Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0006933

Physical Location & Seq

Genomic Coordinates Forward (+)

27454620 .. 27459145

Gene Structure 4526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g25500.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1461 bp

ATGGTCAGTGAAAAGGGAAGCTCAGTGAATGATTCTTTTGTGAAACCAGAAGGCAGTTGGCAGAGTTTGATAAACTCATTCCAGGGTCAGGGGGTTCCAAGAAGTCAGGGGCAGCAGATGGAAGGAAGAGGGCTTTCCGACTTCTATAGGAATACAAGCGAGGAGTTGATCGTGAGATCTTATATGGAAAGCTCAGTTGCAACGCCTCTACCGACCATGGAGATGCTTGGTTTTAAGAATTTGTCTCAAAACTTTCGTACAGATAGCGAGGAACTCTTCAAAAGCTGGCATGGTGTTGAACGAGGAATGCAGGCTAGCGAGCTATACTTGGCTAAGGCCTGGTTTCACAGTTCTCAACCAATGACAAGAAGCCGATCCTCTGAATTGCGGAGGAGGTATGTTGCCATGCAAAACGCTCAAATGCCAGGAGGTCTGGAAGTGATGCAGACTGCTTCAGGGAATAGCAATCTAGCAAAACAGGATTTTGCATTTTCAAATGGTTTCAATGACCCTTCTATTTGTGTGGTCACCAATCAATTGGCGACCTTCATTTCTCCATCCAATTCATCATCGTCCACTTTCAACACCCCACAAATGAGTGAATTGGATAGAGTTTCATCTGTGGTGAGCATGCTAAAGGGTACCTTGGAGCGCAAAAAGCTTAGCAATCAGATCGAGAAAGAAGGTGTGGATGACGATAGCTCCAATGGACGTTTCTCTGTTCAAGAAGGTATCGTCAACATCGGTTTTGATCAAGGGAAAAGGGATCAAATTCATGAAATGGCAGGGGGAACATTTCAGGAAGTATCTACTATCCAAGTTAACAATCATAGAATTAAACAAAATGTTGAAGGTTCACTGGATCTTGAGATGGAAGGTTTTGTAAATATCACAAACCCGAATCCCATAAGCAGGAATTCTCAAGAACCTTCCCAAAGTGAATCATCTGCTGCTGCACCAGTAGTTTCATCTGGTTTTGATGCATGTGACGGTCCCAGCAATTCAAGTCAAACGCTGAGCATTTGTGAAAGTTCAATCAAACGAGCTGGAAGCTCTAGAGCCAAAGATTTCAGAGAACGGATAATTGGAAACTTGAAAGATGATCAAAAGAGTGGGAAACGTTTAGACCGCTACGGATCAGTGACATCAGCTGTTTCAGTGGACAAGGAGGATGCAACAAAAAAACGCAGGGTGGAGAGGTCACGGAAAATGGCGGAGGCAAAGGAAAGGAACTCGACTCCAGTAATTCCATCTGATATACAATCTGTCTTGAAGCGGTGTGAAAATCTTGAAAAGGAAGTGCGATCACTCAAACTTAACTTGTCCTTCATGAATAGGAAGGATTCTGAGCAGACTACGCAGATAGAGGAGCTGCAGAAGCAAAATGAAGATCTAATTGATGAAAAAGAACGGCTCGTAGAGGAGATAGAGAGAGTCCTTTCAGAAACTGGAAAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0036377 GO:0044403 GO:0044419 GO:0051704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

487

Amino Acids

54.16

Weight (kDa)

5.64

Isoelectric Point (pI)

