RLG00000002805

arbuscular mycorrhizal association

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
40103781 .. 40108766
4986 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002805

Sequence Viewer

Length: 1566 bp
ATGGAAGGAAGGGGGCTTTCAGACTTCTATAGGAATACTAGTGAAGAGTTGATCCTGAGATCTTATATGGAGAGCTCAAATGGAACTCCTCTACCAACCATGGAGATGCTTGGCTTCAAGAATTTGTCACAAAATTTTCGTGCAGATAGCGAGGAGCTCTTCAAAAGCTGGCTCACAACTGGAGAGAACAATACCTACAATTCCTCAAGCATTGCACATCGAACTCGGTCAAGGAGGATATCCACCGAAATAGCTAGTTTGTCTGCTCACCAACATGTTGGTCTACTTCAAAAGAAAAGAAGCAATGAAGTTTTATTTCCTCAATATAACCCCATGCCTGATGAGAACTCAGCTGACCTCAATCAACATTCAAACAGACTTGGTGTTGAAAGAGGAATGCAAGCTAGTGACTTATATTTGGCTAAGGCCTGGTTTCACAGTTCCCAACCCATGACAAGAAGCCGGTCCTCTGAATTGCGGAAGAGATATGTTGCCTTGCAAAATTCTCAACCAGCGATAGGTCTGGATGGCCTGCAAAATGCTTCAGGGAATTATAATAATGTAGTTAAAGAAGAATTTGCATTTTCAAATGGCTTTAATGTTCCCTCAATATGTGAGGTTTCTAACCAGTTGGGGACCTTCATTTCTCCATCCAATTCATCCTCATCCACTTTCGACGCCCCTCAAATGGGTGACATGGATAAAGTATCATCTGTTGTGAGCATGCTAAAGGGTACATTAGAGCGCAAAAAGCTTAGCAACCAGGTTGAAAAAGGTGCAGAGGATGATAGCTCCACTAGGCTTTTCCCTGGTCAAGAAATTTTAGTCAACACTGGTTTTGATCAAGGGCAAGGTAATCAGCTTCAAGATATGGTGAGAACTTTTCAGGAAGTATCCACTATCGAAGTTAAGGGTCACGGGAGTATGCAAAAAGCTGAAGGATCCCTGGATCTTGAGATGGAAGGTTTTGTAAATCTCACAAACCCAAACCCGTTGAGCAGGAATTCTCAAGAACCTTCACAAAGTGAATCATCTGCTGCAGCACCAGTAGTTTCATCTGGGTTTGATGCATGTGATGGTCCCAGCAACTCAAGTCAAACTCTGAGCATATGTGAAAGTTCACTGAAACGAGCTGGAAATAGGAGTTCAGAAAATGGCTCTAGATCGAAAGACATCAGAGAACGTATTATTGGTAATTTGAAAGATGATCAAAAGAGGGGAGAACGTTTAGAGCGATATGGATCTGTGACATCAGCTACTTCAGGAGATAAGGAGGATGCCACAAAAAAGCGGAGGGTGGAGAGATCACGCAAAATGGCAGAGGCAAAGGAAAGGAACTCAACTCCAGTAATTCCATCAGATATACAATCTGTCTTGAAGCGGTGTGAAAATCTTGAAAAGGAAGTCCGGTCCCTCAAACTTAACTTGTCCTTCATGAATAGGAAGGATTCCGAGCAGACAAAGCAGATAGAGGAGCTTCAGCAGCAAAACGAAGAATTAGCATATGAAAAGGAGCGCCTTTTAGAAGAGATTGAAAGGATCCTTGCAGAAAATGGCAAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

522

Amino Acids

58.17

Weight (kDa)

5.81

Isoelectric Point (pI)

