Rorug07G0142200

arbuscular mycorrhizal association

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0006933
Physical Location & Seq
Forward (+)
11224715 .. 11225317
603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0142200.1

Sequence Viewer

Length: 327 bp
ATGGCCTCATTGCAGAGCTACAAACCTGTTAGAGACAAAGAGAGTCGGGGGGTGGGGGGTAGGGCGCGCCTGGCCAGTTTTACAGTAACCGTCAGCCAGACTCGTCACTATGGACAGAACTCAGACGACACCATAGCCGAAACCGAGACTCAATCCTATAGCCAAACCCAGACCTACTACCTGGATCAGAAGTTGGCCAAGGCCAAAAGCCAGGCTCACTGCGTGGCTGAAAAGACTGGAAATATATTGAAAGAAAAGGCGGCAGGGCACAAGAGCAAGGATAATCCGTGTAAGATAAAATGCAAGGATGGCGATAAGAGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0036377 GO:0044403 GO:0044419 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.93

Weight (kDa)

9.49

Isoelectric Point (pI)

35.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 67
AciI CCGC 1 cut(s) 260
AclWI GGATC 1 cut(s) 192
AcoI YGGCCR 2 cut(s) 72, 195
AdeI CACNNNGTG 1 cut(s) 223
AgsI TTSAA 1 cut(s) 250
AjnI CCWGG 3 cut(s) 69, 180, 210
AluBI AGCT 1 cut(s) 18
AluI AGCT 1 cut(s) 18
Alw26I GTCTC 2 cut(s) 27, 140
AlwI GGATC 1 cut(s) 192
AoxI GGCC 4 cut(s) 3, 72, 195, 201
AscI GGCGCGCC 1 cut(s) 65
AspLEI GCGC 2 cut(s) 67, 69
BaeGI GKGCMC 1 cut(s) 270
BalI TGGCCA 2 cut(s) 74, 197
BccI CCATC 1 cut(s) 302
BciT130I CCWGG 3 cut(s) 71, 182, 212
BcoDI GTCTC 2 cut(s) 27, 140
BfmI CTRYAG 1 cut(s) 157
BisI GCNGC 1 cut(s) 261
BlsI GCNGC 1 cut(s) 262
Bme1390I CCNGG 3 cut(s) 71, 182, 212
BmrFI CCNGG 3 cut(s) 71, 182, 212
BsaJI CCNNGG 1 cut(s) 198
Bse1I ACTGG 2 cut(s) 75, 241
Bse3DI GCAATG 1 cut(s) 8
BseBI CCWGG 3 cut(s) 71, 182, 212
BseDI CCNNGG 1 cut(s) 198
BseGI GGATG 1 cut(s) 313
BseMI GCAATG 1 cut(s) 8
BseMII CTCAG 1 cut(s) 135
BseNI ACTGG 2 cut(s) 75, 241
BsePI GCGCGC 1 cut(s) 65
BseSI GKGCMC 1 cut(s) 270
Bsh1236I CGCG 1 cut(s) 67
BshFI GGCC 4 cut(s) 5, 74, 197, 203
BsmAI GTCTC 2 cut(s) 27, 140
BsnI GGCC 4 cut(s) 5, 74, 197, 203
Bsp1286I GDGCHC 1 cut(s) 270
Bsp143I GATC 1 cut(s) 184
BspACI CCGC 1 cut(s) 260
BspANI GGCC 4 cut(s) 5, 74, 197, 203
BspCNI CTCAG 1 cut(s) 134
BspFNI CGCG 1 cut(s) 67
BspPI GGATC 1 cut(s) 192
BsrDI GCAATG 1 cut(s) 8
BsrI ACTGG 2 cut(s) 75, 241
BssECI CCNNGG 1 cut(s) 198
BssHII GCGCGC 1 cut(s) 65
BssMI GATC 1 cut(s) 184
BssT1I CCWWGG 1 cut(s) 198
Bst2UI CCWGG 3 cut(s) 71, 182, 212
Bst4CI ACNGT 2 cut(s) 85, 91
BstC8I GCNNGC 1 cut(s) 67
BstDEI CTNAG 1 cut(s) 121
BstF5I GGATG 1 cut(s) 313
BstFNI CGCG 1 cut(s) 67
BstHHI GCGC 2 cut(s) 67, 69
BstKTI GATC 1 cut(s) 187
