Prupe.5G020000_v2.0.a1

arbuscular mycorrhizal association

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
2195297 .. 2200663
5367 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G020000.2

Sequence Viewer

Length: 1707 bp
ATGGTCAATGAAGGAAATAAAGGAAGCTCAGTGAATGATTCTTTTATGAAACCAGAAAGCAGTCGGCAGAATATAATAAACTCGTTCGAGGGTCAGGTGCTTGCAAGAAGTGAGGGGCAGCAGATGGAAGGAAGAGGGCTTTCAGACTTCTATAGGAATACAAGTGAGGAGTTGATCCTGAGATCTTTTATGGAGAGCTCAGTTGCAACGCCTCTACCAACCATGGAGATGCTTGGTTTTAAGAATTTGTCTCAAAACTTTCGTACAGATAGCGAGGAGCTCTTCAAAAGCTGGCTCACAACTGGAGAGACCAATTGCTTCAACACATCAAGCATTGCACATCGTACTCGACAAGGATCACGGAGGATATCTACTGAAATTGCTAGTTTGTCTGGTCAGCAACATGTTGGTCTACTTCAAAAGAAAAGAAGCAACGATTGTTTATATCCACAAATTAATGTCATGCCTGACGAAATGTCTGGTGACAACAATCAAAATTCAATCAGGCATGGTGTTGAAAGAGGAATGCAGGCTAGTGAGTTATATTTGGCTAAGGCCTGGGTTCATAGTTCTCAGCCTATGACGAGAAGCCGATCCTCTGAATTACGGAGGAGGTATGTTGCCATGCAAAATGCTCAAACTACAGTAGGTTTGGAAGGCCTGCAGACTGCTTCAGGGAATTGCCCCAATGTAATTAAACAAGAATTTGCATTTTCAAATGCTTTCAATGATCCTTCTGTTTGTGAGGTCACCAATCAATTGGGGACCTTCATTTCTCCGTCCAATTCATCATCATCCACTTTCAACACCCCACAAATGAGTGACATGGATAAAGTTTCATCCGTGGTGAGCATGCTAAAGGGTACATTAGAGCGCAAAAAGCTTAGTAACCAGATCGAAAAAGAAGGTGTAGAAGATGATAGCTCCAATGGCCTTTTCTCTGCTCAAGAAATTATAGTCAACACTGGTTTTGATCAAGGGCAAGGGGATCGAATTCATGAACTGGCAGGAACTTTTCAGGAAGTATCCACTATCCAAGTTAACGATCATAGAATTACACAAAACGTTGAAGGATCCCTGGATCTTGAGATGGAAGGTTTTGTAAATCTCAGAAACCCCAACCCCTTAAGCAGAAACTCTCAAGAACCTTCCCAAAGTGAATCATCTGCTGCTGCACCAGTAGTTTCATCTGGCTTTGATGCGTGTGATGGTCCCAGCAATTCAAGTCAAACACTGAGCATTTGCGAAAGTTCAATGAAACGAGCTGGAAATAGGAGTTCAGAAAACGGCTCTAAATCTAAAGATTTCAGAGAACGGATAATTGGAAATTTGAAAGATGATCAAAAGAGAGGGGAGCGTTTAGATCGATACGGATCTGTGACATCAGCTGTTTTGGGTTGTGCAGTGGACAAGGAGGATGCTACAAAAAAACGCAGGGTGGAGAGGTCACGCAAAATGGCAGAGGCAAAGGAAAGGAATTCAACTCCTGTAATTCCATCAGATATACAATCTGTCTTGAAGCGGTGTGAAAATCTTGAAAAGGAAGTGCGATCCCTCAAACTTAACTTGTCCTTCATGAATAGGAAGGATTCTGAGCAAACTAAGCAGATAGAGGAGCTGCAGAAGGAAAATGAAGACCTCACGGATGAAAAAGAGCGACTCCTAGAGGAGATAGAGAGGATCCTTTCAGAAACTGGCAAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

