 5 cut(s) | 307, 970, 1008, 1178, 1699 |
| BssECI | CCNNGG | 4 cut(s) | 222, 558, 843, 1077 |
| BssT1I | CCWWGG | 1 cut(s) | 222 |
| Bst2UI | CCWGG | 2 cut(s) | 559, 1079 |
| Bst4CI | ACNGT | 1 cut(s) | 646 |
| Bst6I | CTCTTC | 2 cut(s) | 127, 287 |
| BstAFI | CTTAAG | 1 cut(s) | 1126 |
| BstC8I | GCNNGC | 5 cut(s) | 102, 293, 531, 662, 854 |
| BstDSI | CCRYGG | 2 cut(s) | 222, 843 |
| BstEII | GGTNACC | 1 cut(s) | 748 |
| BstF5I | GGATG | 4 cut(s) | 794, 839, 1423, 1651 |
| BstHHI | GCGC | 1 cut(s) | 876 |
| BstMAI | GTCTC | 2 cut(s) | 255, 302 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 880, 930, 1603 |
| BstNI | CCWGG | 2 cut(s) | 559, 1079 |
| BstNSI | RCATGY | 2 cut(s) | 407, 856 |
| BstPI | GGTNACC | 1 cut(s) | 748 |
| BstSCI | CCNGG | 2 cut(s) | 557, 1077 |
| BstSFI | CTRYAG | 4 cut(s) | 151, 642, 662, 1619 |
| BstV1I | GCAGC | 4 cut(s) | 130, 1156, 1159, 1605 |
| BstV2I | GAAGAC | 1 cut(s) | 1641 |
| BstX2I | RGATCY | 5 cut(s) | 182, 1073, 1081, 1373, 1680 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 760 |
| BstYI | RGATCY | 5 cut(s) | 182, 1073, 1081, 1373, 1680 |
| Bsu15I | ATCGAT | 1 cut(s) | 1366 |
| BsuI | GTATCC | 1 cut(s) | 1036 |
| BsuRI | GGCC | 3 cut(s) | 557, 660, 933 |
| BsuTUI | ATCGAT | 1 cut(s) | 1366 |
| BtgI | CCRYGG | 2 cut(s) | 222, 843 |
| BtsCI | GGATG | 4 cut(s) | 794, 839, 1423, 1651 |
| BtsI | GCAGTG | 1 cut(s) | 1410 |
| BtsIMutI | CAGTG | 4 cut(s) | 36, 963, 1232, 1410 |
| Cac8I | GCNNGC | 5 cut(s) | 102, 293, 531, 662, 854 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1694 |
| CciI | TCATGA | 2 cut(s) | 997, 1575 |
| CfoI | GCGC | 1 cut(s) | 876 |
| Cfr13I | GGNCC | 2 cut(s) | 765, 1211 |
| ClaI | ATCGAT | 1 cut(s) | 1366 |
| Csp6I | GTAC | 3 cut(s) | 264, 345, 864 |
| CviAII | CATG | 9 cut(s) | 223, 404, 463, 509, 625, 826, 853, 998, 1576 |
| CviQI | GTAC | 3 cut(s) | 264, 345, 864 |
| DriI | GACNNNNNGTC | 1 cut(s) | 475 |
| Eam1104I | CTCTTC | 2 cut(s) | 127, 287 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 475 |
| EarI | CTCTTC | 2 cut(s) | 127, 287 |
| Ecl136II | GAGCTC | 2 cut(s) | 198, 280 |
| Eco130I | CCWWGG | 1 cut(s) | 222 |
| Eco147I | AGGCCT | 2 cut(s) | 557, 660 |
| Eco24I | GRGCYC | 2 cut(s) | 200, 282 |
