arbuscular mycorrhizal association
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g23980 FvH4_5g23980 |
| malus_domestica | MD00G1002000.v1.1 MD06G1015600.v1.1 |
| prunus_persica | Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 |
| pyrus_communis | pycom06g01260 pycom16g25500 |
| rosa_chinensis | RchiOBHm_Chr7g0213421 |
| rosa_laevigata | RLG00000002805 |
| rosa_multiflora | Rmu_sc0003740.1_g000017 Rmu_sc0013012.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00245920 |
| rosa_rugosa | Rorug07G0142100 Rorug07G0142200 |
| rosa_samantha | Rh7AG274100 Rh7BG269400 Rh7CG293200 Rh7DG281600 |
| rosa_wichuraiana | Rw7G023770 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 521 |
| Acc65I | GGTACC | 1 cut(s) | 743 |
| AccB1I | GGYRCC | 1 cut(s) | 743 |
| AccI | GTMKAC | 1 cut(s) | 295 |
| AciI | CCGC | 2 cut(s) | 1313, 1375 |
| AclI | AACGTT | 2 cut(s) | 1030, 1222 |
| AclWI | GGATC | 7 cut(s) | 46, 471, 798, 876, 972, 1155, 1246 |
| AcsI | RAATTY | 3 cut(s) | 121, 664, 1192 |
| AcuI | CTGAAG | 2 cut(s) | 540, 953 |
| AfaI | GTAC | 3 cut(s) | 142, 235, 745 |
| AfeI | AGCGCT | 1 cut(s) | 1232 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 243, 1014 |
| AflIII | ACRYGT | 1 cut(s) | 286 |
| AgeI | ACCGGT | 1 cut(s) | 845 |
| AjnI | CCWGG | 2 cut(s) | 403, 440 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 800, 832, 1170, 1202 |
| AluBI | AGCT | 8 cut(s) | 168, 266, 270, 416, 763, 890, 1148, 1155 |
| AluI | AGCT | 8 cut(s) | 168, 266, 270, 416, 763, 890, 1148, 1155 |
| Alw26I | GTCTC | 1 cut(s) | 132 |
| AlwI | GGATC | 7 cut(s) | 46, 471, 798, 876, 972, 1155, 1246 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1547 |
| Aor51HI | AGCGCT | 1 cut(s) | 1232 |
| AoxI | GGCC | 1 cut(s) | 438 |
| ApeKI | GCWGC | 4 cut(s) | 192, 887, 1052, 1055 |
| ApoI | RAATTY | 3 cut(s) | 121, 664, 1192 |
| AseI | ATTAAT | 1 cut(s) | 339 |
| AsiGI | ACCGGT | 1 cut(s) | 845 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 16 |
| Asp718I | GGTACC | 1 cut(s) | 743 |
| AspLEI | GCGC | 2 cut(s) | 756, 1233 |
| AspS9I | GGNCC | 1 cut(s) | 1094 |
| AsuC2I | CCSGG | 1 cut(s) | 276 |
| AsuHPI | GGTGA | 2 cut(s) | 377, 739 |
| AsuNHI | GCTAGC | 2 cut(s) | 266, 416 |
| AvaII | GGWCC | 1 cut(s) | 1094 |
| BanI | GGYRCC | 1 cut(s) | 743 |
| BanII | GRGCYC | 1 cut(s) | 77 |