58.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006933)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23980 FvH4_5g23980
malus_domestica	MD00G1002000.v1.1 MD06G1015600.v1.1
prunus_persica	Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1
pyrus_communis	pycom06g01260 pycom16g25500
rosa_chinensis	RchiOBHm_Chr7g0213421
rosa_laevigata	RLG00000002805
rosa_multiflora	Rmu_sc0003740.1_g000017 Rmu_sc0013012.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245920
rosa_rugosa	Rorug07G0142100 Rorug07G0142200
rosa_samantha	Rh7AG274100 Rh7BG269400 Rh7CG293200 Rh7DG281600
rosa_wichuraiana	Rw7G023770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	641
AccB1I	GGYRCC	1 cut(s)	641
AciI	CCGC	4 cut(s)	388, 1129, 1214, 1276
AclI	AACGTT	1 cut(s)	1120
AclWI	GGATC	4 cut(s)	369, 774, 870, 1144
AcsI	RAATTY	3 cut(s)	238, 771, 916
AcuI	CTGAAG	1 cut(s)	438
AfaI	GTAC	2 cut(s)	259, 643
AfiI	CCNNNNNNNGG	2 cut(s)	88, 912
AjnI	CCWGG	3 cut(s)	81, 338, 424
AjuI	GAANNNNNNNTTGG	4 cut(s)	698, 730, 1068, 1100
Alw26I	GTCTC	1 cut(s)	249
AlwI	GGATC	4 cut(s)	369, 774, 870, 1144
AlwNI	CAGNNNCTG	1 cut(s)	1448
AoxI	GGCC	1 cut(s)	336
ApeKI	GCWGC	4 cut(s)	112, 950, 953, 1372
ApoI	RAATTY	3 cut(s)	238, 771, 916
Asp718I	GGTACC	1 cut(s)	641
AspLEI	GCGC	1 cut(s)	654
AspS9I	GGNCC	1 cut(s)	992
AsuHPI	GGTGA	2 cut(s)	520, 637
AsuNHI	GCTAGC	1 cut(s)	314
AvaII	GGWCC	1 cut(s)	992
BanI	GGYRCC	1 cut(s)	641
BbvI	GCAGC	4 cut(s)	124, 937, 940, 1359
BccI	CCATC	4 cut(s)	112, 565, 865, 1258
BceAI	ACGGC	1 cut(s)	1427
BcgI	CGANNNNNNTGC	2 cut(s)	655, 689
BciT130I	CCWGG	3 cut(s)	83, 340, 426
BclI	TGATCA	2 cut(s)	751, 1102
BcoDI	GTCTC	1 cut(s)	249
BfaI	CTAG	3 cut(s)	315, 470, 1056
BfmI	CTRYAG	2 cut(s)	145, 1373
BglII	AGATCT	2 cut(s)	176, 1390
BisI	GCNGC	4 cut(s)	113, 951, 954, 1373
BlpI	GCTNAGC	2 cut(s)	662, 1016
BlsI	GCNGC	4 cut(s)	114, 952, 955, 1374
Bme1390I	CCNGG	3 cut(s)	83, 340, 426
Bme18I	GGWCC	1 cut(s)	992
BmgT120I	GGNCC	1 cut(s)	992
BmiI	GGNNCC	3 cut(s)	96, 643, 994
BmrFI	CCNGG	3 cut(s)	83, 340, 426
BmsI	GCATC	4 cut(s)	213, 432, 970, 1162
BmtI	GCTAGC	1 cut(s)	318
BpmI	CTGGAG	1 cut(s)	1224
Bpu10I	CCTNAGC	1 cut(s)	333
Bpu1102I	GCTNAGC	2 cut(s)	662, 1016
BpuEI	CTTGAG	2 cut(s)	887, 906
BsaJI	CCNNGG	3 cut(s)	82, 216, 645
BsaXI	ACNNNNNCTCC	2 cut(s)	686, 716
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 912
