Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0006933

Physical Location & Seq

Genomic Coordinates Forward (+)

412057 .. 419132

Gene Structure 7076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1002000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1581 bp

ATGGTTCCAAGAAGTCAGGGGCAGCAGATGGAAGGAAGAGGGCATTCCGACTTCTATAGAAATACAAGCGAGGAGTTGATCCTGAGATCTTATATGGAAAGCTCGGTTGCAACGCCTCTACCGACCATGGAGATGCTTGGTTTTAAGAATTTGTCTCAAAACTTTCGTACAGATAGCGAGGAACTCTTCAAAAGCTGGCTTACAACTGGAGAGACCAATTGCTACAATTCATCAAGCATTGCACATCGTACCCGATCACGGATGATATCTACCGAAATAGCTAGCTTGTCGTCGGGTCAGCAACATGTCGGTATTCTTCAAAAGAAAAGAAGCAATGATTGTTTATATCCACCAATTAATACCATGCCTGATGAAATCTCAGGTGACAACAATCAGAGTTCAATCAGGCATGGTGTTGAACGAGGAATGCAGGCTAGCGAGCTATACTTGGCTAAGGCCTGGTTTCACAGTTCTCAACCAATGACAAGAAGCCGATCCTCTGAATTGCGAAGGAGGTATGTCGCCATGCAAAACGCTCAAATGCCAGGAGATCTGGAAGTGATGCAGACTGCTTCAGGGAATAGCAATCTAGCAAAACAGGATTTTGCGTTTTCAAATGGTTTCAATGACCCTTCTATTTGTGTGGTCACCAACCAATTGGCGACCTTCATTTCTCCATCCAATTCATCATCGTCCACTTTCAACACCCCACAAATGAGTGAATTGGATAAAGTTTCATCTGTGGTGAGCATGCTAAAGGGTACCTTGGAGCTCAAAAAGCTTAGCAATCAGATTGAGAAAGAAGGTGTGGATGACGATAGCTCCAACGGACGTTTCTCTGTTCAAGAAGGTATCGTCAACATCGGTTTTGATCAAGGGAAAAGGGATCAAATTCATGAAATGGCAGCAGGAACATTTCAGGAAGTATCTACTATCCAAGTTAACGATCATAGAATTAAACAAAATGTTGAAGGTTCACTGGATCTTGAGATGGAAGGTTTTGTAAATATCACAAACCCGAATCCCATAAGCAGGAATTCTCAAGAACCTTCCCAAAGTGAATCATCTGCTGCTGCACCACTAGTTTCATCTGGTTTTGATGCATGTGACGGTCCCAGCAATTCAAGTCAAACGCTGAGCATTTGTGAAAGTTCAATCAAACGAGCTGGAAGCTCTAGAGCCAAAGATTTCAGAGAACCGATAATTAGAAATTTGAAAGATGATCAAAAGAGTGGGAAACGTTTAGACCGCTATGGATCAGTGACATCAGCTGTTTCAGTGGACAAGGAGGATGCAACAAAAAAACGCAGGGTGGATAGGTCACGGAAAATGGCGGAGGCAAAGGAAAGGAACTCAACTCCAGTAATTCCATCTGATATACAATCTGTCTTGAAGCGGTGTGAAAATCTTGAAAAGGAAGTGCGATCACTCAAACTTAACTTGTCCTTCATGAATAGGAAGGATTCTGAGCAGACTAAGCAGATAGAGGAGCTCCAGAAGCAAAATGAAGATCTAATGGATGAAAAAGAACAGCTCGTAGAGGAGATAGAGAGAGTCCTTTCAGAAACTGGAAAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0036377 GO:0044403 GO:0044419 GO:0051704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

527

Amino Acids

58.77

Weight (kDa)

5.75

Isoelectric Point (pI)