| BbvI | GCAGC | 4 cut(s) | 204, 899, 1039, 1042 |
| BccI | CCATC | 3 cut(s) | 667, 967, 1357 |
| BceAI | ACGGC | 1 cut(s) | 1526 |
| BciT130I | CCWGG | 2 cut(s) | 405, 442 |
| BciVI | GTATCC | 2 cut(s) | 339, 919 |
| BclI | TGATCA | 1 cut(s) | 853 |
| BcnI | CCSGG | 1 cut(s) | 276 |
| BcoDI | GTCTC | 1 cut(s) | 132 |
| BfaI | CTAG | 4 cut(s) | 267, 417, 572, 1158 |
| BfmI | CTRYAG | 1 cut(s) | 28 |
| BfoI | RGCGCY | 1 cut(s) | 1234 |
| BfuAI | ACCTGC | 1 cut(s) | 521 |
| BfuI | GTATCC | 2 cut(s) | 339, 919 |
| BglII | AGATCT | 2 cut(s) | 59, 1489 |
| BisI | GCNGC | 4 cut(s) | 193, 888, 1053, 1056 |
| BlpI | GCTNAGC | 1 cut(s) | 764 |
| BlsI | GCNGC | 4 cut(s) | 194, 889, 1054, 1057 |
| Bme1390I | CCNGG | 3 cut(s) | 276, 405, 442 |
| Bme18I | GGWCC | 1 cut(s) | 1094 |
| BmgT120I | GGNCC | 1 cut(s) | 1094 |
| BmiI | GGNNCC | 2 cut(s) | 745, 1096 |
| BmrFI | CCNGG | 3 cut(s) | 276, 405, 442 |
| BmrI | ACTGGG | 1 cut(s) | 71 |
| BmsI | GCATC | 2 cut(s) | 1072, 1261 |
| BmtI | GCTAGC | 2 cut(s) | 270, 420 |
| BmuI | ACTGGG | 1 cut(s) | 71 |
| BpmI | CTGGAG | 1 cut(s) | 1323 |
| Bpu10I | CCTNAGC | 2 cut(s) | 435, 1118 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 764 |
| BpuEI | CTTGAG | 1 cut(s) | 1008 |
| BpuMI | CCSGG | 1 cut(s) | 276 |
| BsaJI | CCNNGG | 2 cut(s) | 99, 747 |
| BsaWI | WCCGGW | 1 cut(s) | 845 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 243, 1014 |
| Bse118I | RCCGGY | 1 cut(s) | 845 |
| Bse1I | ACTGG | 5 cut(s) | 77, 966, 1061, 1340, 1552 |
| Bse3DI | GCAATG | 4 cut(s) | 90, 222, 322, 1558 |
| BseBI | CCWGG | 2 cut(s) | 405, 442 |
| BseDI | CCNNGG | 2 cut(s) | 99, 747 |
| BseGI | GGATG | 4 cut(s) | 252, 799, 1276, 1504 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 243, 1014 |
| BseMI | GCAATG | 4 cut(s) | 90, 222, 322, 1558 |
| BseMII | CTCAG | 4 cut(s) | 47, 375, 1109, 1437 |
| BseNI | ACTGG | 5 cut(s) | 77, 966, 1061, 1340, 1552 |
| BseRI | GAGGAG | 4 cut(s) | 59, 508, 1481, 1535 |
| BseXI | GCAGC | 4 cut(s) | 204, 899, 1039, 1042 |
| BseYI | CCCAGC | 1 cut(s) | 1097 |
| BsgI | GTGCAG | 1 cut(s) | 1041 |
| BshFI | GGCC | 1 cut(s) | 440 |
| BshNI | GGYRCC | 1 cut(s) | 743 |
| BshTI | ACCGGT | 1 cut(s) | 845 |
| BsiSI | CCGG | 2 cut(s) | 275, 846 |
| BslFI | GGGAC | 2 cut(s) | 1080, 1103 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 243, 1014 |
