Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0006933

Physical Location & Seq

Genomic Coordinates Forward (+)

28651725 .. 28658059

Gene Structure 6335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG274100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGCCTGATGAGAACTCAGCTGACCTCAATCAACATTCAAACAGACTTGGTGTTGAAAGAGGAATGCAAGCTAGTGACTTATATTTGGCTAAGGCCTGGTTTCACAGTTCCCAACCCATGACAAGAAGCCGGTCCTCTGAATTGCGGAAGAGATATGTTGCCTTGCAAAATTCTCAACCAGCAATAGGTCTGGATGGCCTTCAAAATGCTTCAGGGAATTATAACAATGTAGTAAAAGAAGAATTTGCATTTTCAAATGGCTTTAATGTTCCCTCAATATGTGAGGTTTCTAACCAGTTGGGGACCTTCATTTCTCCATCCAATTCATCCTCATCCACTTTCGACGCTCCTCAAATGGGTGACATGGATAAAGTATCATCTGTTGTGAGCATGCTAAAGGGTACATTAGAGCGCAAAAAGCTTAGCAACCAGATTGAAAAAGGTGCAGAGGATGATAGCTCCACTAGGCTTTTCCCTGGTCAAGAAGTTATAGTCAACACTGGTTTTGATCAAGGGCAAGGTAATCAGCTTCAAGATATGGTGAGAACTTTTCAGGAAGTATCCACTATCGAAGTTAAGGATCATGGCGGTATGCAAAAAGCTGAAGGATCCCTGGATCTTGAGATGGAAGGTTTTGTAAATCTCACAAACCCAAACCCGTTGAGCAGGAATTCTCAAGAACCTTCACAAAGTGAATCATCTGCTGCAGCACCAGTAGTTTCATCTGGGTTTGATGCATGTGATGATCCCAGCAACTCAAGTCAAACTCTGAGCATATGTGAAAGTTCACTGAAACGAGCTGGAAATAGGAGTTCAGAAAATGGCTCTAGATCGAAAGATATTAGAGAACGTATTATTGGTAATTTGAAAGATGATCAAAAGAGGGGAGAACGTTTAGAGCGATATGGATCTGTGACATCAGCCACTTCAGGAGATAAGGAGGATGCCACAAAAAAGCGGAGGGTGGAGAGATCACGCAAAATGGCAGAGGCAAAGGAAAGGAACTCAACTCCAGTAATTCCATCAGATATACAATCTGTTTTGAAGCGGTGTGAAAATCTTGAAAAGGAAGTCCGGTCCCTCAAACTTAACTTGTCCTTCATGAATAGGAAGGATTCTGAGCAGACAAAGCAGATAGAGGAGCTTCAGCAGCAAAACGAAGAATTAACAGATGAAAAGGAGCGCCTTTTAGAAGAGATTGAAAGGATCCTTGCAGAAAATGGCAAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0036377 GO:0044403 GO:0044419 GO:0051704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

410

Amino Acids

45.52

Weight (kDa)

5.21

Isoelectric Point (pI)