58.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 555
AccI GTMKAC 1 cut(s) 283
AciI CCGC 3 cut(s) 478, 1291, 1381
AclI AACGTT 1 cut(s) 1225
AclWI GGATC 7 cut(s) 46, 936, 949, 957, 1249, 1534, 1547
AcsI RAATTY 6 cut(s) 121, 133, 502, 575, 819, 1003
AcuI CTGAAG 4 cut(s) 528, 957, 1245, 1463
AcyI GRCGYC 1 cut(s) 678
AdeI CACNNNGTG 1 cut(s) 1025
AfaI GTAC 1 cut(s) 736
AfiI CCNNNNNNNGG 3 cut(s) 518, 688, 689
AflIII ACRYGT 1 cut(s) 274
AhlI ACTAGT 1 cut(s) 38
AjnI CCWGG 4 cut(s) 428, 762, 808, 945
AjuI GAANNNNNNNTTGG 2 cut(s) 1173, 1205
Alw21I GWGCWC 2 cut(s) 77, 159
AlwI GGATC 7 cut(s) 46, 936, 949, 957, 1249, 1534, 1547
AoxI GGCC 2 cut(s) 426, 529
ApeKI GCWGC 3 cut(s) 1037, 1040, 1483
ApoI RAATTY 6 cut(s) 121, 133, 502, 575, 819, 1003
AspLEI GCGC 2 cut(s) 747, 1518
AspS9I GGNCC 4 cut(s) 465, 636, 1079, 1410
AsuHPI GGTGA 3 cut(s) 260, 704, 886
AvaII GGWCC 4 cut(s) 465, 636, 1079, 1410
BamHI GGATCC 2 cut(s) 941, 1539
BanII GRGCYC 2 cut(s) 77, 159
Bbv12I GWGCWC 2 cut(s) 77, 159
BbvI GCAGC 3 cut(s) 1024, 1052, 1495
BccI CCATC 5 cut(s) 521, 658, 952, 1070, 1363
BciT130I CCWGG 4 cut(s) 430, 764, 810, 947
BciVI GTATCC 1 cut(s) 904
BclI TGATCA 2 cut(s) 841, 1207
BcuI ACTAGT 1 cut(s) 38
BfaI CTAG 5 cut(s) 39, 255, 405, 798, 1161
BfmI CTRYAG 2 cut(s) 28, 1038
BfoI RGCGCY 1 cut(s) 1519
BfuI GTATCC 1 cut(s) 904
BglII AGATCT 1 cut(s) 59
BisI GCNGC 3 cut(s) 1038, 1041, 1484
BlpI GCTNAGC 1 cut(s) 755
BlsI GCNGC 3 cut(s) 1039, 1042, 1485
Bme1390I CCNGG 4 cut(s) 430, 764, 810, 947
Bme18I GGWCC 4 cut(s) 465, 636, 1079, 1410
BmgT120I GGNCC 4 cut(s) 465, 636, 1079, 1410
BmiI GGNNCC 5 cut(s) 637, 943, 1081, 1412, 1541
BmrFI CCNGG 4 cut(s) 430, 764, 810, 947
BmsI GCATC 3 cut(s) 96, 1057, 1267
BpmI CTGGAG 2 cut(s) 201, 1329
Bpu10I CCTNAGC 1 cut(s) 423
Bpu1102I GCTNAGC 1 cut(s) 755
BpuEI CTTGAG 4 cut(s) 190, 974, 993, 1075
BsaBI GATNNNNATC 1 cut(s) 1240
BsaHI GRCGYC 1 cut(s) 678
BsaJI CCNNGG 3 cut(s) 99, 808, 945
BsaWI WCCGGW 1 cut(s) 1407
Bsc4I CCNNNNNNNGG 3 cut(s) 518, 688, 689
Bse118I RCCGGY 1 cut(s) 462
Bse1I ACTGG 5 cut(s) 184, 628, 838, 1046, 1346