| BsmAI | GTCTC | 1 cut(s) | 132 |
| BsmFI | GGGAC | 2 cut(s) | 1080, 1103 |
| BsnI | GGCC | 1 cut(s) | 440 |
| Bsp1286I | GDGCHC | 1 cut(s) | 77 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 764 |
| Bsp19I | CCATGG | 1 cut(s) | 99 |
| BspACI | CCGC | 2 cut(s) | 1313, 1375 |
| BspANI | GGCC | 1 cut(s) | 440 |
| BspCNI | CTCAG | 4 cut(s) | 48, 374, 1110, 1438 |
| BspHI | TCATGA | 1 cut(s) | 1428 |
| BspLI | GGNNCC | 2 cut(s) | 745, 1096 |
| BspMI | ACCTGC | 1 cut(s) | 521 |
| BspOI | GCTAGC | 2 cut(s) | 270, 420 |
| BspPI | GGATC | 7 cut(s) | 46, 471, 798, 876, 972, 1155, 1246 |
| BspT107I | GGYRCC | 1 cut(s) | 743 |
| BsrDI | GCAATG | 4 cut(s) | 90, 222, 322, 1558 |
| BsrFI | RCCGGY | 1 cut(s) | 845 |
| BsrI | ACTGG | 5 cut(s) | 77, 966, 1061, 1340, 1552 |
| BssAI | RCCGGY | 1 cut(s) | 845 |
| BssECI | CCNNGG | 2 cut(s) | 99, 747 |
| BssNAI | GTATAC | 1 cut(s) | 296 |
| BssT1I | CCWWGG | 2 cut(s) | 99, 747 |
| Bst1107I | GTATAC | 1 cut(s) | 296 |
| Bst2UI | CCWGG | 2 cut(s) | 405, 442 |
| Bst4CI | ACNGT | 4 cut(s) | 323, 452, 929, 1094 |
| Bst6I | CTCTTC | 1 cut(s) | 164 |
| BstC8I | GCNNGC | 7 cut(s) | 170, 190, 268, 272, 418, 528, 734 |
| BstDEI | CTNAG | 7 cut(s) | 56, 361, 435, 764, 1118, 1446, 1455 |
| BstDSI | CCRYGG | 1 cut(s) | 99 |
| BstF5I | GGATG | 4 cut(s) | 252, 799, 1276, 1504 |
| BstH2I | RGCGCY | 1 cut(s) | 1234 |
| BstHHI | GCGC | 2 cut(s) | 756, 1233 |
| BstMAI | GTCTC | 1 cut(s) | 132 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 280, 760, 1456 |
| BstNI | CCWGG | 2 cut(s) | 405, 442 |
| BstNSI | RCATGY | 2 cut(s) | 290, 736 |
| BstSCI | CCNGG | 3 cut(s) | 274, 403, 440 |
| BstSFI | CTRYAG | 1 cut(s) | 28 |
| BstV1I | GCAGC | 4 cut(s) | 204, 899, 1039, 1042 |
| BstX2I | RGATCY | 5 cut(s) | 59, 803, 964, 1160, 1489 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1214 |
| BstYI | RGATCY | 5 cut(s) | 59, 803, 964, 1160, 1489 |
| BstZ17I | GTATAC | 1 cut(s) | 296 |
| BsuI | GTATCC | 2 cut(s) | 339, 919 |
| BsuRI | GGCC | 1 cut(s) | 440 |
| BtgI | CCRYGG | 1 cut(s) | 99 |
| BtsCI | GGATG | 4 cut(s) | 252, 799, 1276, 1504 |
| BtsIMutI | CAGTG | 2 cut(s) | 959, 1248 |
| BveI | ACCTGC | 1 cut(s) | 521 |
| Cac8I | GCNNGC | 7 cut(s) | 170, 190, 268, 272, 418, 528, 734 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1547 |
| CciI | TCATGA | 1 cut(s) | 1428 |