61.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006933)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23980 FvH4_5g23980
malus_domestica	MD00G1002000.v1.1 MD06G1015600.v1.1
prunus_persica	Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1
pyrus_communis	pycom06g01260 pycom16g25500
rosa_chinensis	RchiOBHm_Chr7g0213421
rosa_laevigata	RLG00000002805
rosa_multiflora	Rmu_sc0003740.1_g000017 Rmu_sc0013012.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245920
rosa_rugosa	Rorug07G0142100 Rorug07G0142200
rosa_samantha	Rh7AG274100 Rh7BG269400 Rh7CG293200 Rh7DG281600
rosa_wichuraiana	Rw7G023770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	761
AccB1I	GGYRCC	1 cut(s)	761
AciI	CCGC	3 cut(s)	1249, 1334, 1396
AclI	AACGTT	1 cut(s)	1240
AclWI	GGATC	5 cut(s)	73, 489, 894, 990, 1264
AcsI	RAATTY	4 cut(s)	148, 891, 1036, 1210
AcuI	CTGAAG	1 cut(s)	558
AfaI	GTAC	3 cut(s)	169, 250, 763
AfiI	CCNNNNNNNGG	2 cut(s)	258, 1032
AflIII	ACRYGT	1 cut(s)	304
AhlI	ACTAGT	1 cut(s)	1081
AjnI	CCWGG	2 cut(s)	458, 544
AjuI	GAANNNNNNNTTGG	2 cut(s)	818, 850
Alw21I	GWGCWC	2 cut(s)	774, 1494
Alw26I	GTCTC	2 cut(s)	159, 206
AlwI	GGATC	5 cut(s)	73, 489, 894, 990, 1264
AlwNI	CAGNNNCTG	1 cut(s)	1568
AoxI	GGCC	1 cut(s)	456
ApeKI	GCWGC	4 cut(s)	22, 905, 1070, 1073
ApoI	RAATTY	4 cut(s)	148, 891, 1036, 1210
AseI	ATTAAT	1 cut(s)	357
Asp718I	GGTACC	1 cut(s)	761
AspS9I	GGNCC	1 cut(s)	1112
AsuHPI	GGTGA	3 cut(s)	395, 640, 757
AsuNHI	GCTAGC	2 cut(s)	281, 434
AvaII	GGWCC	1 cut(s)	1112
BanI	GGYRCC	1 cut(s)	761
BanII	GRGCYC	2 cut(s)	774, 1494
Bbv12I	GWGCWC	2 cut(s)	774, 1494
BbvI	GCAGC	4 cut(s)	34, 917, 1057, 1060
BccI	CCATC	4 cut(s)	22, 685, 985, 1378
BciT130I	CCWGG	2 cut(s)	460, 546
BclI	TGATCA	2 cut(s)	871, 1222
BcoDI	GTCTC	2 cut(s)	159, 206
BcuI	ACTAGT	1 cut(s)	1081
BfaI	CTAG	5 cut(s)	282, 435, 590, 1082, 1176
BfmI	CTRYAG	1 cut(s)	55
BglII	AGATCT	3 cut(s)	86, 550, 1510
BisI	GCNGC	4 cut(s)	23, 906, 1071, 1074
BlpI	GCTNAGC	2 cut(s)	782, 1136
BlsI	GCNGC	4 cut(s)	24, 907, 1072, 1075
Bme1390I	CCNGG	2 cut(s)	460, 546
Bme18I	GGWCC	1 cut(s)	1112