| Eco31I | GGTCTC | 1 cut(s) | 302 |
| Eco32I | GATATC | 1 cut(s) | 369 |
| Eco47I | GGWCC | 2 cut(s) | 765, 1211 |
| Eco53kI | GAGCTC | 2 cut(s) | 198, 280 |
| Eco57I | CTGAAG | 1 cut(s) | 657 |
| Eco91I | GGTNACC | 1 cut(s) | 748 |
| EcoICRI | GAGCTC | 2 cut(s) | 198, 280 |
| EcoO109I | RGGNCCY | 1 cut(s) | 765 |
| EcoO65I | GGTNACC | 1 cut(s) | 748 |
| EcoRI | GAATTC | 2 cut(s) | 993, 1477 |
| EcoRII | CCWGG | 2 cut(s) | 557, 1077 |
| EcoRV | GATATC | 1 cut(s) | 369 |
| EcoT14I | CCWWGG | 1 cut(s) | 222 |
| EcoT38I | GRGCYC | 2 cut(s) | 200, 282 |
| ErhI | CCWWGG | 1 cut(s) | 222 |
| FaeI | CATG | 9 cut(s) | 226, 407, 466, 512, 628, 829, 856, 1001, 1579 |
| FaqI | GGGAC | 2 cut(s) | 778, 1197 |
| FatI | CATG | 9 cut(s) | 222, 403, 462, 508, 624, 825, 852, 997, 1575 |
| FbaI | TGATCA | 2 cut(s) | 973, 1339 |
| FblI | GTMKAC | 1 cut(s) | 412 |
| Fnu4HI | GCNGC | 4 cut(s) | 119, 1170, 1173, 1619 |
| FokI | GGATG | 4 cut(s) | 781, 826, 1430, 1658 |
| FriOI | GRGCYC | 2 cut(s) | 200, 282 |
| Fsp4HI | GCNGC | 4 cut(s) | 119, 1170, 1173, 1619 |
| FspBI | CTAG | 3 cut(s) | 384, 534, 1664 |
| GlaI | GCGC | 1 cut(s) | 875 |
| GluI | GCNGC | 4 cut(s) | 119, 1170, 1173, 1619 |
| GsaI | CCCAGC | 1 cut(s) | 1218 |
| GsuI | CTGGAG | 1 cut(s) | 324 |
| HaeIII | GGCC | 3 cut(s) | 557, 660, 933 |
| HhaI | GCGC | 1 cut(s) | 876 |
| Hin1II | CATG | 9 cut(s) | 226, 407, 466, 512, 628, 829, 856, 1001, 1579 |
| Hin6I | GCGC | 1 cut(s) | 874 |
| HinP1I | GCGC | 1 cut(s) | 874 |
| HincII | GTYRAC | 2 cut(s) | 961, 1042 |
| HindII | GTYRAC | 2 cut(s) | 961, 1042 |
| HindIII | AAGCTT | 1 cut(s) | 881 |
| HinfI | GANTC | 4 cut(s) | 38, 1160, 1589, 1659 |
| HpaI | GTTAAC | 1 cut(s) | 1042 |
| HphI | GGTGA | 3 cut(s) | 494, 742, 859 |
| Hpy166II | GTNNAC | 4 cut(s) | 413, 961, 1042, 1408 |
| Hpy188I | TCNGA | 8 cut(s) | 145, 601, 1112, 1282, 1310, 1501, 1594, 1690 |
| Hpy188III | TCNNGA | 9 cut(s) | 178, 947, 998, 1019, 1085, 1142, 1516, 1535, 1576 |
| Hpy8I | GTNNAC | 4 cut(s) | 413, 961, 1042, 1408 |
| HpyCH4III | ACNGT | 1 cut(s) | 646 |
| HpyCH4IV | ACGT | 1 cut(s) | 1065 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 880, 930, 1603 |
| HpySE526I | ACGT | 1 cut(s) | 1065 |
| Hsp92II | CATG | 9 cut(s) | 226, 407, 466, 512, 628, 829, 856, 1001, 1579 |