| CfoI | GCGC | 2 cut(s) | 756, 1233 |
| Cfr10I | RCCGGY | 1 cut(s) | 845 |
| Cfr13I | GGNCC | 1 cut(s) | 1094 |
| Csp6I | GTAC | 3 cut(s) | 141, 234, 744 |
| CspAI | ACCGGT | 1 cut(s) | 845 |
| CviAII | CATG | 9 cut(s) | 100, 287, 346, 392, 544, 733, 878, 1086, 1429 |
| CviQI | GTAC | 3 cut(s) | 141, 234, 744 |
| DdeI | CTNAG | 7 cut(s) | 56, 361, 435, 764, 1118, 1446, 1455 |
| Eam1104I | CTCTTC | 1 cut(s) | 164 |
| EarI | CTCTTC | 1 cut(s) | 164 |
| EciI | GGCGGA | 1 cut(s) | 1328 |
| Eco130I | CCWWGG | 2 cut(s) | 99, 747 |
| Eco147I | AGGCCT | 1 cut(s) | 440 |
| Eco24I | GRGCYC | 1 cut(s) | 77 |
| Eco47I | GGWCC | 1 cut(s) | 1094 |
| Eco47III | AGCGCT | 1 cut(s) | 1232 |
| Eco57I | CTGAAG | 2 cut(s) | 540, 953 |
| EcoRI | GAATTC | 1 cut(s) | 664 |
| EcoRII | CCWGG | 2 cut(s) | 403, 440 |
| EcoT14I | CCWWGG | 2 cut(s) | 99, 747 |
| EcoT22I | ATGCAT | 1 cut(s) | 1087 |
| EcoT38I | GRGCYC | 1 cut(s) | 77 |
| ErhI | CCWWGG | 2 cut(s) | 99, 747 |
| FaeI | CATG | 9 cut(s) | 103, 290, 349, 395, 547, 736, 881, 1089, 1432 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 731, 763, 1003, 1035 |
| FaqI | GGGAC | 2 cut(s) | 1080, 1103 |
| FatI | CATG | 9 cut(s) | 99, 286, 345, 391, 543, 732, 877, 1085, 1428 |
| FbaI | TGATCA | 1 cut(s) | 853 |
| FblI | GTMKAC | 1 cut(s) | 295 |
| Fnu4HI | GCNGC | 4 cut(s) | 193, 888, 1053, 1056 |
| FokI | GGATG | 4 cut(s) | 259, 806, 1283, 1511 |
| FriOI | GRGCYC | 1 cut(s) | 77 |
| Fsp4HI | GCNGC | 4 cut(s) | 193, 888, 1053, 1056 |
| FspBI | CTAG | 4 cut(s) | 267, 417, 572, 1158 |
| GlaI | GCGC | 2 cut(s) | 755, 1232 |
| GluI | GCNGC | 4 cut(s) | 193, 888, 1053, 1056 |
| GsaI | CCCAGC | 1 cut(s) | 1101 |
| GsuI | CTGGAG | 1 cut(s) | 1323 |
| HaeII | RGCGCY | 1 cut(s) | 1234 |
| HaeIII | GGCC | 1 cut(s) | 440 |
| HapII | CCGG | 2 cut(s) | 275, 846 |
| HhaI | GCGC | 2 cut(s) | 756, 1233 |
| Hin1II | CATG | 9 cut(s) | 103, 290, 349, 395, 547, 736, 881, 1089, 1432 |
| Hin6I | GCGC | 2 cut(s) | 754, 1231 |
| HinP1I | GCGC | 2 cut(s) | 754, 1231 |
| HincII | GTYRAC | 2 cut(s) | 841, 925 |
| HindII | GTYRAC | 2 cut(s) | 841, 925 |
| HindIII | AAGCTT | 1 cut(s) | 761 |
| HinfI | GANTC | 3 cut(s) | 1043, 1442, 1533 |
| HpaI | GTTAAC | 1 cut(s) | 925 |
| HpaII | CCGG | 2 cut(s) | 275, 846 |
| HphI | GGTGA | 2 cut(s) | 377, 739 |
| Hpy166II | GTNNAC | 5 cut(s) | 296, 678, 841, 925, 959 |