569

Amino Acids

63.3

Weight (kDa)

5.49

Isoelectric Point (pI)

57.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 412
AciI CCGC 1 cut(s) 1522
AclI AACGTT 1 cut(s) 1065
AcsI RAATTY 6 cut(s) 244, 496, 704, 993, 1327, 1477
AcuI CTGAAG 1 cut(s) 657
AfaI GTAC 3 cut(s) 265, 346, 865
AflII CTTAAG 1 cut(s) 1126
AflIII ACRYGT 1 cut(s) 403
AhdI GACNNNNNGTC 1 cut(s) 475
AjnI CCWGG 2 cut(s) 557, 1077
AjuI GAANNNNNNNTTGG 4 cut(s) 920, 952, 1305, 1337
AluBI AGCT 9 cut(s) 27, 198, 280, 291, 883, 924, 1265, 1388, 1618
AluI AGCT 9 cut(s) 27, 198, 280, 291, 883, 924, 1265, 1388, 1618
Alw21I GWGCWC 2 cut(s) 200, 282
Alw26I GTCTC 2 cut(s) 255, 302
AlwNI CAGNNNCTG 1 cut(s) 1694
AoxI GGCC 3 cut(s) 555, 658, 931
ApeKI GCWGC 4 cut(s) 118, 1169, 1172, 1618
ApoI RAATTY 6 cut(s) 244, 496, 704, 993, 1327, 1477
AseI ATTAAT 1 cut(s) 456
AspLEI GCGC 1 cut(s) 876
AspS9I GGNCC 2 cut(s) 765, 1211
AsuHPI GGTGA 3 cut(s) 494, 742, 859
AvaII GGWCC 2 cut(s) 765, 1211
BamHI GGATCC 2 cut(s) 1073, 1680
BanII GRGCYC 2 cut(s) 200, 282
BbsI GAAGAC 1 cut(s) 1641
Bbv12I GWGCWC 2 cut(s) 200, 282
BbvI GCAGC 4 cut(s) 130, 1156, 1159, 1605
BccI CCATC 4 cut(s) 118, 1084, 1202, 1504
BceAI ACGGC 1 cut(s) 1303
BcgI CGANNNNNNTGC 2 cut(s) 971, 1005
BciT130I CCWGG 2 cut(s) 559, 1079
BciVI GTATCC 1 cut(s) 1036
BclI TGATCA 2 cut(s) 973, 1339
BcoDI GTCTC 2 cut(s) 255, 302
BfaI CTAG 3 cut(s) 384, 534, 1664
BfmI CTRYAG 4 cut(s) 151, 642, 662, 1619
BfrI CTTAAG 1 cut(s) 1126
BfuI GTATCC 1 cut(s) 1036
BglII AGATCT 1 cut(s) 182
BisI GCNGC 4 cut(s) 119, 1170, 1173, 1619
BlsI GCNGC 4 cut(s) 120, 1171, 1174, 1620
Bme1390I CCNGG 2 cut(s) 559, 1079
Bme18I GGWCC 2 cut(s) 765, 1211
BmeRI GACNNNNNGTC 1 cut(s) 475
BmgT120I GGNCC 2 cut(s) 765, 1211
BmiI GGNNCC 4 cut(s) 766, 1075, 1213, 1682
BmrFI CCNGG 2 cut(s) 559, 1079
BmsI GCATC 3 cut(s) 219, 1189, 1408
BpiI GAAGAC 1 cut(s) 1641
BpmI CTGGAG 1 cut(s) 324
Bpu10I CCTNAGC 1 cut(s) 552
BpuEI CTTGAG 3 cut(s) 930, 1106, 1125
Bsa29I ATCGAT 1 cut(s) 1366
BsaBI GATNNNNATC 1 cut(s) 1372
BsaI GGTCTC 1 cut(s) 302
BsaJI CCNNGG 4 cut(s) 222, 558, 843, 1077