Bse3DI GCAATG 2 cut(s) 210, 310
Bse8I GATNNNNATC 1 cut(s) 1240
BseBI CCWGG 4 cut(s) 430, 764, 810, 947
BseDI CCNNGG 3 cut(s) 99, 808, 945
BseGI GGATG 6 cut(s) 532, 650, 659, 665, 790, 1282
BseJI GATNNNNATC 1 cut(s) 1240
BseLI CCNNNNNNNGG 3 cut(s) 518, 688, 689
BseMI GCAATG 2 cut(s) 210, 310
BseMII CTCAG 3 cut(s) 47, 363, 1094
BseNI ACTGG 5 cut(s) 184, 628, 838, 1046, 1346
BseRI GAGGAG 3 cut(s) 78, 167, 1487
BseXI GCAGC 3 cut(s) 1024, 1052, 1495
BseYI CCCAGC 1 cut(s) 1082
BsgI GTGCAG 2 cut(s) 162, 798
BshFI GGCC 2 cut(s) 428, 531
BsiHKAI GWGCWC 2 cut(s) 77, 159
BsiSI CCGG 2 cut(s) 463, 1408
BslFI GGGAC 3 cut(s) 649, 1065, 1396
BslI CCNNNNNNNGG 3 cut(s) 518, 688, 689
BsmFI GGGAC 3 cut(s) 649, 1065, 1396
BsmI GAATGC 1 cut(s) 402
BsnI GGCC 2 cut(s) 428, 531
Bsp1286I GDGCHC 2 cut(s) 77, 159
Bsp1720I GCTNAGC 1 cut(s) 755
Bsp19I CCATGG 1 cut(s) 99
BspACI CCGC 3 cut(s) 478, 1291, 1381
BspANI GGCC 2 cut(s) 428, 531
BspCNI CTCAG 3 cut(s) 48, 362, 1095
BspHI TCATGA 1 cut(s) 1434
BspLI GGNNCC 5 cut(s) 637, 943, 1081, 1412, 1541
BspMAI CTGCAG 1 cut(s) 1042
BspPI GGATC 7 cut(s) 46, 936, 949, 957, 1249, 1534, 1547
BspQI GCTCTTC 1 cut(s) 164
BsrDI GCAATG 2 cut(s) 210, 310
BsrFI RCCGGY 1 cut(s) 462
BsrI ACTGG 5 cut(s) 184, 628, 838, 1046, 1346
BssAI RCCGGY 1 cut(s) 462
BssECI CCNNGG 3 cut(s) 99, 808, 945
BssNI GRCGYC 1 cut(s) 678
BssT1I CCWWGG 1 cut(s) 99
Bst2UI CCWGG 4 cut(s) 430, 764, 810, 947
Bst4CI ACNGT 1 cut(s) 440
Bst6I CTCTTC 4 cut(s) 39, 164, 476, 1521
BstACI GRCGYC 1 cut(s) 678
BstC8I GCNNGC 4 cut(s) 170, 402, 533, 725
BstDEI CTNAG 5 cut(s) 56, 349, 423, 755, 1103
BstDSI CCRYGG 1 cut(s) 99
BstF5I GGATG 6 cut(s) 532, 650, 659, 665, 790, 1282
BstH2I RGCGCY 1 cut(s) 1519
BstHHI GCGC 2 cut(s) 747, 1518
BstMWI GCNNNNNNNGC 3 cut(s) 751, 1462, 1483
BstNI CCWGG 4 cut(s) 430, 764, 810, 947
BstNSI RCATGY 3 cut(s) 278, 727, 1074
BstSCI CCNGG 4 cut(s) 428, 762, 808, 945
BstSFI CTRYAG 2 cut(s) 28, 1038
BstV1I GCAGC 3 cut(s) 1024, 1052, 1495
BstX2I RGATCY 5 cut(s) 59, 941, 949, 1241, 1539
BstXI CCANNNNNNTGG 1 cut(s) 278
BstYI RGATCY 5 cut(s) 59, 941, 949, 1241, 1539