| HspAI | GCGC | 1 cut(s) | 874 |
| Ksp22I | TGATCA | 2 cut(s) | 973, 1339 |
| KspAI | GTTAAC | 1 cut(s) | 1042 |
| LguI | GCTCTTC | 1 cut(s) | 287 |
| LmnI | GCTCC | 4 cut(s) | 277, 929, 1354, 1615 |
| Lsp1109I | GCAGC | 4 cut(s) | 130, 1156, 1159, 1605 |
| LweI | GCATC | 3 cut(s) | 219, 1189, 1408 |
| MaeI | CTAG | 3 cut(s) | 384, 534, 1664 |
| MaeII | ACGT | 1 cut(s) | 1065 |
| MaeIII | GTNAC | 6 cut(s) | 482, 748, 821, 887, 1378, 1446 |
| MboII | GAAGA | 4 cut(s) | 144, 274, 926, 1646 |
| MfeI | CAATTG | 2 cut(s) | 313, 758 |
| MflI | RGATCY | 5 cut(s) | 182, 1073, 1081, 1373, 1680 |
| MhlI | GDGCHC | 2 cut(s) | 200, 282 |
| MlyI | GAGTC | 1 cut(s) | 1653 |
| MseI | TTAA | 6 cut(s) | 240, 456, 696, 1041, 1127, 1563 |
| MslI | CAYNNNNRTG | 1 cut(s) | 227 |
| MspA1I | CMGCKG | 1 cut(s) | 1388 |
| MspCI | CTTAAG | 1 cut(s) | 1126 |
| MspR9I | CCNGG | 2 cut(s) | 559, 1079 |
| MunI | CAATTG | 2 cut(s) | 313, 758 |
| Mva1269I | GAATGC | 1 cut(s) | 531 |
| MvaI | CCWGG | 2 cut(s) | 559, 1079 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 880, 930, 1603 |
| NcoI | CCATGG | 1 cut(s) | 222 |
| NlaIII | CATG | 9 cut(s) | 226, 407, 466, 512, 628, 829, 856, 1001, 1579 |
| NlaIV | GGNNCC | 4 cut(s) | 766, 1075, 1213, 1682 |
| NmuCI | GTSAC | 5 cut(s) | 482, 748, 821, 1378, 1446 |
| NspI | RCATGY | 2 cut(s) | 407, 856 |
| PaeI | GCATGC | 1 cut(s) | 856 |
| PagI | TCATGA | 2 cut(s) | 997, 1575 |
| PceI | AGGCCT | 2 cut(s) | 557, 660 |
| PciI | ACATGT | 1 cut(s) | 403 |
| PciSI | GCTCTTC | 1 cut(s) | 287 |
| PctI | GAATGC | 1 cut(s) | 531 |
| PfeI | GAWTC | 3 cut(s) | 38, 1160, 1589 |
| PkrI | GCNGC | 4 cut(s) | 120, 1171, 1174, 1620 |
| PleI | GAGTC | 1 cut(s) | 1653 |
| PpsI | GAGTC | 1 cut(s) | 1653 |
| PpuMI | RGGWCCY | 1 cut(s) | 765 |
| PscI | ACATGT | 1 cut(s) | 403 |
| PshBI | ATTAAT | 1 cut(s) | 456 |
| Psp124BI | GAGCTC | 2 cut(s) | 200, 282 |
| Psp1406I | AACGTT | 1 cut(s) | 1065 |
| Psp5II | RGGWCCY | 1 cut(s) | 765 |
| Psp6I | CCWGG | 2 cut(s) | 557, 1077 |
| PspEI | GGTNACC | 1 cut(s) | 748 |
| PspFI | CCCAGC | 1 cut(s) | 1214 |
| PspGI | CCWGG | 2 cut(s) | 557, 1077 |
| PspN4I | GGNNCC | 4 cut(s) | 766, 1075, 1213, 1682 |
| PspPI | GGNCC | 2 cut(s) | 765, 1211 |