Bse1I ACTGG 5 cut(s) 307, 970, 1008, 1178, 1699
Bse3DI GCAATG 1 cut(s) 333
Bse8I GATNNNNATC 1 cut(s) 1372
BseBI CCWGG 2 cut(s) 559, 1079
BseCI ATCGAT 1 cut(s) 1366
BseDI CCNNGG 4 cut(s) 222, 558, 843, 1077
BseGI GGATG 4 cut(s) 794, 839, 1423, 1651
BseJI GATNNNNATC 1 cut(s) 1372
BseMI GCAATG 1 cut(s) 333
BseMII CTCAG 7 cut(s) 42, 170, 213, 587, 1123, 1226, 1584
BseNI ACTGG 5 cut(s) 307, 970, 1008, 1178, 1699
BseRI GAGGAG 5 cut(s) 182, 290, 625, 1628, 1682
BseXI GCAGC 4 cut(s) 130, 1156, 1159, 1605
BseYI CCCAGC 1 cut(s) 1214
BsgI GTGCAG 2 cut(s) 1158, 1422
BshFI GGCC 3 cut(s) 557, 660, 933
BshVI ATCGAT 1 cut(s) 1366
BsiHKAI GWGCWC 2 cut(s) 200, 282
BslFI GGGAC 2 cut(s) 778, 1197
BsmAI GTCTC 2 cut(s) 255, 302
BsmFI GGGAC 2 cut(s) 778, 1197
BsmI GAATGC 1 cut(s) 531
BsnI GGCC 3 cut(s) 557, 660, 933
Bso31I GGTCTC 1 cut(s) 302
Bsp1286I GDGCHC 2 cut(s) 200, 282
Bsp19I CCATGG 1 cut(s) 222
BspACI CCGC 1 cut(s) 1522
BspANI GGCC 3 cut(s) 557, 660, 933
BspCNI CTCAG 7 cut(s) 41, 171, 212, 586, 1122, 1227, 1585
BspDI ATCGAT 1 cut(s) 1366
BspHI TCATGA 2 cut(s) 997, 1575
BspLI GGNNCC 4 cut(s) 766, 1075, 1213, 1682
BspMAI CTGCAG 2 cut(s) 666, 1623
BspQI GCTCTTC 1 cut(s) 287
BspTI CTTAAG 1 cut(s) 1126
BspTNI GGTCTC 1 cut(s) 302
BsrDI GCAATG 1 cut(s) 333
BsrI ACTGG 5 cut(s) 307, 970, 1008, 1178, 1699
BssECI CCNNGG 4 cut(s) 222, 558, 843, 1077
BssT1I CCWWGG 1 cut(s) 222
Bst2UI CCWGG 2 cut(s) 559, 1079
Bst4CI ACNGT 1 cut(s) 646
Bst6I CTCTTC 2 cut(s) 127, 287
BstAFI CTTAAG 1 cut(s) 1126
BstC8I GCNNGC 5 cut(s) 102, 293, 531, 662, 854
BstDSI CCRYGG 2 cut(s) 222, 843
BstEII GGTNACC 1 cut(s) 748
BstF5I GGATG 4 cut(s) 794, 839, 1423, 1651
BstHHI GCGC 1 cut(s) 876
BstMAI GTCTC 2 cut(s) 255, 302
BstMWI GCNNNNNNNGC 3 cut(s) 880, 930, 1603
BstNI CCWGG 2 cut(s) 559, 1079
BstNSI RCATGY 2 cut(s) 407, 856
BstPI GGTNACC 1 cut(s) 748
BstSCI CCNGG 2 cut(s) 557, 1077
BstSFI CTRYAG 4 cut(s) 151, 642, 662, 1619
BstV1I GCAGC 4 cut(s) 130, 1156, 1159, 1605
BstV2I GAAGAC 1 cut(s) 1641
BstX2I RGATCY 5 cut(s) 182, 1073, 1081, 1373, 1680
BstXI CCANNNNNNTGG 1 cut(s) 760