59.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006933)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23980 FvH4_5g23980
malus_domestica	MD00G1002000.v1.1 MD06G1015600.v1.1
prunus_persica	Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1
pyrus_communis	pycom06g01260 pycom16g25500
rosa_chinensis	RchiOBHm_Chr7g0213421
rosa_laevigata	RLG00000002805
rosa_multiflora	Rmu_sc0003740.1_g000017 Rmu_sc0013012.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245920
rosa_rugosa	Rorug07G0142100 Rorug07G0142200
rosa_samantha	Rh7AG274100 Rh7BG269400 Rh7CG293200 Rh7DG281600
rosa_wichuraiana	Rw7G023770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	222
AciI	CCGC	4 cut(s)	145, 588, 958, 1048
AclI	AACGTT	1 cut(s)	892
AclWI	GGATC	8 cut(s)	588, 603, 616, 624, 740, 916, 1201, 1214
AcsI	RAATTY	3 cut(s)	169, 242, 670
AcuI	CTGAAG	4 cut(s)	195, 624, 912, 1130
AdeI	CACNNNGTG	1 cut(s)	692
AfaI	GTAC	1 cut(s)	403
AfiI	CCNNNNNNNGG	2 cut(s)	185, 356
AjnI	CCWGG	3 cut(s)	95, 475, 612
AjuI	GAANNNNNNNTTGG	2 cut(s)	840, 872
AluBI	AGCT	8 cut(s)	20, 71, 421, 459, 529, 602, 800, 1144
AluI	AGCT	8 cut(s)	20, 71, 421, 459, 529, 602, 800, 1144
AlwI	GGATC	8 cut(s)	588, 603, 616, 624, 740, 916, 1201, 1214
AoxI	GGCC	2 cut(s)	93, 196
ApeKI	GCWGC	3 cut(s)	704, 707, 1150
ApoI	RAATTY	3 cut(s)	169, 242, 670
AspLEI	GCGC	2 cut(s)	414, 1185
AspS9I	GGNCC	3 cut(s)	132, 303, 1077
AsuHPI	GGTGA	2 cut(s)	371, 553
AvaII	GGWCC	3 cut(s)	132, 303, 1077
BamHI	GGATCC	2 cut(s)	608, 1206
BbvI	GCAGC	3 cut(s)	691, 719, 1162
BccI	CCATC	4 cut(s)	188, 325, 619, 1030
BciT130I	CCWGG	3 cut(s)	97, 477, 614
BciVI	GTATCC	1 cut(s)	571
BclI	TGATCA	2 cut(s)	508, 874
BfaI	CTAG	3 cut(s)	72, 465, 828
BfmI	CTRYAG	1 cut(s)	705
BfoI	RGCGCY	1 cut(s)	1186
BfuI	GTATCC	1 cut(s)	571
BisI	GCNGC	3 cut(s)	705, 708, 1151
BlpI	GCTNAGC	1 cut(s)	422
BlsI	GCNGC	3 cut(s)	706, 709, 1152
Bme1390I	CCNGG	3 cut(s)	97, 477, 614
Bme18I	GGWCC	3 cut(s)	132, 303, 1077
BmgT120I	GGNCC	3 cut(s)	132, 303, 1077
BmiI	GGNNCC	4 cut(s)	304, 610, 1079, 1208
BmrFI	CCNGG	3 cut(s)	97, 477, 614
BmsI	GCATC	2 cut(s)	724, 934
BpmI	CTGGAG	1 cut(s)	996
Bpu10I	CCTNAGC	1 cut(s)	90
Bpu1102I	GCTNAGC	1 cut(s)	422
BpuEI	CTTGAG	3 cut(s)	641, 660, 742
BsaBI	GATNNNNATC	1 cut(s)	907
BsaJI	CCNNGG	2 cut(s)	475, 612