| PspPPI | RGGWCCY | 1 cut(s) | 765 |
| PstI | CTGCAG | 2 cut(s) | 666, 1623 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1694 |
| PsuI | RGATCY | 5 cut(s) | 182, 1073, 1081, 1373, 1680 |
| PvuII | CAGCTG | 1 cut(s) | 1388 |
| RsaI | GTAC | 3 cut(s) | 265, 346, 865 |
| RsaNI | GTAC | 3 cut(s) | 264, 345, 864 |
| RseI | CAYNNNNRTG | 1 cut(s) | 227 |
| SacI | GAGCTC | 2 cut(s) | 200, 282 |
| SapI | GCTCTTC | 1 cut(s) | 287 |
| SaqAI | TTAA | 6 cut(s) | 240, 456, 696, 1041, 1127, 1563 |
| SatI | GCNGC | 4 cut(s) | 119, 1170, 1173, 1619 |
| Sau96I | GGNCC | 2 cut(s) | 765, 1211 |
| SchI | GAGTC | 1 cut(s) | 1653 |
| ScrFI | CCNGG | 2 cut(s) | 559, 1079 |
| SduI | GDGCHC | 2 cut(s) | 200, 282 |
| SfaNI | GCATC | 3 cut(s) | 219, 1189, 1408 |
| SfcI | CTRYAG | 4 cut(s) | 151, 642, 662, 1619 |
| SinI | GGWCC | 2 cut(s) | 765, 1211 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 227 |
| SmlI | CTYRAG | 4 cut(s) | 945, 1085, 1126, 1140 |
| SmoI | CTYRAG | 4 cut(s) | 945, 1085, 1126, 1140 |
| SphI | GCATGC | 1 cut(s) | 856 |
| SseBI | AGGCCT | 2 cut(s) | 557, 660 |
| SsiI | CCGC | 1 cut(s) | 1522 |
| SspMI | CTAG | 3 cut(s) | 384, 534, 1664 |
| SstI | GAGCTC | 2 cut(s) | 200, 282 |
| StuI | AGGCCT | 2 cut(s) | 557, 660 |
| StyD4I | CCNGG | 2 cut(s) | 557, 1077 |
| StyI | CCWWGG | 1 cut(s) | 222 |
| TaaI | ACNGT | 1 cut(s) | 646 |
| TaiI | ACGT | 1 cut(s) | 1068 |
| TaqI | TCGA | 5 cut(s) | 87, 349, 897, 991, 1366 |
| TfiI | GAWTC | 3 cut(s) | 38, 1160, 1589 |
| Tru1I | TTAA | 6 cut(s) | 240, 456, 696, 1041, 1127, 1563 |
| Tru9I | TTAA | 6 cut(s) | 240, 456, 696, 1041, 1127, 1563 |
| TscAI | CASTG | 4 cut(s) | 36, 970, 1239, 1410 |
| TseFI | GTSAC | 5 cut(s) | 482, 748, 821, 1378, 1446 |
| TseI | GCWGC | 4 cut(s) | 118, 1169, 1172, 1618 |
| Tsp45I | GTSAC | 5 cut(s) | 482, 748, 821, 1378, 1446 |
| TspGWI | ACGGA | 7 cut(s) | 376, 622, 768, 832, 1330, 1386, 1658 |
| TspRI | CASTG | 4 cut(s) | 36, 970, 1239, 1410 |
| Vha464I | CTTAAG | 1 cut(s) | 1126 |
| VpaK11BI | GGWCC | 2 cut(s) | 765, 1211 |
| VspI | ATTAAT | 1 cut(s) | 456 |
| XapI | RAATTY | 6 cut(s) | 244, 496, 704, 993, 1327, 1477 |
| XceI | RCATGY | 2 cut(s) | 407, 856 |
| XmiI | GTMKAC | 1 cut(s) | 412 |
| XspI | CTAG | 3 cut(s) | 384, 534, 1664 |