BstYI RGATCY 5 cut(s) 182, 1073, 1081, 1373, 1680
Bsu15I ATCGAT 1 cut(s) 1366
BsuI GTATCC 1 cut(s) 1036
BsuRI GGCC 3 cut(s) 557, 660, 933
BsuTUI ATCGAT 1 cut(s) 1366
BtgI CCRYGG 2 cut(s) 222, 843
BtsCI GGATG 4 cut(s) 794, 839, 1423, 1651
BtsI GCAGTG 1 cut(s) 1410
BtsIMutI CAGTG 4 cut(s) 36, 963, 1232, 1410
Cac8I GCNNGC 5 cut(s) 102, 293, 531, 662, 854
CaiI CAGNNNCTG 1 cut(s) 1694
CciI TCATGA 2 cut(s) 997, 1575
CfoI GCGC 1 cut(s) 876
Cfr13I GGNCC 2 cut(s) 765, 1211
ClaI ATCGAT 1 cut(s) 1366
Csp6I GTAC 3 cut(s) 264, 345, 864
CviAII CATG 9 cut(s) 223, 404, 463, 509, 625, 826, 853, 998, 1576
CviQI GTAC 3 cut(s) 264, 345, 864
DriI GACNNNNNGTC 1 cut(s) 475
Eam1104I CTCTTC 2 cut(s) 127, 287
Eam1105I GACNNNNNGTC 1 cut(s) 475
EarI CTCTTC 2 cut(s) 127, 287
Ecl136II GAGCTC 2 cut(s) 198, 280
Eco130I CCWWGG 1 cut(s) 222
Eco147I AGGCCT 2 cut(s) 557, 660
Eco24I GRGCYC 2 cut(s) 200, 282
Eco31I GGTCTC 1 cut(s) 302
Eco32I GATATC 1 cut(s) 369
Eco47I GGWCC 2 cut(s) 765, 1211
Eco53kI GAGCTC 2 cut(s) 198, 280
Eco57I CTGAAG 1 cut(s) 657
Eco91I GGTNACC 1 cut(s) 748
EcoICRI GAGCTC 2 cut(s) 198, 280
EcoO109I RGGNCCY 1 cut(s) 765
EcoO65I GGTNACC 1 cut(s) 748
EcoRI GAATTC 2 cut(s) 993, 1477
EcoRII CCWGG 2 cut(s) 557, 1077
EcoRV GATATC 1 cut(s) 369
EcoT14I CCWWGG 1 cut(s) 222
EcoT38I GRGCYC 2 cut(s) 200, 282
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 9 cut(s) 226, 407, 466, 512, 628, 829, 856, 1001, 1579
FaqI GGGAC 2 cut(s) 778, 1197
FatI CATG 9 cut(s) 222, 403, 462, 508, 624, 825, 852, 997, 1575
FbaI TGATCA 2 cut(s) 973, 1339
FblI GTMKAC 1 cut(s) 412
Fnu4HI GCNGC 4 cut(s) 119, 1170, 1173, 1619
FokI GGATG 4 cut(s) 781, 826, 1430, 1658
FriOI GRGCYC 2 cut(s) 200, 282
Fsp4HI GCNGC 4 cut(s) 119, 1170, 1173, 1619
FspBI CTAG 3 cut(s) 384, 534, 1664
GlaI GCGC 1 cut(s) 875
GluI GCNGC 4 cut(s) 119, 1170, 1173, 1619
GsaI CCCAGC 1 cut(s) 1218
GsuI CTGGAG 1 cut(s) 324
HaeIII GGCC 3 cut(s) 557, 660, 933
HhaI GCGC 1 cut(s) 876
Hin1II CATG 9 cut(s) 226, 407, 466, 512, 628, 829, 856, 1001, 1579
Hin6I GCGC 1 cut(s) 874
HinP1I GCGC 1 cut(s) 874