BsaWI	WCCGGW	1 cut(s)	1074
Bsc4I	CCNNNNNNNGG	2 cut(s)	185, 356
Bse118I	RCCGGY	1 cut(s)	129
Bse1I	ACTGG	4 cut(s)	295, 505, 713, 1013
Bse8I	GATNNNNATC	1 cut(s)	907
BseBI	CCWGG	3 cut(s)	97, 477, 614
BseDI	CCNNGG	2 cut(s)	475, 612
BseGI	GGATG	6 cut(s)	199, 317, 326, 332, 457, 949
BseJI	GATNNNNATC	1 cut(s)	907
BseLI	CCNNNNNNNGG	2 cut(s)	185, 356
BseMII	CTCAG	3 cut(s)	30, 761, 1110
BseNI	ACTGG	4 cut(s)	295, 505, 713, 1013
BseRI	GAGGAG	2 cut(s)	339, 1154
BseXI	GCAGC	3 cut(s)	691, 719, 1162
BseYI	CCCAGC	1 cut(s)	749
BsgI	GTGCAG	1 cut(s)	465
BshFI	GGCC	2 cut(s)	95, 198
BsiSI	CCGG	2 cut(s)	130, 1075
BslFI	GGGAC	2 cut(s)	316, 1063
BslI	CCNNNNNNNGG	2 cut(s)	185, 356
BsmFI	GGGAC	2 cut(s)	316, 1063
BsmI	GAATGC	1 cut(s)	69
BsnI	GGCC	2 cut(s)	95, 198
Bsp1720I	GCTNAGC	1 cut(s)	422
BspACI	CCGC	4 cut(s)	145, 588, 958, 1048
BspANI	GGCC	2 cut(s)	95, 198
BspCNI	CTCAG	3 cut(s)	29, 762, 1111
BspHI	TCATGA	1 cut(s)	1101
BspLI	GGNNCC	4 cut(s)	304, 610, 1079, 1208
BspMAI	CTGCAG	1 cut(s)	709
BspPI	GGATC	8 cut(s)	588, 603, 616, 624, 740, 916, 1201, 1214
BsrFI	RCCGGY	1 cut(s)	129
BsrI	ACTGG	4 cut(s)	295, 505, 713, 1013
BssAI	RCCGGY	1 cut(s)	129
BssECI	CCNNGG	2 cut(s)	475, 612
Bst2UI	CCWGG	3 cut(s)	97, 477, 614
Bst4CI	ACNGT	1 cut(s)	107
Bst6I	CTCTTC	2 cut(s)	143, 1188
BstC8I	GCNNGC	2 cut(s)	69, 392
BstDEI	CTNAG	5 cut(s)	16, 90, 422, 770, 1119
BstF5I	GGATG	6 cut(s)	199, 317, 326, 332, 457, 949
BstH2I	RGCGCY	1 cut(s)	1186
BstHHI	GCGC	2 cut(s)	414, 1185
BstMWI	GCNNNNNNNGC	3 cut(s)	418, 1129, 1150
BstNI	CCWGG	3 cut(s)	97, 477, 614
BstNSI	RCATGY	2 cut(s)	394, 741
BstSCI	CCNGG	3 cut(s)	95, 475, 612
BstSFI	CTRYAG	1 cut(s)	705
BstV1I	GCAGC	3 cut(s)	691, 719, 1162
BstX2I	RGATCY	4 cut(s)	608, 616, 908, 1206
BstYI	RGATCY	4 cut(s)	608, 616, 908, 1206
BsuI	GTATCC	1 cut(s)	571
BsuRI	GGCC	2 cut(s)	95, 198
BtsCI	GGATG	6 cut(s)	199, 317, 326, 332, 457, 949
BtsIMutI	CAGTG	2 cut(s)	498, 788
Cac8I	GCNNGC	2 cut(s)	69, 392
CciI	TCATGA	1 cut(s)	1101
CfoI	GCGC	2 cut(s)	414, 1185
Cfr10I	RCCGGY	1 cut(s)	129
Cfr13I	GGNCC	3 cut(s)	132, 303, 1077
CseI	GACGC	1 cut(s)	353
Csp6I	GTAC	1 cut(s)	402
CviAII	CATG	6 cut(s)	118, 364, 391, 584, 738, 1102
CviQI	GTAC	1 cut(s)	402
DdeI	CTNAG	5 cut(s)	16, 90, 422, 770, 1119
DraIII	CACNNNGTG	1 cut(s)	692