Bse1I	ACTGG	4 cut(s)	864, 959, 1241, 1453
BseBI	CCWGG	3 cut(s)	83, 340, 426
BseDI	CCNNGG	3 cut(s)	82, 216, 645
BseGI	GGATG	3 cut(s)	557, 697, 1177
BseLI	CCNNNNNNNGG	2 cut(s)	88, 912
BseMII	CTCAG	4 cut(s)	36, 207, 1007, 1338
BseNI	ACTGG	4 cut(s)	864, 959, 1241, 1453
BseRI	GAGGAG	4 cut(s)	176, 406, 1382, 1436
BseXI	GCAGC	4 cut(s)	124, 937, 940, 1359
BseYI	CCCAGC	1 cut(s)	995
BsgI	GTGCAG	1 cut(s)	939
BshFI	GGCC	1 cut(s)	338
BshNI	GGYRCC	1 cut(s)	641
BslFI	GGGAC	1 cut(s)	978
BslI	CCNNNNNNNGG	2 cut(s)	88, 912
BsmAI	GTCTC	1 cut(s)	249
BsmFI	GGGAC	1 cut(s)	978
BsmI	GAATGC	1 cut(s)	312
BsnI	GGCC	1 cut(s)	338
Bsp1720I	GCTNAGC	2 cut(s)	662, 1016
Bsp19I	CCATGG	1 cut(s)	216
BspACI	CCGC	4 cut(s)	388, 1129, 1214, 1276
BspANI	GGCC	1 cut(s)	338
BspCNI	CTCAG	4 cut(s)	35, 206, 1008, 1339
BspHI	TCATGA	2 cut(s)	775, 1329
BspLI	GGNNCC	3 cut(s)	96, 643, 994
BspMAI	CTGCAG	1 cut(s)	1377
BspOI	GCTAGC	1 cut(s)	318
BspPI	GGATC	4 cut(s)	369, 774, 870, 1144
BspT107I	GGYRCC	1 cut(s)	641
BsrI	ACTGG	4 cut(s)	864, 959, 1241, 1453
BssECI	CCNNGG	3 cut(s)	82, 216, 645
BssT1I	CCWWGG	2 cut(s)	216, 645
Bst2UI	CCWGG	3 cut(s)	83, 340, 426
Bst4CI	ACNGT	2 cut(s)	350, 992
Bst6I	CTCTTC	2 cut(s)	121, 281
BstC8I	GCNNGC	5 cut(s)	287, 312, 316, 320, 632
BstDEI	CTNAG	6 cut(s)	22, 193, 333, 662, 1016, 1347
BstDSI	CCRYGG	1 cut(s)	216
BstEII	GGTNACC	1 cut(s)	526
BstF5I	GGATG	3 cut(s)	557, 697, 1177
BstHHI	GCGC	1 cut(s)	654
BstMAI	GTCTC	1 cut(s)	249
BstMWI	GCNNNNNNNGC	3 cut(s)	658, 1357, 1378
BstNI	CCWGG	3 cut(s)	83, 340, 426
BstNSI	RCATGY	2 cut(s)	634, 987
BstPI	GGTNACC	1 cut(s)	526
BstSCI	CCNGG	3 cut(s)	81, 338, 424
BstSFI	CTRYAG	2 cut(s)	145, 1373
BstV1I	GCAGC	4 cut(s)	124, 937, 940, 1359
BstX2I	RGATCY	3 cut(s)	176, 862, 1390
BstXI	CCANNNNNNTGG	1 cut(s)	538
BstYI	RGATCY	3 cut(s)	176, 862, 1390
BsuRI	GGCC	1 cut(s)	338
BtgI	CCRYGG	1 cut(s)	216
BtsCI	GGATG	3 cut(s)	557, 697, 1177
BtsIMutI	CAGTG	5 cut(s)	13, 30, 857, 1146, 1164
Cac8I	GCNNGC	5 cut(s)	287, 312, 316, 320, 632
CaiI	CAGNNNCTG	1 cut(s)	1448
CciI	TCATGA	2 cut(s)	775, 1329
CfoI	GCGC	1 cut(s)	654
Cfr13I	GGNCC	1 cut(s)	992
Csp6I	GTAC	2 cut(s)	258, 642
CviAII	CATG	7 cut(s)	217, 290, 406, 631, 776, 984, 1330
CviQI	GTAC	2 cut(s)	258, 642
DdeI	CTNAG	6 cut(s)	22, 193, 333, 662, 1016, 1347
Eam1104I	CTCTTC	2 cut(s)	121, 281
EarI	CTCTTC	2 cut(s)	121, 281
EciI	GGCGGA	1 cut(s)	1229