HincII GTYRAC 2 cut(s) 961, 1042
HindII GTYRAC 2 cut(s) 961, 1042
HindIII AAGCTT 1 cut(s) 881
HinfI GANTC 4 cut(s) 38, 1160, 1589, 1659
HpaI GTTAAC 1 cut(s) 1042
HphI GGTGA 3 cut(s) 494, 742, 859
Hpy166II GTNNAC 4 cut(s) 413, 961, 1042, 1408
Hpy188I TCNGA 8 cut(s) 145, 601, 1112, 1282, 1310, 1501, 1594, 1690
Hpy188III TCNNGA 9 cut(s) 178, 947, 998, 1019, 1085, 1142, 1516, 1535, 1576
Hpy8I GTNNAC 4 cut(s) 413, 961, 1042, 1408
HpyCH4III ACNGT 1 cut(s) 646
HpyCH4IV ACGT 1 cut(s) 1065
HpyF10VI GCNNNNNNNGC 3 cut(s) 880, 930, 1603
HpySE526I ACGT 1 cut(s) 1065
Hsp92II CATG 9 cut(s) 226, 407, 466, 512, 628, 829, 856, 1001, 1579
HspAI GCGC 1 cut(s) 874
Ksp22I TGATCA 2 cut(s) 973, 1339
KspAI GTTAAC 1 cut(s) 1042
LguI GCTCTTC 1 cut(s) 287
LmnI GCTCC 4 cut(s) 277, 929, 1354, 1615
Lsp1109I GCAGC 4 cut(s) 130, 1156, 1159, 1605
LweI GCATC 3 cut(s) 219, 1189, 1408
MaeI CTAG 3 cut(s) 384, 534, 1664
MaeII ACGT 1 cut(s) 1065
MaeIII GTNAC 6 cut(s) 482, 748, 821, 887, 1378, 1446
MboII GAAGA 4 cut(s) 144, 274, 926, 1646
MfeI CAATTG 2 cut(s) 313, 758
MflI RGATCY 5 cut(s) 182, 1073, 1081, 1373, 1680
MhlI GDGCHC 2 cut(s) 200, 282
MlyI GAGTC 1 cut(s) 1653
MseI TTAA 6 cut(s) 240, 456, 696, 1041, 1127, 1563
MslI CAYNNNNRTG 1 cut(s) 227
MspA1I CMGCKG 1 cut(s) 1388
MspCI CTTAAG 1 cut(s) 1126
MspR9I CCNGG 2 cut(s) 559, 1079
MunI CAATTG 2 cut(s) 313, 758
Mva1269I GAATGC 1 cut(s) 531
MvaI CCWGG 2 cut(s) 559, 1079
MwoI GCNNNNNNNGC 3 cut(s) 880, 930, 1603
NcoI CCATGG 1 cut(s) 222
NlaIII CATG 9 cut(s) 226, 407, 466, 512, 628, 829, 856, 1001, 1579
NlaIV GGNNCC 4 cut(s) 766, 1075, 1213, 1682
NmuCI GTSAC 5 cut(s) 482, 748, 821, 1378, 1446
NspI RCATGY 2 cut(s) 407, 856
PaeI GCATGC 1 cut(s) 856
PagI TCATGA 2 cut(s) 997, 1575
PceI AGGCCT 2 cut(s) 557, 660
PciI ACATGT 1 cut(s) 403
PciSI GCTCTTC 1 cut(s) 287
PctI GAATGC 1 cut(s) 531
PfeI GAWTC 3 cut(s) 38, 1160, 1589
PkrI GCNGC 4 cut(s) 120, 1171, 1174, 1620
PleI GAGTC 1 cut(s) 1653
PpsI GAGTC 1 cut(s) 1653
PpuMI RGGWCCY 1 cut(s) 765
PscI ACATGT 1 cut(s) 403
PshBI ATTAAT 1 cut(s) 456
Psp124BI GAGCTC 2 cut(s) 200, 282
