MD06G1015600.v1.1

arbuscular mycorrhizal association

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Forward (+)
1959232 .. 1964120
4889 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1015600.v1.1.491

Sequence Viewer

Length: 1560 bp
ATGGAAGGAAGAAGGCTTTCGGACTTCTATAGGAATACAAGTGAGGAGTTGATCCTGAGATCTTATATGGAGAGCCCAGTTGCAATGCCTCTACCAACCATGGAGATACTTGGTTTTAAGAATTTGTCTCAAAACTTTCGTACTGATAGCGAGGAACTCTTCAAAAGCTGGCTCACAAATGGAGAGGCAAGCAGCCATACCAATTGCTATAATTCATCAAGCATTGCACATCGTACCAGAACACGGATGATTTCTACTGAAATAGCTAGCTTGCCGGGTCAGCAACATGTCGGTATACTTCAAAAGAAAAGAAGCAATGACTGTTTGTATCCACCAATTAATACCATGCCTGATGAAATCTCAGGTGACAACAATCAAAGTTCAATCAGGCATGGTGTTGAACCAGGAATACAAGCTAGCGAGTTATACTTGGCTAAGGCCTGGTTTCACAGTTCTCAACCAATGACAAGAAGCCGATCCTCTGAATTACGGAGGAGGTATGTCGCTATGCAAAACGCTCAAATGCCAGCAGGTCTGGAAGTCATGCAGACTGCTTCAGGGAATAGCAATCTAGCAAATCAGGATTTTGCGTTTTCAAATGGTTTCAATGACCCTTCTATTTGTGAGGTCAGCAACCAATTGGCGACCTTCATTTCTCCATCGAATTCATCATCGTCCACTTTCAACACCCCACAAATGAGTGAAATGGATAAAGTTTCATCTGTGGTGAGCATGCTAAAGGGTACCTTGGAGCGCAAAAAGCTTAGCAATCAGATCAAGAAACAAAGTGTGGATGATGATAGATCCAATGGACGTTTCTCTGTTCAAGAAGTTATTGTCAACACCGGTTTTGATCAAGGGGAAAGGGATCAACTTCATGGTATGGCAGCTGGAACATTTCCAGAAGTATCCACTATCCAAGTTAACGGTCATAGAATTACACAAAAAGTTGAAGGTTCACTGGATCTTCAGATGGAAGGTTTTGTAAATATCACAAACCCAAATCCCGTAAGCAGGACTTCTCAAGAACGTTCCCAAAGTGAATCATCTGCTGCTGCACCAGTAGTTTCATCTGGTTTTGATGCATGGGACGGTCCCAGCAATTCAGGTCAAACCCTGAGCATTTGTGAAAGTTCAATCAAACGAGCTGAAAGCTCTAGATCCAAAGATGTCAGAGAACGGAAAATTGGAAATTTGAAAGATGACCAAAAGAGTGGGAAACGTTTAGAGCGCTACGGATCAGTGACATCGGCTGTTTCAGACAAGGAGGATGCAACAAAAAAACGCAGGGTGGAGAGGTCACGGAAAATGGCGGAGGCAAAGGGAAGGAACTCAACTCCAGTAATTCCATCTGATATGCAATCTGTCTTGAAGCGGTGCGAAAATCTTGAAAAGGAAGTGCGATCACTCAAACTGAACCTGTCCTTCATGAATAGGAAGGATTCTGAGCAGACTAAGCAGATAGAGGAGTTGCAGAAGCAAAATGAAGATCTAATGGATGAAAAAGAACGGCTCGTAGAGGAGATAGAGAGAGTCCTTTCAGATACTGGCAATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

520

Amino Acids

58.03

Weight (kDa)

6.71

Isoelectric Point (pI)