Eco130I	CCWWGG	2 cut(s)	216, 645
Eco147I	AGGCCT	1 cut(s)	338
Eco47I	GGWCC	1 cut(s)	992
Eco57I	CTGAAG	1 cut(s)	438
Eco91I	GGTNACC	1 cut(s)	526
EcoO65I	GGTNACC	1 cut(s)	526
EcoRI	GAATTC	1 cut(s)	916
EcoRII	CCWGG	3 cut(s)	81, 338, 424
EcoT14I	CCWWGG	2 cut(s)	216, 645
EcoT22I	ATGCAT	1 cut(s)	985
ErhI	CCWWGG	2 cut(s)	216, 645
FaeI	CATG	7 cut(s)	220, 293, 409, 634, 779, 987, 1333
FalI	AAGNNNNNCTT	2 cut(s)	629, 661
FaqI	GGGAC	1 cut(s)	978
FatI	CATG	7 cut(s)	216, 289, 405, 630, 775, 983, 1329
FbaI	TGATCA	2 cut(s)	751, 1102
Fnu4HI	GCNGC	4 cut(s)	113, 951, 954, 1373
FokI	GGATG	3 cut(s)	544, 704, 1184
Fsp4HI	GCNGC	4 cut(s)	113, 951, 954, 1373
FspBI	CTAG	3 cut(s)	315, 470, 1056
GlaI	GCGC	1 cut(s)	653
GluI	GCNGC	4 cut(s)	113, 951, 954, 1373
GsaI	CCCAGC	1 cut(s)	999
GsuI	CTGGAG	1 cut(s)	1224
HaeIII	GGCC	1 cut(s)	338
HhaI	GCGC	1 cut(s)	654
Hin1II	CATG	7 cut(s)	220, 293, 409, 634, 779, 987, 1333
Hin6I	GCGC	1 cut(s)	652
HinP1I	GCGC	1 cut(s)	652
HincII	GTYRAC	2 cut(s)	739, 823
HindII	GTYRAC	2 cut(s)	739, 823
HindIII	AAGCTT	1 cut(s)	659
HinfI	GANTC	6 cut(s)	32, 901, 941, 1237, 1343, 1434
HpaI	GTTAAC	1 cut(s)	823
HphI	GGTGA	2 cut(s)	520, 637
Hpy166II	GTNNAC	5 cut(s)	576, 739, 823, 857, 1162
Hpy188I	TCNGA	7 cut(s)	139, 382, 672, 1073, 1255, 1348, 1444
Hpy8I	GTNNAC	5 cut(s)	576, 739, 823, 857, 1162
HpyCH4III	ACNGT	2 cut(s)	350, 992
HpyCH4IV	ACGT	2 cut(s)	712, 1120
HpyCH4V	TGCA	9 cut(s)	200, 310, 409, 445, 488, 956, 983, 1175, 1375
HpyF10VI	GCNNNNNNNGC	3 cut(s)	658, 1357, 1378
HpyF3I	CTNAG	6 cut(s)	22, 193, 333, 662, 1016, 1347
HpySE526I	ACGT	2 cut(s)	712, 1120
Hsp92II	CATG	7 cut(s)	220, 293, 409, 634, 779, 987, 1333
HspAI	GCGC	1 cut(s)	652
KpnI	GGTACC	1 cut(s)	645
Ksp22I	TGATCA	2 cut(s)	751, 1102
KspAI	GTTAAC	1 cut(s)	823
LmnI	GCTCC	3 cut(s)	649, 707, 1369
Lsp1109I	GCAGC	4 cut(s)	124, 937, 940, 1359
LweI	GCATC	4 cut(s)	213, 432, 970, 1162
MaeI	CTAG	3 cut(s)	315, 470, 1056
MaeII	ACGT	2 cut(s)	712, 1120
MaeIII	GTNAC	4 cut(s)	526, 986, 1141, 1200
MboII	GAAGA	3 cut(s)	138, 268, 1400
MfeI	CAATTG	1 cut(s)	536
MflI	RGATCY	3 cut(s)	176, 862, 1390
MlyI	GAGTC	2 cut(s)	1231, 1443
MmeI	TCCRAC	1 cut(s)	162
Mph1103I	ATGCAT	1 cut(s)	985
MseI	TTAA	4 cut(s)	234, 822, 837, 1317
MslI	CAYNNNNRTG	1 cut(s)	221
MspA1I	CMGCKG	1 cut(s)	1151
MspR9I	CCNGG	3 cut(s)	83, 340, 426
MunI	CAATTG	1 cut(s)	536
Mva1269I	GAATGC	1 cut(s)	312