BmgT120I	GGNCC	1 cut(s)	1112
BmiI	GGNNCC	3 cut(s)	6, 763, 1114
BmrFI	CCNGG	2 cut(s)	460, 546
BmsI	GCATC	4 cut(s)	123, 552, 1090, 1282
BmtI	GCTAGC	2 cut(s)	285, 438
BpmI	CTGGAG	3 cut(s)	228, 1344, 1478
Bpu10I	CCTNAGC	1 cut(s)	453
Bpu1102I	GCTNAGC	2 cut(s)	782, 1136
BpuEI	CTTGAG	2 cut(s)	1007, 1026
BsaI	GGTCTC	1 cut(s)	206
BsaJI	CCNNGG	2 cut(s)	126, 765
BsaXI	ACNNNNNCTCC	2 cut(s)	806, 836
Bsc4I	CCNNNNNNNGG	2 cut(s)	258, 1032
Bse1I	ACTGG	4 cut(s)	211, 984, 1361, 1573
Bse3DI	GCAATG	2 cut(s)	237, 340
BseBI	CCWGG	2 cut(s)	460, 546
BseDI	CCNNGG	2 cut(s)	126, 765
BseGI	GGATG	5 cut(s)	267, 677, 817, 1297, 1525
BseLI	CCNNNNNNNGG	2 cut(s)	258, 1032
BseMI	GCAATG	2 cut(s)	237, 340
BseMII	CTCAG	4 cut(s)	74, 393, 1127, 1458
BseNI	ACTGG	4 cut(s)	211, 984, 1361, 1573
BseRI	GAGGAG	3 cut(s)	86, 1502, 1556
BseXI	GCAGC	4 cut(s)	34, 917, 1057, 1060
BseYI	CCCAGC	1 cut(s)	1115
BsgI	GTGCAG	1 cut(s)	1059
BshFI	GGCC	1 cut(s)	458
BshNI	GGYRCC	1 cut(s)	761
BsiHKAI	GWGCWC	2 cut(s)	774, 1494
BslFI	GGGAC	1 cut(s)	1098
BslI	CCNNNNNNNGG	2 cut(s)	258, 1032
BsmAI	GTCTC	2 cut(s)	159, 206
BsmFI	GGGAC	1 cut(s)	1098
BsmI	GAATGC	2 cut(s)	43, 432
BsnI	GGCC	1 cut(s)	458
Bso31I	GGTCTC	1 cut(s)	206
Bsp1286I	GDGCHC	2 cut(s)	774, 1494
Bsp1720I	GCTNAGC	2 cut(s)	782, 1136
Bsp19I	CCATGG	1 cut(s)	126
BspACI	CCGC	3 cut(s)	1249, 1334, 1396
BspANI	GGCC	1 cut(s)	458
BspCNI	CTCAG	4 cut(s)	75, 392, 1128, 1459
BspHI	TCATGA	2 cut(s)	895, 1449
BspLI	GGNNCC	3 cut(s)	6, 763, 1114
BspOI	GCTAGC	2 cut(s)	285, 438
BspPI	GGATC	5 cut(s)	73, 489, 894, 990, 1264
BspT107I	GGYRCC	1 cut(s)	761
BspTNI	GGTCTC	1 cut(s)	206
BsrDI	GCAATG	2 cut(s)	237, 340
BsrI	ACTGG	4 cut(s)	211, 984, 1361, 1573
BssECI	CCNNGG	2 cut(s)	126, 765
BssT1I	CCWWGG	2 cut(s)	126, 765
Bst2UI	CCWGG	2 cut(s)	460, 546
Bst4CI	ACNGT	2 cut(s)	470, 1112
Bst6I	CTCTTC	2 cut(s)	31, 191
BstC8I	GCNNGC	6 cut(s)	197, 283, 432, 436, 440, 752
BstDEI	CTNAG	7 cut(s)	83, 379, 453, 782, 1136, 1467, 1476
BstDSI	CCRYGG	1 cut(s)	126
BstEII	GGTNACC	1 cut(s)	646
BstF5I	GGATG	5 cut(s)	267, 677, 817, 1297, 1525