60.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 521
Acc65I GGTACC 1 cut(s) 743
AccB1I GGYRCC 1 cut(s) 743
AccI GTMKAC 1 cut(s) 295
AciI CCGC 2 cut(s) 1313, 1375
AclI AACGTT 2 cut(s) 1030, 1222
AclWI GGATC 7 cut(s) 46, 471, 798, 876, 972, 1155, 1246
AcsI RAATTY 3 cut(s) 121, 664, 1192
AcuI CTGAAG 2 cut(s) 540, 953
AfaI GTAC 3 cut(s) 142, 235, 745
AfeI AGCGCT 1 cut(s) 1232
AfiI CCNNNNNNNGG 2 cut(s) 243, 1014
AflIII ACRYGT 1 cut(s) 286
AgeI ACCGGT 1 cut(s) 845
AjnI CCWGG 2 cut(s) 403, 440
AjuI GAANNNNNNNTTGG 4 cut(s) 800, 832, 1170, 1202
AluBI AGCT 8 cut(s) 168, 266, 270, 416, 763, 890, 1148, 1155
AluI AGCT 8 cut(s) 168, 266, 270, 416, 763, 890, 1148, 1155
Alw26I GTCTC 1 cut(s) 132
AlwI GGATC 7 cut(s) 46, 471, 798, 876, 972, 1155, 1246
AlwNI CAGNNNCTG 1 cut(s) 1547
Aor51HI AGCGCT 1 cut(s) 1232
AoxI GGCC 1 cut(s) 438
ApeKI GCWGC 4 cut(s) 192, 887, 1052, 1055
ApoI RAATTY 3 cut(s) 121, 664, 1192
AseI ATTAAT 1 cut(s) 339
AsiGI ACCGGT 1 cut(s) 845
Asp700I GAANNNNTTC 1 cut(s) 16
Asp718I GGTACC 1 cut(s) 743
AspLEI GCGC 2 cut(s) 756, 1233
AspS9I GGNCC 1 cut(s) 1094
AsuC2I CCSGG 1 cut(s) 276
AsuHPI GGTGA 2 cut(s) 377, 739
AsuNHI GCTAGC 2 cut(s) 266, 416
AvaII GGWCC 1 cut(s) 1094
BanI GGYRCC 1 cut(s) 743
BanII GRGCYC 1 cut(s) 77
BbvI GCAGC 4 cut(s) 204, 899, 1039, 1042
BccI CCATC 3 cut(s) 667, 967, 1357
BceAI ACGGC 1 cut(s) 1526
BciT130I CCWGG 2 cut(s) 405, 442
BciVI GTATCC 2 cut(s) 339, 919
BclI TGATCA 1 cut(s) 853
BcnI CCSGG 1 cut(s) 276
BcoDI GTCTC 1 cut(s) 132
BfaI CTAG 4 cut(s) 267, 417, 572, 1158
BfmI CTRYAG 1 cut(s) 28
BfoI RGCGCY 1 cut(s) 1234
BfuAI ACCTGC 1 cut(s) 521
BfuI GTATCC 2 cut(s) 339, 919
BglII AGATCT 2 cut(s) 59, 1489
BisI GCNGC 4 cut(s) 193, 888, 1053, 1056
BlpI GCTNAGC 1 cut(s) 764
BlsI GCNGC 4 cut(s) 194, 889, 1054, 1057
Bme1390I CCNGG 3 cut(s) 276, 405, 442
Bme18I GGWCC 1 cut(s) 1094
BmgT120I GGNCC 1 cut(s) 1094
BmiI GGNNCC 2 cut(s) 745, 1096
BmrFI CCNGG 3 cut(s) 276, 405, 442
BmrI ACTGGG 1 cut(s) 71
BmsI GCATC 2 cut(s) 1072, 1261
BmtI GCTAGC 2 cut(s) 270, 420
BmuI ACTGGG 1 cut(s) 71
BpmI CTGGAG 1 cut(s) 1323
Bpu10I CCTNAGC 2 cut(s) 435, 1118
Bpu1102I GCTNAGC 1 cut(s) 764
BpuEI CTTGAG 1 cut(s) 1008
BpuMI CCSGG 1 cut(s) 276
BsaJI CCNNGG 2 cut(s) 99, 747
BsaWI WCCGGW 1 cut(s) 845
Bsc4I CCNNNNNNNGG 2 cut(s) 243, 1014
Bse118I RCCGGY 1 cut(s) 845
Bse1I ACTGG 5 cut(s) 77, 966, 1061, 1340, 1552
Bse3DI GCAATG 4 cut(s) 90, 222, 322, 1558
BseBI CCWGG 2 cut(s) 405, 442
BseDI CCNNGG 2 cut(s) 99, 747
BseGI GGATG 4 cut(s) 252, 799, 1276, 1504
BseLI CCNNNNNNNGG 2 cut(s) 243, 1014