Eam1104I	CTCTTC	2 cut(s)	143, 1188
EarI	CTCTTC	2 cut(s)	143, 1188
Eco147I	AGGCCT	1 cut(s)	95
Eco47I	GGWCC	3 cut(s)	132, 303, 1077
Eco57I	CTGAAG	4 cut(s)	195, 624, 912, 1130
EcoO109I	RGGNCCY	1 cut(s)	303
EcoRI	GAATTC	1 cut(s)	670
EcoRII	CCWGG	3 cut(s)	95, 475, 612
EcoT22I	ATGCAT	1 cut(s)	739
FaeI	CATG	6 cut(s)	121, 367, 394, 587, 741, 1105
FaqI	GGGAC	2 cut(s)	316, 1063
FatI	CATG	6 cut(s)	117, 363, 390, 583, 737, 1101
FauNDI	CATATG	1 cut(s)	776
FbaI	TGATCA	2 cut(s)	508, 874
Fnu4HI	GCNGC	3 cut(s)	705, 708, 1151
FokI	GGATG	6 cut(s)	206, 304, 313, 319, 464, 956
Fsp4HI	GCNGC	3 cut(s)	705, 708, 1151
FspBI	CTAG	3 cut(s)	72, 465, 828
GlaI	GCGC	2 cut(s)	413, 1184
GluI	GCNGC	3 cut(s)	705, 708, 1151
GsaI	CCCAGC	1 cut(s)	753
GsuI	CTGGAG	1 cut(s)	996
HaeII	RGCGCY	1 cut(s)	1186
HaeIII	GGCC	2 cut(s)	95, 198
HapII	CCGG	2 cut(s)	130, 1075
HgaI	GACGC	1 cut(s)	353
HhaI	GCGC	2 cut(s)	414, 1185
Hin1II	CATG	6 cut(s)	121, 367, 394, 587, 741, 1105
Hin6I	GCGC	2 cut(s)	412, 1183
HinP1I	GCGC	2 cut(s)	412, 1183
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HindIII	AAGCTT	1 cut(s)	419
HinfI	GANTC	2 cut(s)	695, 1115
HpaII	CCGG	2 cut(s)	130, 1075
HphI	GGTGA	2 cut(s)	371, 553
Hpy166II	GTNNAC	2 cut(s)	496, 788
Hpy188I	TCNGA	5 cut(s)	139, 771, 817, 1027, 1120
Hpy8I	GTNNAC	2 cut(s)	496, 788
Hpy99I	CGWCG	1 cut(s)	347
HpyAV	CCTTC	7 cut(s)	209, 316, 599, 623, 693, 1105, 1108
HpyCH4III	ACNGT	1 cut(s)	107
HpyCH4IV	ACGT	2 cut(s)	850, 892
HpyCH4V	TGCA	8 cut(s)	67, 166, 248, 446, 595, 707, 737, 1214
HpyF10VI	GCNNNNNNNGC	3 cut(s)	418, 1129, 1150
HpyF3I	CTNAG	5 cut(s)	16, 90, 422, 770, 1119
HpySE526I	ACGT	2 cut(s)	850, 892
Hsp92II	CATG	6 cut(s)	121, 367, 394, 587, 741, 1105
HspAI	GCGC	2 cut(s)	412, 1183
Ksp22I	TGATCA	2 cut(s)	508, 874
LmnI	GCTCC	4 cut(s)	352, 464, 1141, 1180
Lsp1109I	GCAGC	3 cut(s)	691, 719, 1162
LweI	GCATC	2 cut(s)	724, 934
MaeI	CTAG	3 cut(s)	72, 465, 828
MaeII	ACGT	2 cut(s)	850, 892
MaeIII	GTNAC	3 cut(s)	74, 359, 913
MboII	GAAGA	4 cut(s)	160, 251, 1172, 1205
MflI	RGATCY	4 cut(s)	608, 616, 908, 1206
MluCI	AATT	9 cut(s)	140, 169, 217, 242, 322, 670, 862, 1017, 1163
Mph1103I	ATGCAT	1 cut(s)	739
MseI	TTAA	4 cut(s)	264, 576, 1089, 1166
MspA1I	CMGCKG	1 cut(s)	20
MspI	CCGG	2 cut(s)	130, 1075
MspR9I	CCNGG	3 cut(s)	97, 477, 614
Mva1269I	GAATGC	1 cut(s)	69