BstMAI GTCTC 2 cut(s) 27, 140
BstMBI GATC 1 cut(s) 184
BstMWI GCNNNNNNNGC 3 cut(s) 71, 309, 318
BstNI CCWGG 3 cut(s) 71, 182, 212
BstSCI CCNGG 3 cut(s) 69, 180, 210
BstSFI CTRYAG 1 cut(s) 157
BstSLI GKGCMC 1 cut(s) 270
BstUI CGCG 1 cut(s) 67
BsuRI GGCC 4 cut(s) 5, 74, 197, 203
BtsCI GGATG 1 cut(s) 313
BtsI GCAGTG 1 cut(s) 217
BtsIMutI CAGTG 1 cut(s) 217
Cac8I GCNNGC 1 cut(s) 67
CfoI GCGC 2 cut(s) 67, 69
DdeI CTNAG 1 cut(s) 121
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
DraIII CACNNNGTG 1 cut(s) 223
EaeI YGGCCR 2 cut(s) 72, 195
Eco130I CCWWGG 1 cut(s) 198
EcoRII CCWGG 3 cut(s) 69, 180, 210
EcoT14I CCWWGG 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 198
FaiI YATR 4 cut(s) 111, 134, 159, 245
Fnu4HI GCNGC 1 cut(s) 261
FokI GGATG 1 cut(s) 320
Fsp4HI GCNGC 1 cut(s) 261
GlaI GCGC 2 cut(s) 66, 68
GluI GCNGC 1 cut(s) 261
HaeIII GGCC 4 cut(s) 5, 74, 197, 203
HhaI GCGC 2 cut(s) 67, 69
Hin6I GCGC 2 cut(s) 65, 67
HinP1I GCGC 2 cut(s) 65, 67
HinfI GANTC 3 cut(s) 43, 100, 148
Hpy188I TCNGA 2 cut(s) 124, 189
HpyCH4III ACNGT 2 cut(s) 85, 91
HpyCH4V TGCA 2 cut(s) 13, 303
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 309, 318
HpyF3I CTNAG 1 cut(s) 121
HspAI GCGC 2 cut(s) 65, 67
Kzo9I GATC 1 cut(s) 184
MaeIII GTNAC 2 cut(s) 85, 104
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MhlI GDGCHC 1 cut(s) 270
MlsI TGGCCA 2 cut(s) 74, 197
MluNI TGGCCA 2 cut(s) 74, 197
MlyI GAGTC 3 cut(s) 52, 94, 142
MnlI CCTC 1 cut(s) 16
Mox20I TGGCCA 2 cut(s) 74, 197
MscI TGGCCA 2 cut(s) 74, 197
Msp20I TGGCCA 2 cut(s) 74, 197
MspR9I CCNGG 3 cut(s) 71, 182, 212
MvaI CCWGG 3 cut(s) 71, 182, 212
MvnI CGCG 1 cut(s) 67
MwoI GCNNNNNNNGC 3 cut(s) 71, 309, 318
NdeII GATC 1 cut(s) 184
NmuCI GTSAC 1 cut(s) 104
PalAI GGCGCGCC 1 cut(s) 65
PauI GCGCGC 1 cut(s) 65
PkrI GCNGC 1 cut(s) 262
PleI GAGTC 3 cut(s) 51, 94, 142
PpsI GAGTC 3 cut(s) 51, 94, 142
Psp6I CCWGG 3 cut(s) 69, 180, 210
PspGI CCWGG 3 cut(s) 69, 180, 210
PteI GCGCGC 1 cut(s) 65
SatI GCNGC 1 cut(s) 261
Sau3AI GATC 1 cut(s) 184
SchI GAGTC 3 cut(s) 52, 94, 142
ScrFI CCNGG 3 cut(s) 71, 182, 212
SduI GDGCHC 1 cut(s) 270
SetI ASST 4 cut(s) 20, 28, 176, 183
SfcI CTRYAG 1 cut(s) 157
SgsI GGCGCGCC 1 cut(s) 65
SsiI CCGC 1 cut(s) 260
StyD4I CCNGG 3 cut(s) 69, 180, 210
StyI CCWWGG 1 cut(s) 198
TaaI ACNGT 2 cut(s) 85, 91
TauI GCSGC 1 cut(s) 263
TscAI CASTG 1 cut(s) 224
TseFI GTSAC 1 cut(s) 104
Tsp45I GTSAC 1 cut(s) 104
TspGWI ACGGA 1 cut(s) 276
TspRI CASTG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.