BseMI GCAATG 4 cut(s) 90, 222, 322, 1558
BseMII CTCAG 4 cut(s) 47, 375, 1109, 1437
BseNI ACTGG 5 cut(s) 77, 966, 1061, 1340, 1552
BseRI GAGGAG 4 cut(s) 59, 508, 1481, 1535
BseXI GCAGC 4 cut(s) 204, 899, 1039, 1042
BseYI CCCAGC 1 cut(s) 1097
BsgI GTGCAG 1 cut(s) 1041
BshFI GGCC 1 cut(s) 440
BshNI GGYRCC 1 cut(s) 743
BshTI ACCGGT 1 cut(s) 845
BsiSI CCGG 2 cut(s) 275, 846
BslFI GGGAC 2 cut(s) 1080, 1103
BslI CCNNNNNNNGG 2 cut(s) 243, 1014
BsmAI GTCTC 1 cut(s) 132
BsmFI GGGAC 2 cut(s) 1080, 1103
BsnI GGCC 1 cut(s) 440
Bsp1286I GDGCHC 1 cut(s) 77
Bsp1720I GCTNAGC 1 cut(s) 764
Bsp19I CCATGG 1 cut(s) 99
BspACI CCGC 2 cut(s) 1313, 1375
BspANI GGCC 1 cut(s) 440
BspCNI CTCAG 4 cut(s) 48, 374, 1110, 1438
BspHI TCATGA 1 cut(s) 1428
BspLI GGNNCC 2 cut(s) 745, 1096
BspMI ACCTGC 1 cut(s) 521
BspOI GCTAGC 2 cut(s) 270, 420
BspPI GGATC 7 cut(s) 46, 471, 798, 876, 972, 1155, 1246
BspT107I GGYRCC 1 cut(s) 743
BsrDI GCAATG 4 cut(s) 90, 222, 322, 1558
BsrFI RCCGGY 1 cut(s) 845
BsrI ACTGG 5 cut(s) 77, 966, 1061, 1340, 1552
BssAI RCCGGY 1 cut(s) 845
BssECI CCNNGG 2 cut(s) 99, 747
BssNAI GTATAC 1 cut(s) 296
BssT1I CCWWGG 2 cut(s) 99, 747
Bst1107I GTATAC 1 cut(s) 296
Bst2UI CCWGG 2 cut(s) 405, 442
Bst4CI ACNGT 4 cut(s) 323, 452, 929, 1094
Bst6I CTCTTC 1 cut(s) 164
BstC8I GCNNGC 7 cut(s) 170, 190, 268, 272, 418, 528, 734
BstDEI CTNAG 7 cut(s) 56, 361, 435, 764, 1118, 1446, 1455
BstDSI CCRYGG 1 cut(s) 99
BstF5I GGATG 4 cut(s) 252, 799, 1276, 1504
BstH2I RGCGCY 1 cut(s) 1234
BstHHI GCGC 2 cut(s) 756, 1233
BstMAI GTCTC 1 cut(s) 132
BstMWI GCNNNNNNNGC 3 cut(s) 280, 760, 1456
BstNI CCWGG 2 cut(s) 405, 442
BstNSI RCATGY 2 cut(s) 290, 736
BstSCI CCNGG 3 cut(s) 274, 403, 440
BstSFI CTRYAG 1 cut(s) 28
BstV1I GCAGC 4 cut(s) 204, 899, 1039, 1042
BstX2I RGATCY 5 cut(s) 59, 803, 964, 1160, 1489
BstXI CCANNNNNNTGG 1 cut(s) 1214
BstYI RGATCY 5 cut(s) 59, 803, 964, 1160, 1489
BstZ17I GTATAC 1 cut(s) 296
BsuI GTATCC 2 cut(s) 339, 919
BsuRI GGCC 1 cut(s) 440
BtgI CCRYGG 1 cut(s) 99
BtsCI GGATG 4 cut(s) 252, 799, 1276, 1504
BtsIMutI CAGTG 2 cut(s) 959, 1248
BveI ACCTGC 1 cut(s) 521
Cac8I GCNNGC 7 cut(s) 170, 190, 268, 272, 418, 528, 734
CaiI CAGNNNCTG 1 cut(s) 1547
CciI TCATGA 1 cut(s) 1428
CfoI GCGC 2 cut(s) 756, 1233
Cfr10I RCCGGY 1 cut(s) 845
Cfr13I GGNCC 1 cut(s) 1094
Csp6I GTAC 3 cut(s) 141, 234, 744
CspAI ACCGGT 1 cut(s) 845
CviAII CATG 9 cut(s) 100, 287, 346, 392, 544, 733, 878, 1086, 1429
CviQI GTAC 3 cut(s) 141, 234, 744
DdeI CTNAG 7 cut(s) 56, 361, 435, 764, 1118, 1446, 1455
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