| Hpy188I | TCNGA | 9 cut(s) | 22, 484, 774, 972, 1175, 1261, 1354, 1447, 1543 |
| Hpy8I | GTNNAC | 5 cut(s) | 296, 678, 841, 925, 959 |
| HpyAV | CCTTC | 8 cut(s) | 6, 624, 658, 947, 971, 1320, 1432, 1435 |
| HpyCH4III | ACNGT | 4 cut(s) | 323, 452, 929, 1094 |
| HpyCH4IV | ACGT | 3 cut(s) | 814, 1030, 1222 |
| HpyCH4V | TGCA | 9 cut(s) | 83, 227, 511, 547, 1058, 1085, 1274, 1360, 1474 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 280, 760, 1456 |
| HpyF3I | CTNAG | 7 cut(s) | 56, 361, 435, 764, 1118, 1446, 1455 |
| HpySE526I | ACGT | 3 cut(s) | 814, 1030, 1222 |
| Hsp92II | CATG | 9 cut(s) | 103, 290, 349, 395, 547, 736, 881, 1089, 1432 |
| HspAI | GCGC | 2 cut(s) | 754, 1231 |
| KpnI | GGTACC | 1 cut(s) | 747 |
| Ksp22I | TGATCA | 1 cut(s) | 853 |
| KspAI | GTTAAC | 1 cut(s) | 925 |
| LmnI | GCTCC | 1 cut(s) | 751 |
| Lsp1109I | GCAGC | 4 cut(s) | 204, 899, 1039, 1042 |
| LweI | GCATC | 2 cut(s) | 1072, 1261 |
| MaeI | CTAG | 4 cut(s) | 267, 417, 572, 1158 |
| MaeII | ACGT | 3 cut(s) | 814, 1030, 1222 |
| MaeIII | GTNAC | 3 cut(s) | 365, 1243, 1299 |
| MboII | GAAGA | 4 cut(s) | 21, 151, 959, 1499 |
| MfeI | CAATTG | 2 cut(s) | 202, 638 |
| MflI | RGATCY | 5 cut(s) | 59, 803, 964, 1160, 1489 |
| MhlI | GDGCHC | 1 cut(s) | 77 |
| MlyI | GAGTC | 1 cut(s) | 1542 |
| Mph1103I | ATGCAT | 1 cut(s) | 1087 |
| MroXI | GAANNNNTTC | 1 cut(s) | 16 |
| MseI | TTAA | 3 cut(s) | 117, 339, 924 |
| MspA1I | CMGCKG | 1 cut(s) | 890 |
| MspI | CCGG | 2 cut(s) | 275, 846 |
| MspR9I | CCNGG | 3 cut(s) | 276, 405, 442 |
| MunI | CAATTG | 2 cut(s) | 202, 638 |
| MvaI | CCWGG | 2 cut(s) | 405, 442 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 280, 760, 1456 |
| NciI | CCSGG | 1 cut(s) | 276 |
| NcoI | CCATGG | 1 cut(s) | 99 |
| NheI | GCTAGC | 2 cut(s) | 266, 416 |
| NlaIII | CATG | 9 cut(s) | 103, 290, 349, 395, 547, 736, 881, 1089, 1432 |
| NlaIV | GGNNCC | 2 cut(s) | 745, 1096 |
| NmuCI | GTSAC | 3 cut(s) | 365, 1243, 1299 |
| NsiI | ATGCAT | 1 cut(s) | 1087 |
| NspI | RCATGY | 2 cut(s) | 290, 736 |
| PaeI | GCATGC | 1 cut(s) | 736 |
| PagI | TCATGA | 1 cut(s) | 1428 |
| PceI | AGGCCT | 1 cut(s) | 440 |
| PciI | ACATGT | 1 cut(s) | 286 |
| PdmI | GAANNNNTTC | 1 cut(s) | 16 |
| PfeI | GAWTC | 2 cut(s) | 1043, 1442 |
| PinAI | ACCGGT | 1 cut(s) | 845 |