BstMAI	GTCTC	2 cut(s)	159, 206
BstMWI	GCNNNNNNNGC	3 cut(s)	778, 1477, 1498
BstNI	CCWGG	2 cut(s)	460, 546
BstNSI	RCATGY	3 cut(s)	308, 754, 1107
BstPI	GGTNACC	1 cut(s)	646
BstSCI	CCNGG	2 cut(s)	458, 544
BstSFI	CTRYAG	1 cut(s)	55
BstV1I	GCAGC	4 cut(s)	34, 917, 1057, 1060
BstX2I	RGATCY	4 cut(s)	86, 550, 982, 1510
BstXI	CCANNNNNNTGG	1 cut(s)	658
BstYI	RGATCY	4 cut(s)	86, 550, 982, 1510
BsuRI	GGCC	1 cut(s)	458
BtgI	CCRYGG	1 cut(s)	126
BtsCI	GGATG	5 cut(s)	267, 677, 817, 1297, 1525
BtsIMutI	CAGTG	3 cut(s)	977, 1266, 1284
Cac8I	GCNNGC	6 cut(s)	197, 283, 432, 436, 440, 752
CaiI	CAGNNNCTG	1 cut(s)	1568
CciI	TCATGA	2 cut(s)	895, 1449
Cfr13I	GGNCC	1 cut(s)	1112
Csp6I	GTAC	3 cut(s)	168, 249, 762
CviAII	CATG	9 cut(s)	127, 305, 364, 410, 526, 751, 896, 1104, 1450
CviQI	GTAC	3 cut(s)	168, 249, 762
DdeI	CTNAG	7 cut(s)	83, 379, 453, 782, 1136, 1467, 1476
Eam1104I	CTCTTC	2 cut(s)	31, 191
EarI	CTCTTC	2 cut(s)	31, 191
EciI	GGCGGA	1 cut(s)	1349
Ecl136II	GAGCTC	2 cut(s)	772, 1492
Eco130I	CCWWGG	2 cut(s)	126, 765
Eco147I	AGGCCT	1 cut(s)	458
Eco24I	GRGCYC	2 cut(s)	774, 1494
Eco31I	GGTCTC	1 cut(s)	206
Eco32I	GATATC	1 cut(s)	267
Eco47I	GGWCC	1 cut(s)	1112
Eco53kI	GAGCTC	2 cut(s)	772, 1492
Eco57I	CTGAAG	1 cut(s)	558
Eco91I	GGTNACC	1 cut(s)	646
EcoICRI	GAGCTC	2 cut(s)	772, 1492
EcoO65I	GGTNACC	1 cut(s)	646
EcoRI	GAATTC	1 cut(s)	1036
EcoRII	CCWGG	2 cut(s)	458, 544
EcoRV	GATATC	1 cut(s)	267
EcoT14I	CCWWGG	2 cut(s)	126, 765
EcoT22I	ATGCAT	1 cut(s)	1105
EcoT38I	GRGCYC	2 cut(s)	774, 1494
ErhI	CCWWGG	2 cut(s)	126, 765
FaeI	CATG	9 cut(s)	130, 308, 367, 413, 529, 754, 899, 1107, 1453
FalI	AAGNNNNNCTT	2 cut(s)	749, 781
FaqI	GGGAC	1 cut(s)	1098
FatI	CATG	9 cut(s)	126, 304, 363, 409, 525, 750, 895, 1103, 1449
FbaI	TGATCA	2 cut(s)	871, 1222
Fnu4HI	GCNGC	4 cut(s)	23, 906, 1071, 1074
FokI	GGATG	5 cut(s)	274, 664, 824, 1304, 1532
FriOI	GRGCYC	2 cut(s)	774, 1494
Fsp4HI	GCNGC	4 cut(s)	23, 906, 1071, 1074
FspBI	CTAG	5 cut(s)	282, 435, 590, 1082, 1176
GluI	GCNGC	4 cut(s)	23, 906, 1071, 1074
GsaI	CCCAGC	1 cut(s)	1119
GsuI	CTGGAG	3 cut(s)	228, 1344, 1478