EciI GGCGGA 1 cut(s) 1328
Eco130I CCWWGG 2 cut(s) 99, 747
Eco147I AGGCCT 1 cut(s) 440
Eco24I GRGCYC 1 cut(s) 77
Eco47I GGWCC 1 cut(s) 1094
Eco47III AGCGCT 1 cut(s) 1232
Eco57I CTGAAG 2 cut(s) 540, 953
EcoRI GAATTC 1 cut(s) 664
EcoRII CCWGG 2 cut(s) 403, 440
EcoT14I CCWWGG 2 cut(s) 99, 747
EcoT22I ATGCAT 1 cut(s) 1087
EcoT38I GRGCYC 1 cut(s) 77
ErhI CCWWGG 2 cut(s) 99, 747
FaeI CATG 9 cut(s) 103, 290, 349, 395, 547, 736, 881, 1089, 1432
FalI AAGNNNNNCTT 4 cut(s) 731, 763, 1003, 1035
FaqI GGGAC 2 cut(s) 1080, 1103
FatI CATG 9 cut(s) 99, 286, 345, 391, 543, 732, 877, 1085, 1428
FbaI TGATCA 1 cut(s) 853
FblI GTMKAC 1 cut(s) 295
Fnu4HI GCNGC 4 cut(s) 193, 888, 1053, 1056
FokI GGATG 4 cut(s) 259, 806, 1283, 1511
FriOI GRGCYC 1 cut(s) 77
Fsp4HI GCNGC 4 cut(s) 193, 888, 1053, 1056
FspBI CTAG 4 cut(s) 267, 417, 572, 1158
GlaI GCGC 2 cut(s) 755, 1232
GluI GCNGC 4 cut(s) 193, 888, 1053, 1056
GsaI CCCAGC 1 cut(s) 1101
GsuI CTGGAG 1 cut(s) 1323
HaeII RGCGCY 1 cut(s) 1234
HaeIII GGCC 1 cut(s) 440
HapII CCGG 2 cut(s) 275, 846
HhaI GCGC 2 cut(s) 756, 1233
Hin1II CATG 9 cut(s) 103, 290, 349, 395, 547, 736, 881, 1089, 1432
Hin6I GCGC 2 cut(s) 754, 1231
HinP1I GCGC 2 cut(s) 754, 1231
HincII GTYRAC 2 cut(s) 841, 925
HindII GTYRAC 2 cut(s) 841, 925
HindIII AAGCTT 1 cut(s) 761
HinfI GANTC 3 cut(s) 1043, 1442, 1533
HpaI GTTAAC 1 cut(s) 925
HpaII CCGG 2 cut(s) 275, 846
HphI GGTGA 2 cut(s) 377, 739
Hpy166II GTNNAC 5 cut(s) 296, 678, 841, 925, 959
Hpy188I TCNGA 9 cut(s) 22, 484, 774, 972, 1175, 1261, 1354, 1447, 1543
Hpy8I GTNNAC 5 cut(s) 296, 678, 841, 925, 959
HpyAV CCTTC 8 cut(s) 6, 624, 658, 947, 971, 1320, 1432, 1435
HpyCH4III ACNGT 4 cut(s) 323, 452, 929, 1094
HpyCH4IV ACGT 3 cut(s) 814, 1030, 1222
HpyCH4V TGCA 9 cut(s) 83, 227, 511, 547, 1058, 1085, 1274, 1360, 1474
HpyF10VI GCNNNNNNNGC 3 cut(s) 280, 760, 1456
HpyF3I CTNAG 7 cut(s) 56, 361, 435, 764, 1118, 1446, 1455
HpySE526I ACGT 3 cut(s) 814, 1030, 1222
Hsp92II CATG 9 cut(s) 103, 290, 349, 395, 547, 736, 881, 1089, 1432
HspAI GCGC 2 cut(s) 754, 1231
KpnI GGTACC 1 cut(s) 747
Ksp22I TGATCA 1 cut(s) 853
KspAI GTTAAC 1 cut(s) 925
LmnI GCTCC 1 cut(s) 751
Lsp1109I GCAGC 4 cut(s) 204, 899, 1039, 1042
LweI GCATC 2 cut(s) 1072, 1261
MaeI CTAG 4 cut(s) 267, 417, 572, 1158
MaeII ACGT 3 cut(s) 814, 1030, 1222
MaeIII GTNAC 3 cut(s) 365, 1243, 1299
MboII GAAGA 4 cut(s) 21, 151, 959, 1499
MfeI CAATTG 2 cut(s) 202, 638
MflI RGATCY 5 cut(s) 59, 803, 964, 1160, 1489
MhlI GDGCHC 1 cut(s) 77
MlyI GAGTC 1 cut(s) 1542
Mph1103I ATGCAT 1 cut(s) 1087