BsuI GTATCC 1 cut(s) 904
BsuRI GGCC 2 cut(s) 428, 531
BtgI CCRYGG 1 cut(s) 99
BtsCI GGATG 6 cut(s) 532, 650, 659, 665, 790, 1282
BtsIMutI CAGTG 2 cut(s) 831, 1121
Cac8I GCNNGC 4 cut(s) 170, 402, 533, 725
CciI TCATGA 1 cut(s) 1434
CfoI GCGC 2 cut(s) 747, 1518
Cfr10I RCCGGY 1 cut(s) 462
Cfr13I GGNCC 4 cut(s) 465, 636, 1079, 1410
CseI GACGC 1 cut(s) 686
CsiI ACCWGGT 1 cut(s) 762
Csp6I GTAC 1 cut(s) 735
CviAII CATG 8 cut(s) 100, 275, 334, 451, 697, 724, 1071, 1435
CviQI GTAC 1 cut(s) 735
DdeI CTNAG 5 cut(s) 56, 349, 423, 755, 1103
DraIII CACNNNGTG 1 cut(s) 1025
Eam1104I CTCTTC 4 cut(s) 39, 164, 476, 1521
EarI CTCTTC 4 cut(s) 39, 164, 476, 1521
Ecl136II GAGCTC 2 cut(s) 75, 157
Eco130I CCWWGG 1 cut(s) 99
Eco147I AGGCCT 1 cut(s) 428
Eco24I GRGCYC 2 cut(s) 77, 159
Eco32I GATATC 1 cut(s) 240
Eco47I GGWCC 4 cut(s) 465, 636, 1079, 1410
Eco53kI GAGCTC 2 cut(s) 75, 157
Eco57I CTGAAG 4 cut(s) 528, 957, 1245, 1463
EcoICRI GAGCTC 2 cut(s) 75, 157
EcoO109I RGGNCCY 1 cut(s) 636
EcoRI GAATTC 1 cut(s) 1003
EcoRII CCWGG 4 cut(s) 428, 762, 808, 945
EcoRV GATATC 1 cut(s) 240
EcoT14I CCWWGG 1 cut(s) 99
EcoT22I ATGCAT 1 cut(s) 1072
EcoT38I GRGCYC 2 cut(s) 77, 159
ErhI CCWWGG 1 cut(s) 99
FaeI CATG 8 cut(s) 103, 278, 337, 454, 700, 727, 1074, 1438
FaqI GGGAC 3 cut(s) 649, 1065, 1396
FatI CATG 8 cut(s) 99, 274, 333, 450, 696, 723, 1070, 1434
FauNDI CATATG 2 cut(s) 1109, 1504
FbaI TGATCA 2 cut(s) 841, 1207
FblI GTMKAC 1 cut(s) 283
Fnu4HI GCNGC 3 cut(s) 1038, 1041, 1484
FokI GGATG 6 cut(s) 539, 637, 646, 652, 797, 1289
FriOI GRGCYC 2 cut(s) 77, 159
Fsp4HI GCNGC 3 cut(s) 1038, 1041, 1484
FspBI CTAG 5 cut(s) 39, 255, 405, 798, 1161
GlaI GCGC 2 cut(s) 746, 1517
GluI GCNGC 3 cut(s) 1038, 1041, 1484
GsaI CCCAGC 1 cut(s) 1086
GsuI CTGGAG 2 cut(s) 201, 1329
HaeII RGCGCY 1 cut(s) 1519
HaeIII GGCC 2 cut(s) 428, 531
HapII CCGG 2 cut(s) 463, 1408
HgaI GACGC 1 cut(s) 686
HhaI GCGC 2 cut(s) 747, 1518
Hin1I GRCGYC 1 cut(s) 678
Hin1II CATG 8 cut(s) 103, 278, 337, 454, 700, 727, 1074, 1438
Hin6I GCGC 2 cut(s) 745, 1516
HinP1I GCGC 2 cut(s) 745, 1516
HincII GTYRAC 1 cut(s) 829