| PkrI | GCNGC | 4 cut(s) | 194, 889, 1054, 1057 |
| PleI | GAGTC | 1 cut(s) | 1541 |
| PpsI | GAGTC | 1 cut(s) | 1541 |
| PscI | ACATGT | 1 cut(s) | 286 |
| PshBI | ATTAAT | 1 cut(s) | 339 |
| Psp1406I | AACGTT | 2 cut(s) | 1030, 1222 |
| Psp6I | CCWGG | 2 cut(s) | 403, 440 |
| PspFI | CCCAGC | 1 cut(s) | 1097 |
| PspGI | CCWGG | 2 cut(s) | 403, 440 |
| PspN4I | GGNNCC | 2 cut(s) | 745, 1096 |
| PspPI | GGNCC | 1 cut(s) | 1094 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 393, 425 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1547 |
| PsuI | RGATCY | 5 cut(s) | 59, 803, 964, 1160, 1489 |
| PvuII | CAGCTG | 1 cut(s) | 890 |
| RsaI | GTAC | 3 cut(s) | 142, 235, 745 |
| RsaNI | GTAC | 3 cut(s) | 141, 234, 744 |
| SaqAI | TTAA | 3 cut(s) | 117, 339, 924 |
| SatI | GCNGC | 4 cut(s) | 193, 888, 1053, 1056 |
| Sau96I | GGNCC | 1 cut(s) | 1094 |
| SchI | GAGTC | 1 cut(s) | 1542 |
| ScrFI | CCNGG | 3 cut(s) | 276, 405, 442 |
| SduI | GDGCHC | 1 cut(s) | 77 |
| SfaNI | GCATC | 2 cut(s) | 1072, 1261 |
| SfcI | CTRYAG | 1 cut(s) | 28 |
| SinI | GGWCC | 1 cut(s) | 1094 |
| SmlI | CTYRAG | 1 cut(s) | 1023 |
| SmoI | CTYRAG | 1 cut(s) | 1023 |
| SphI | GCATGC | 1 cut(s) | 736 |
| SseBI | AGGCCT | 1 cut(s) | 440 |
| SsiI | CCGC | 2 cut(s) | 1313, 1375 |
| SspMI | CTAG | 4 cut(s) | 267, 417, 572, 1158 |
| StuI | AGGCCT | 1 cut(s) | 440 |
| StyD4I | CCNGG | 3 cut(s) | 274, 403, 440 |
| StyI | CCWWGG | 2 cut(s) | 99, 747 |
| TaaI | ACNGT | 4 cut(s) | 323, 452, 929, 1094 |
| TaiI | ACGT | 3 cut(s) | 817, 1033, 1225 |
| TaqI | TCGA | 1 cut(s) | 662 |
| TfiI | GAWTC | 2 cut(s) | 1043, 1442 |
| Tru1I | TTAA | 3 cut(s) | 117, 339, 924 |
| Tru9I | TTAA | 3 cut(s) | 117, 339, 924 |
| TscAI | CASTG | 2 cut(s) | 966, 1248 |
| TseFI | GTSAC | 3 cut(s) | 365, 1243, 1299 |
| TseI | GCWGC | 4 cut(s) | 192, 887, 1052, 1055 |
| Tsp45I | GTSAC | 3 cut(s) | 365, 1243, 1299 |
| TspGWI | ACGGA | 5 cut(s) | 259, 505, 1195, 1251, 1318 |
| TspRI | CASTG | 2 cut(s) | 966, 1248 |
| VpaK11BI | GGWCC | 1 cut(s) | 1094 |
| VspI | ATTAAT | 1 cut(s) | 339 |
| XapI | RAATTY | 3 cut(s) | 121, 664, 1192 |
| XbaI | TCTAGA | 1 cut(s) | 1157 |
| XceI | RCATGY | 2 cut(s) | 290, 736 |
| XmiI | GTMKAC | 1 cut(s) | 295 |
| XmnI | GAANNNNTTC | 1 cut(s) | 16 |
| XspI | CTAG | 4 cut(s) | 267, 417, 572, 1158 |
| Zsp2I | ATGCAT | 1 cut(s) | 1087 |