MroXI GAANNNNTTC 1 cut(s) 16
MseI TTAA 3 cut(s) 117, 339, 924
MspA1I CMGCKG 1 cut(s) 890
MspI CCGG 2 cut(s) 275, 846
MspR9I CCNGG 3 cut(s) 276, 405, 442
MunI CAATTG 2 cut(s) 202, 638
MvaI CCWGG 2 cut(s) 405, 442
MwoI GCNNNNNNNGC 3 cut(s) 280, 760, 1456
NciI CCSGG 1 cut(s) 276
NcoI CCATGG 1 cut(s) 99
NheI GCTAGC 2 cut(s) 266, 416
NlaIII CATG 9 cut(s) 103, 290, 349, 395, 547, 736, 881, 1089, 1432
NlaIV GGNNCC 2 cut(s) 745, 1096
NmuCI GTSAC 3 cut(s) 365, 1243, 1299
NsiI ATGCAT 1 cut(s) 1087
NspI RCATGY 2 cut(s) 290, 736
PaeI GCATGC 1 cut(s) 736
PagI TCATGA 1 cut(s) 1428
PceI AGGCCT 1 cut(s) 440
PciI ACATGT 1 cut(s) 286
PdmI GAANNNNTTC 1 cut(s) 16
PfeI GAWTC 2 cut(s) 1043, 1442
PinAI ACCGGT 1 cut(s) 845
PkrI GCNGC 4 cut(s) 194, 889, 1054, 1057
PleI GAGTC 1 cut(s) 1541
PpsI GAGTC 1 cut(s) 1541
PscI ACATGT 1 cut(s) 286
PshBI ATTAAT 1 cut(s) 339
Psp1406I AACGTT 2 cut(s) 1030, 1222
Psp6I CCWGG 2 cut(s) 403, 440
PspFI CCCAGC 1 cut(s) 1097
PspGI CCWGG 2 cut(s) 403, 440
PspN4I GGNNCC 2 cut(s) 745, 1096
PspPI GGNCC 1 cut(s) 1094
PsrI GAACNNNNNNTAC 2 cut(s) 393, 425
PstNI CAGNNNCTG 1 cut(s) 1547
PsuI RGATCY 5 cut(s) 59, 803, 964, 1160, 1489
PvuII CAGCTG 1 cut(s) 890
RsaI GTAC 3 cut(s) 142, 235, 745
RsaNI GTAC 3 cut(s) 141, 234, 744
SaqAI TTAA 3 cut(s) 117, 339, 924
SatI GCNGC 4 cut(s) 193, 888, 1053, 1056
Sau96I GGNCC 1 cut(s) 1094
SchI GAGTC 1 cut(s) 1542
ScrFI CCNGG 3 cut(s) 276, 405, 442
SduI GDGCHC 1 cut(s) 77
SfaNI GCATC 2 cut(s) 1072, 1261
SfcI CTRYAG 1 cut(s) 28
SinI GGWCC 1 cut(s) 1094
SmlI CTYRAG 1 cut(s) 1023
SmoI CTYRAG 1 cut(s) 1023
SphI GCATGC 1 cut(s) 736
SseBI AGGCCT 1 cut(s) 440
SsiI CCGC 2 cut(s) 1313, 1375
SspMI CTAG 4 cut(s) 267, 417, 572, 1158
StuI AGGCCT 1 cut(s) 440
StyD4I CCNGG 3 cut(s) 274, 403, 440
StyI CCWWGG 2 cut(s) 99, 747
TaaI ACNGT 4 cut(s) 323, 452, 929, 1094
TaiI ACGT 3 cut(s) 817, 1033, 1225
TaqI TCGA 1 cut(s) 662
TfiI GAWTC 2 cut(s) 1043, 1442
Tru1I TTAA 3 cut(s) 117, 339, 924
Tru9I TTAA 3 cut(s) 117, 339, 924
TscAI CASTG 2 cut(s) 966, 1248
TseFI GTSAC 3 cut(s) 365, 1243, 1299
TseI GCWGC 4 cut(s) 192, 887, 1052, 1055
Tsp45I GTSAC 3 cut(s) 365, 1243, 1299
TspGWI ACGGA 5 cut(s) 259, 505, 1195, 1251, 1318
TspRI CASTG 2 cut(s) 966, 1248
VpaK11BI GGWCC 1 cut(s) 1094
VspI ATTAAT 1 cut(s) 339
XapI RAATTY 3 cut(s) 121, 664, 1192
XbaI TCTAGA 1 cut(s) 1157
XceI RCATGY 2 cut(s) 290, 736
XmiI GTMKAC 1 cut(s) 295
XmnI GAANNNNTTC 1 cut(s) 16
XspI CTAG 4 cut(s) 267, 417, 572, 1158
Zsp2I ATGCAT 1 cut(s) 1087
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.