HindII GTYRAC 1 cut(s) 829
HindIII AAGCTT 1 cut(s) 752
HinfI GANTC 2 cut(s) 1028, 1448
HpaII CCGG 2 cut(s) 463, 1408
HphI GGTGA 3 cut(s) 260, 704, 886
Hpy166II GTNNAC 3 cut(s) 284, 829, 1121
Hpy188I TCNGA 7 cut(s) 22, 472, 1104, 1150, 1178, 1360, 1453
Hpy8I GTNNAC 3 cut(s) 284, 829, 1121
Hpy99I CGWCG 1 cut(s) 680
HpyAV CCTTC 7 cut(s) 3, 649, 932, 956, 1026, 1438, 1441
HpyCH4III ACNGT 1 cut(s) 440
HpyCH4IV ACGT 2 cut(s) 1183, 1225
HpyF10VI GCNNNNNNNGC 3 cut(s) 751, 1462, 1483
HpyF3I CTNAG 5 cut(s) 56, 349, 423, 755, 1103
HpySE526I ACGT 2 cut(s) 1183, 1225
Hsp92I GRCGYC 1 cut(s) 678
Hsp92II CATG 8 cut(s) 103, 278, 337, 454, 700, 727, 1074, 1438
HspAI GCGC 2 cut(s) 745, 1516
Ksp22I TGATCA 2 cut(s) 841, 1207
LguI GCTCTTC 1 cut(s) 164
LmnI GCTCC 4 cut(s) 154, 797, 1474, 1513
Lsp1109I GCAGC 3 cut(s) 1024, 1052, 1495
LweI GCATC 3 cut(s) 96, 1057, 1267
MabI ACCWGGT 1 cut(s) 762
MaeI CTAG 5 cut(s) 39, 255, 405, 798, 1161
MaeII ACGT 2 cut(s) 1183, 1225
MaeIII GTNAC 5 cut(s) 126, 407, 692, 914, 1246
MboII GAAGA 6 cut(s) 56, 151, 493, 584, 1505, 1538
MflI RGATCY 5 cut(s) 59, 941, 949, 1241, 1539
MhlI GDGCHC 2 cut(s) 77, 159
Mph1103I ATGCAT 1 cut(s) 1072
MseI TTAA 4 cut(s) 567, 597, 909, 1422
MslI CAYNNNNRTG 2 cut(s) 104, 273
MspA1I CMGCKG 1 cut(s) 353
MspI CCGG 2 cut(s) 463, 1408
MspR9I CCNGG 4 cut(s) 430, 764, 810, 947
Mva1269I GAATGC 1 cut(s) 402
MvaI CCWGG 4 cut(s) 430, 764, 810, 947
MwoI GCNNNNNNNGC 3 cut(s) 751, 1462, 1483
NcoI CCATGG 1 cut(s) 99
NdeI CATATG 2 cut(s) 1109, 1504
NlaIII CATG 8 cut(s) 103, 278, 337, 454, 700, 727, 1074, 1438
NlaIV GGNNCC 5 cut(s) 637, 943, 1081, 1412, 1541
NmuCI GTSAC 5 cut(s) 126, 407, 692, 914, 1246
NsiI ATGCAT 1 cut(s) 1072
NspI RCATGY 3 cut(s) 278, 727, 1074
PaeI GCATGC 1 cut(s) 727
PagI TCATGA 1 cut(s) 1434
PceI AGGCCT 1 cut(s) 428
PciI ACATGT 1 cut(s) 274
PciSI GCTCTTC 1 cut(s) 164
PcsI WCGNNNNNNNCGW 1 cut(s) 1231
PctI GAATGC 1 cut(s) 402
PfeI GAWTC 2 cut(s) 1028, 1448
PkrI GCNGC 3 cut(s) 1039, 1042, 1485
PpuMI RGGWCCY 1 cut(s) 636
PscI ACATGT 1 cut(s) 274
PsiI TTATAA 1 cut(s) 555
Psp124BI GAGCTC 2 cut(s) 77, 159