HaeIII	GGCC	1 cut(s)	458
Hin1II	CATG	9 cut(s)	130, 308, 367, 413, 529, 754, 899, 1107, 1453
HincII	GTYRAC	2 cut(s)	859, 943
HindII	GTYRAC	2 cut(s)	859, 943
HindIII	AAGCTT	1 cut(s)	779
HinfI	GANTC	4 cut(s)	1021, 1061, 1463, 1554
HpaI	GTTAAC	1 cut(s)	943
HphI	GGTGA	3 cut(s)	395, 640, 757
Hpy166II	GTNNAC	5 cut(s)	696, 859, 943, 977, 1282
Hpy188I	TCNGA	8 cut(s)	49, 396, 502, 792, 1193, 1375, 1468, 1564
Hpy8I	GTNNAC	5 cut(s)	696, 859, 943, 977, 1282
Hpy99I	CGWCG	1 cut(s)	295
HpyCH4III	ACNGT	2 cut(s)	470, 1112
HpyCH4IV	ACGT	2 cut(s)	832, 1240
HpyCH4V	TGCA	8 cut(s)	110, 242, 430, 529, 565, 1076, 1103, 1295
HpyF10VI	GCNNNNNNNGC	3 cut(s)	778, 1477, 1498
HpyF3I	CTNAG	7 cut(s)	83, 379, 453, 782, 1136, 1467, 1476
HpySE526I	ACGT	2 cut(s)	832, 1240
Hsp92II	CATG	9 cut(s)	130, 308, 367, 413, 529, 754, 899, 1107, 1453
KpnI	GGTACC	1 cut(s)	765
Ksp22I	TGATCA	2 cut(s)	871, 1222
KspAI	GTTAAC	1 cut(s)	943
LmnI	GCTCC	4 cut(s)	769, 827, 1489, 1497
Lsp1109I	GCAGC	4 cut(s)	34, 917, 1057, 1060
LweI	GCATC	4 cut(s)	123, 552, 1090, 1282
MaeI	CTAG	5 cut(s)	282, 435, 590, 1082, 1176
MaeII	ACGT	2 cut(s)	832, 1240
MaeIII	GTNAC	5 cut(s)	383, 646, 1106, 1261, 1320
MboII	GAAGA	4 cut(s)	48, 178, 308, 1520
MfeI	CAATTG	2 cut(s)	217, 656
MflI	RGATCY	4 cut(s)	86, 550, 982, 1510
MhlI	GDGCHC	2 cut(s)	774, 1494
MlyI	GAGTC	1 cut(s)	1563
MmeI	TCCRAC	2 cut(s)	72, 849
Mph1103I	ATGCAT	1 cut(s)	1105
MseI	TTAA	5 cut(s)	144, 357, 942, 957, 1437
MslI	CAYNNNNRTG	1 cut(s)	131
MspA1I	CMGCKG	1 cut(s)	1271
MspR9I	CCNGG	2 cut(s)	460, 546
MunI	CAATTG	2 cut(s)	217, 656
Mva1269I	GAATGC	2 cut(s)	43, 432
MvaI	CCWGG	2 cut(s)	460, 546
MwoI	GCNNNNNNNGC	3 cut(s)	778, 1477, 1498
NcoI	CCATGG	1 cut(s)	126
NheI	GCTAGC	2 cut(s)	281, 434
NlaIII	CATG	9 cut(s)	130, 308, 367, 413, 529, 754, 899, 1107, 1453
NlaIV	GGNNCC	3 cut(s)	6, 763, 1114
NmuCI	GTSAC	5 cut(s)	383, 646, 1106, 1261, 1320
NsiI	ATGCAT	1 cut(s)	1105
NspI	RCATGY	3 cut(s)	308, 754, 1107
PaeI	GCATGC	1 cut(s)	754
PagI	TCATGA	2 cut(s)	895, 1449
PceI	AGGCCT	1 cut(s)	458
PciI	ACATGT	1 cut(s)	304
PcsI	WCGNNNNNNNCGW	1 cut(s)	119