Psp1406I AACGTT 1 cut(s) 1065
Psp5II RGGWCCY 1 cut(s) 765
Psp6I CCWGG 2 cut(s) 557, 1077
PspEI GGTNACC 1 cut(s) 748
PspFI CCCAGC 1 cut(s) 1214
PspGI CCWGG 2 cut(s) 557, 1077
PspN4I GGNNCC 4 cut(s) 766, 1075, 1213, 1682
PspPI GGNCC 2 cut(s) 765, 1211
PspPPI RGGWCCY 1 cut(s) 765
PstI CTGCAG 2 cut(s) 666, 1623
PstNI CAGNNNCTG 1 cut(s) 1694
PsuI RGATCY 5 cut(s) 182, 1073, 1081, 1373, 1680
PvuII CAGCTG 1 cut(s) 1388
RsaI GTAC 3 cut(s) 265, 346, 865
RsaNI GTAC 3 cut(s) 264, 345, 864
RseI CAYNNNNRTG 1 cut(s) 227
SacI GAGCTC 2 cut(s) 200, 282
SapI GCTCTTC 1 cut(s) 287
SaqAI TTAA 6 cut(s) 240, 456, 696, 1041, 1127, 1563
SatI GCNGC 4 cut(s) 119, 1170, 1173, 1619
Sau96I GGNCC 2 cut(s) 765, 1211
SchI GAGTC 1 cut(s) 1653
ScrFI CCNGG 2 cut(s) 559, 1079
SduI GDGCHC 2 cut(s) 200, 282
SfaNI GCATC 3 cut(s) 219, 1189, 1408
SfcI CTRYAG 4 cut(s) 151, 642, 662, 1619
SinI GGWCC 2 cut(s) 765, 1211
SmiMI CAYNNNNRTG 1 cut(s) 227
SmlI CTYRAG 4 cut(s) 945, 1085, 1126, 1140
SmoI CTYRAG 4 cut(s) 945, 1085, 1126, 1140
SphI GCATGC 1 cut(s) 856
SseBI AGGCCT 2 cut(s) 557, 660
SsiI CCGC 1 cut(s) 1522
SspMI CTAG 3 cut(s) 384, 534, 1664
SstI GAGCTC 2 cut(s) 200, 282
StuI AGGCCT 2 cut(s) 557, 660
StyD4I CCNGG 2 cut(s) 557, 1077
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 1 cut(s) 646
TaiI ACGT 1 cut(s) 1068
TaqI TCGA 5 cut(s) 87, 349, 897, 991, 1366
TfiI GAWTC 3 cut(s) 38, 1160, 1589
Tru1I TTAA 6 cut(s) 240, 456, 696, 1041, 1127, 1563
Tru9I TTAA 6 cut(s) 240, 456, 696, 1041, 1127, 1563
TscAI CASTG 4 cut(s) 36, 970, 1239, 1410
TseFI GTSAC 5 cut(s) 482, 748, 821, 1378, 1446
TseI GCWGC 4 cut(s) 118, 1169, 1172, 1618
Tsp45I GTSAC 5 cut(s) 482, 748, 821, 1378, 1446
TspGWI ACGGA 7 cut(s) 376, 622, 768, 832, 1330, 1386, 1658
TspRI CASTG 4 cut(s) 36, 970, 1239, 1410
Vha464I CTTAAG 1 cut(s) 1126
VpaK11BI GGWCC 2 cut(s) 765, 1211
VspI ATTAAT 1 cut(s) 456
XapI RAATTY 6 cut(s) 244, 496, 704, 993, 1327, 1477
XceI RCATGY 2 cut(s) 407, 856
XmiI GTMKAC 1 cut(s) 412
XspI CTAG 3 cut(s) 384, 534, 1664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.