Psp1406I AACGTT 1 cut(s) 1225
Psp5II RGGWCCY 1 cut(s) 636
Psp6I CCWGG 4 cut(s) 428, 762, 808, 945
PspFI CCCAGC 1 cut(s) 1082
PspGI CCWGG 4 cut(s) 428, 762, 808, 945
PspN4I GGNNCC 5 cut(s) 637, 943, 1081, 1412, 1541
PspPI GGNCC 4 cut(s) 465, 636, 1079, 1410
PspPPI RGGWCCY 1 cut(s) 636
PsrI GAACNNNNNNTAC 2 cut(s) 179, 211
PstI CTGCAG 1 cut(s) 1042
PsuI RGATCY 5 cut(s) 59, 941, 949, 1241, 1539
PvuII CAGCTG 1 cut(s) 353
RsaI GTAC 1 cut(s) 736
RsaNI GTAC 1 cut(s) 735
RseI CAYNNNNRTG 2 cut(s) 104, 273
SacI GAGCTC 2 cut(s) 77, 159
SapI GCTCTTC 1 cut(s) 164
SaqAI TTAA 4 cut(s) 567, 597, 909, 1422
SatI GCNGC 3 cut(s) 1038, 1041, 1484
Sau96I GGNCC 4 cut(s) 465, 636, 1079, 1410
ScrFI CCNGG 4 cut(s) 430, 764, 810, 947
SduI GDGCHC 2 cut(s) 77, 159
SexAI ACCWGGT 1 cut(s) 762
SfaNI GCATC 3 cut(s) 96, 1057, 1267
SfcI CTRYAG 2 cut(s) 28, 1038
SinI GGWCC 4 cut(s) 465, 636, 1079, 1410
SmiMI CAYNNNNRTG 2 cut(s) 104, 273
SmlI CTYRAG 4 cut(s) 205, 953, 1008, 1090
SmoI CTYRAG 4 cut(s) 205, 953, 1008, 1090
SpeI ACTAGT 1 cut(s) 38
SphI GCATGC 1 cut(s) 727
SseBI AGGCCT 1 cut(s) 428
SsiI CCGC 3 cut(s) 478, 1291, 1381
SspMI CTAG 5 cut(s) 39, 255, 405, 798, 1161
SstI GAGCTC 2 cut(s) 77, 159
StuI AGGCCT 1 cut(s) 428
StyD4I CCNGG 4 cut(s) 428, 762, 808, 945
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 1 cut(s) 440
TaiI ACGT 2 cut(s) 1186, 1228
TaqI TCGA 4 cut(s) 220, 675, 903, 1166
TaqII GACCGA 1 cut(s) 216
TfiI GAWTC 2 cut(s) 1028, 1448
Tru1I TTAA 4 cut(s) 567, 597, 909, 1422
Tru9I TTAA 4 cut(s) 567, 597, 909, 1422
TscAI CASTG 2 cut(s) 838, 1128
TseFI GTSAC 5 cut(s) 126, 407, 692, 914, 1246
TseI GCWGC 3 cut(s) 1037, 1040, 1483
Tsp45I GTSAC 5 cut(s) 126, 407, 692, 914, 1246
TspDTI ATGAA 7 cut(s) 321, 631, 648, 1044, 1423, 1451, 1521
TspRI CASTG 2 cut(s) 838, 1128
VpaK11BI GGWCC 4 cut(s) 465, 636, 1079, 1410
XapI RAATTY 6 cut(s) 121, 133, 502, 575, 819, 1003
XbaI TCTAGA 1 cut(s) 1160
XceI RCATGY 3 cut(s) 278, 727, 1074
XmiI GTMKAC 1 cut(s) 283
XspI CTAG 5 cut(s) 39, 255, 405, 798, 1161
Zsp2I ATGCAT 1 cut(s) 1072
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.