MvaI	CCWGG	3 cut(s)	83, 340, 426
MwoI	GCNNNNNNNGC	3 cut(s)	658, 1357, 1378
NcoI	CCATGG	1 cut(s)	216
NheI	GCTAGC	1 cut(s)	314
NlaIII	CATG	7 cut(s)	220, 293, 409, 634, 779, 987, 1333
NlaIV	GGNNCC	3 cut(s)	96, 643, 994
NmuCI	GTSAC	4 cut(s)	526, 986, 1141, 1200
NsiI	ATGCAT	1 cut(s)	985
NspI	RCATGY	2 cut(s)	634, 987
PaeI	GCATGC	1 cut(s)	634
PagI	TCATGA	2 cut(s)	775, 1329
PceI	AGGCCT	1 cut(s)	338
PcsI	WCGNNNNNNNCGW	1 cut(s)	209
PctI	GAATGC	1 cut(s)	312
PfeI	GAWTC	4 cut(s)	32, 901, 941, 1343
PkrI	GCNGC	4 cut(s)	114, 952, 955, 1374
PleI	GAGTC	2 cut(s)	1231, 1442
PpsI	GAGTC	2 cut(s)	1231, 1442
Psp1406I	AACGTT	1 cut(s)	1120
Psp6I	CCWGG	3 cut(s)	81, 338, 424
PspEI	GGTNACC	1 cut(s)	526
PspFI	CCCAGC	1 cut(s)	995
PspGI	CCWGG	3 cut(s)	81, 338, 424
PspN4I	GGNNCC	3 cut(s)	96, 643, 994
PspPI	GGNCC	1 cut(s)	992
PstI	CTGCAG	1 cut(s)	1377
PstNI	CAGNNNCTG	1 cut(s)	1448
PsuI	RGATCY	3 cut(s)	176, 862, 1390
PvuII	CAGCTG	1 cut(s)	1151
RsaI	GTAC	2 cut(s)	259, 643
RsaNI	GTAC	2 cut(s)	258, 642
RseI	CAYNNNNRTG	1 cut(s)	221
SaqAI	TTAA	4 cut(s)	234, 822, 837, 1317
SatI	GCNGC	4 cut(s)	113, 951, 954, 1373
Sau96I	GGNCC	1 cut(s)	992
SchI	GAGTC	2 cut(s)	1231, 1443
ScrFI	CCNGG	3 cut(s)	83, 340, 426
SfaNI	GCATC	4 cut(s)	213, 432, 970, 1162
SfcI	CTRYAG	2 cut(s)	145, 1373
SinI	GGWCC	1 cut(s)	992
SmiMI	CAYNNNNRTG	1 cut(s)	221
SmlI	CTYRAG	2 cut(s)	866, 921
SmoI	CTYRAG	2 cut(s)	866, 921
SphI	GCATGC	1 cut(s)	634
SseBI	AGGCCT	1 cut(s)	338
SsiI	CCGC	4 cut(s)	388, 1129, 1214, 1276
SspMI	CTAG	3 cut(s)	315, 470, 1056
StuI	AGGCCT	1 cut(s)	338
StyD4I	CCNGG	3 cut(s)	81, 338, 424
StyI	CCWWGG	2 cut(s)	216, 645
TaaI	ACNGT	2 cut(s)	350, 992
TaiI	ACGT	2 cut(s)	715, 1123
TaqI	TCGA	2 cut(s)	675, 1235
TfiI	GAWTC	4 cut(s)	32, 901, 941, 1343
Tru1I	TTAA	4 cut(s)	234, 822, 837, 1317
Tru9I	TTAA	4 cut(s)	234, 822, 837, 1317
TscAI	CASTG	5 cut(s)	13, 30, 864, 1146, 1164
TseFI	GTSAC	4 cut(s)	526, 986, 1141, 1200
TseI	GCWGC	4 cut(s)	112, 950, 953, 1372
Tsp45I	GTSAC	4 cut(s)	526, 986, 1141, 1200
TspGWI	ACGGA	3 cut(s)	1093, 1149, 1219
TspRI	CASTG	5 cut(s)	13, 30, 864, 1146, 1164
VpaK11BI	GGWCC	1 cut(s)	992
XapI	RAATTY	3 cut(s)	238, 771, 916
XbaI	TCTAGA	1 cut(s)	1055
XceI	RCATGY	2 cut(s)	634, 987
XcmI	CCANNNNNNNNNTGG	1 cut(s)	54
XspI	CTAG	3 cut(s)	315, 470, 1056
Zsp2I	ATGCAT	1 cut(s)	985

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.