MvaI	CCWGG	3 cut(s)	97, 477, 614
MwoI	GCNNNNNNNGC	3 cut(s)	418, 1129, 1150
NdeI	CATATG	1 cut(s)	776
NlaIII	CATG	6 cut(s)	121, 367, 394, 587, 741, 1105
NlaIV	GGNNCC	4 cut(s)	304, 610, 1079, 1208
NmuCI	GTSAC	3 cut(s)	74, 359, 913
NsiI	ATGCAT	1 cut(s)	739
NspI	RCATGY	2 cut(s)	394, 741
PaeI	GCATGC	1 cut(s)	394
PagI	TCATGA	1 cut(s)	1101
PceI	AGGCCT	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	1 cut(s)	898
PctI	GAATGC	1 cut(s)	69
PfeI	GAWTC	2 cut(s)	695, 1115
PkrI	GCNGC	3 cut(s)	706, 709, 1152
PpuMI	RGGWCCY	1 cut(s)	303
PsiI	TTATAA	1 cut(s)	222
Psp1406I	AACGTT	1 cut(s)	892
Psp5II	RGGWCCY	1 cut(s)	303
Psp6I	CCWGG	3 cut(s)	95, 475, 612
PspFI	CCCAGC	1 cut(s)	749
PspGI	CCWGG	3 cut(s)	95, 475, 612
PspN4I	GGNNCC	4 cut(s)	304, 610, 1079, 1208
PspPI	GGNCC	3 cut(s)	132, 303, 1077
PspPPI	RGGWCCY	1 cut(s)	303
PstI	CTGCAG	1 cut(s)	709
PsuI	RGATCY	4 cut(s)	608, 616, 908, 1206
PvuII	CAGCTG	1 cut(s)	20
RsaI	GTAC	1 cut(s)	403
RsaNI	GTAC	1 cut(s)	402
SaqAI	TTAA	4 cut(s)	264, 576, 1089, 1166
SatI	GCNGC	3 cut(s)	705, 708, 1151
Sau96I	GGNCC	3 cut(s)	132, 303, 1077
ScrFI	CCNGG	3 cut(s)	97, 477, 614
SfaNI	GCATC	2 cut(s)	724, 934
SfcI	CTRYAG	1 cut(s)	705
SinI	GGWCC	3 cut(s)	132, 303, 1077
SmlI	CTYRAG	3 cut(s)	620, 675, 757
SmoI	CTYRAG	3 cut(s)	620, 675, 757
SphI	GCATGC	1 cut(s)	394
Sse9I	AATT	9 cut(s)	140, 169, 217, 242, 322, 670, 862, 1017, 1163
SseBI	AGGCCT	1 cut(s)	95
SsiI	CCGC	4 cut(s)	145, 588, 958, 1048
SspMI	CTAG	3 cut(s)	72, 465, 828
StuI	AGGCCT	1 cut(s)	95
StyD4I	CCNGG	3 cut(s)	95, 475, 612
TaaI	ACNGT	1 cut(s)	107
TaiI	ACGT	2 cut(s)	853, 895
TaqI	TCGA	3 cut(s)	342, 570, 833
TasI	AATT	9 cut(s)	140, 169, 217, 242, 322, 670, 862, 1017, 1163
TfiI	GAWTC	2 cut(s)	695, 1115
Tru1I	TTAA	4 cut(s)	264, 576, 1089, 1166
Tru9I	TTAA	4 cut(s)	264, 576, 1089, 1166
TscAI	CASTG	2 cut(s)	505, 795
TseFI	GTSAC	3 cut(s)	74, 359, 913
TseI	GCWGC	3 cut(s)	704, 707, 1150
Tsp45I	GTSAC	3 cut(s)	74, 359, 913
TspDTI	ATGAA	6 cut(s)	298, 315, 711, 1090, 1118, 1188
TspRI	CASTG	2 cut(s)	505, 795
VpaK11BI	GGWCC	3 cut(s)	132, 303, 1077
XapI	RAATTY	3 cut(s)	169, 242, 670
XbaI	TCTAGA	1 cut(s)	827
XceI	RCATGY	2 cut(s)	394, 741
XspI	CTAG	3 cut(s)	72, 465, 828
Zsp2I	ATGCAT	1 cut(s)	739

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.