PctI	GAATGC	2 cut(s)	43, 432
PfeI	GAWTC	3 cut(s)	1021, 1061, 1463
PkrI	GCNGC	4 cut(s)	24, 907, 1072, 1075
PleI	GAGTC	1 cut(s)	1562
PpsI	GAGTC	1 cut(s)	1562
PscI	ACATGT	1 cut(s)	304
PshBI	ATTAAT	1 cut(s)	357
Psp124BI	GAGCTC	2 cut(s)	774, 1494
Psp1406I	AACGTT	1 cut(s)	1240
Psp6I	CCWGG	2 cut(s)	458, 544
PspEI	GGTNACC	1 cut(s)	646
PspFI	CCCAGC	1 cut(s)	1115
PspGI	CCWGG	2 cut(s)	458, 544
PspN4I	GGNNCC	3 cut(s)	6, 763, 1114
PspPI	GGNCC	1 cut(s)	1112
PstNI	CAGNNNCTG	1 cut(s)	1568
PsuI	RGATCY	4 cut(s)	86, 550, 982, 1510
PvuII	CAGCTG	1 cut(s)	1271
RsaI	GTAC	3 cut(s)	169, 250, 763
RsaNI	GTAC	3 cut(s)	168, 249, 762
RseI	CAYNNNNRTG	1 cut(s)	131
SacI	GAGCTC	2 cut(s)	774, 1494
SaqAI	TTAA	5 cut(s)	144, 357, 942, 957, 1437
SatI	GCNGC	4 cut(s)	23, 906, 1071, 1074
Sau96I	GGNCC	1 cut(s)	1112
SchI	GAGTC	1 cut(s)	1563
ScrFI	CCNGG	2 cut(s)	460, 546
SduI	GDGCHC	2 cut(s)	774, 1494
SfaNI	GCATC	4 cut(s)	123, 552, 1090, 1282
SfcI	CTRYAG	1 cut(s)	55
SinI	GGWCC	1 cut(s)	1112
SmiMI	CAYNNNNRTG	1 cut(s)	131
SmlI	CTYRAG	2 cut(s)	986, 1041
SmoI	CTYRAG	2 cut(s)	986, 1041
SpeI	ACTAGT	1 cut(s)	1081
SphI	GCATGC	1 cut(s)	754
SseBI	AGGCCT	1 cut(s)	458
SsiI	CCGC	3 cut(s)	1249, 1334, 1396
SspMI	CTAG	5 cut(s)	282, 435, 590, 1082, 1176
SstI	GAGCTC	2 cut(s)	774, 1494
StuI	AGGCCT	1 cut(s)	458
StyD4I	CCNGG	2 cut(s)	458, 544
StyI	CCWWGG	2 cut(s)	126, 765
TaaI	ACNGT	2 cut(s)	470, 1112
TaiI	ACGT	2 cut(s)	835, 1243
TfiI	GAWTC	3 cut(s)	1021, 1061, 1463
Tru1I	TTAA	5 cut(s)	144, 357, 942, 957, 1437
Tru9I	TTAA	5 cut(s)	144, 357, 942, 957, 1437
TscAI	CASTG	3 cut(s)	984, 1266, 1284
TseFI	GTSAC	5 cut(s)	383, 646, 1106, 1261, 1320
TseI	GCWGC	4 cut(s)	22, 905, 1070, 1073
Tsp45I	GTSAC	5 cut(s)	383, 646, 1106, 1261, 1320
TspGWI	ACGGA	3 cut(s)	274, 843, 1339
TspRI	CASTG	3 cut(s)	984, 1266, 1284
VpaK11BI	GGWCC	1 cut(s)	1112
VspI	ATTAAT	1 cut(s)	357
XapI	RAATTY	4 cut(s)	148, 891, 1036, 1210
XbaI	TCTAGA	1 cut(s)	1175
XceI	RCATGY	3 cut(s)	308, 754, 1107
XspI	CTAG	5 cut(s)	282, 435, 590, 1082, 1176
Zsp2I	ATGCAT	1 cut(s)	1105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.