arbuscular mycorrhizal association
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g23980 FvH4_5g23980 |
| malus_domestica | MD00G1002000.v1.1 MD06G1015600.v1.1 |
| prunus_persica | Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 |
| pyrus_communis | pycom06g01260 pycom16g25500 |
| rosa_chinensis | RchiOBHm_Chr7g0213421 |
| rosa_laevigata | RLG00000002805 |
| rosa_multiflora | Rmu_sc0003740.1_g000017 Rmu_sc0013012.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00245920 |
| rosa_rugosa | Rorug07G0142100 Rorug07G0142200 |
| rosa_samantha | Rh7AG274100 Rh7BG269400 Rh7CG293200 Rh7DG281600 |
| rosa_wichuraiana | Rw7G023770 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 732 |
| AccI | GTMKAC | 1 cut(s) | 334 |
| AciI | CCGC | 2 cut(s) | 534, 1369 |
| AclI | AACGTT | 1 cut(s) | 1303 |
| AclWI | GGATC | 6 cut(s) | 46, 978, 993, 1006, 1014, 1327 |
| AcoI | YGGCCR | 1 cut(s) | 1332 |
| AcsI | RAATTY | 5 cut(s) | 121, 133, 679, 752, 1060 |
| AcuI | CTGAAG | 4 cut(s) | 705, 1014, 1323, 1541 |
| AdeI | CACNNNGTG | 1 cut(s) | 1082 |
| AfaI | GTAC | 1 cut(s) | 794 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 695, 789, 1238 |
| AhlI | ACTAGT | 1 cut(s) | 38 |
| AjnI | CCWGG | 3 cut(s) | 483, 865, 1002 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1251, 1283 |
| Alw21I | GWGCWC | 1 cut(s) | 77 |
| Alw26I | GTCTC | 1 cut(s) | 582 |
| AlwI | GGATC | 6 cut(s) | 46, 978, 993, 1006, 1014, 1327 |
| AoxI | GGCC | 3 cut(s) | 481, 706, 1332 |
| ApeKI | GCWGC | 4 cut(s) | 206, 1094, 1097, 1561 |
| ApoI | RAATTY | 5 cut(s) | 121, 133, 679, 752, 1060 |
| AspLEI | GCGC | 2 cut(s) | 805, 1596 |
| AspS9I | GGNCC | 3 cut(s) | 521, 1136, 1488 |
| AsuHPI | GGTGA | 2 cut(s) | 311, 943 |
| AvaII | GGWCC | 3 cut(s) | 521, 1136, 1488 |
| BamHI | GGATCC | 1 cut(s) | 998 |
| BanII | GRGCYC | 1 cut(s) | 77 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 222, 254 |
| Bbv12I | GWGCWC | 1 cut(s) | 77 |
| BbvI | GCAGC | 4 cut(s) | 193, 1081, 1109, 1573 |
| BccI | CCATC | 4 cut(s) | 698, 1009, 1127, 1441 |
| BciT130I | CCWGG | 3 cut(s) | 485, 867, 1004 |
| BciVI | GTATCC | 1 cut(s) | 961 |
| BclI | TGATCA | 3 cut(s) | 145, 898, 1285 |
| BcoDI | GTCTC | 1 cut(s) | 582 |
| BcuI | ACTAGT | 1 cut(s) | 38 |
| BfaI | CTAG | 6 cut(s) | 39, 306, 456, 855, 1187, 1218 |
| BfmI | CTRYAG | 3 cut(s) | 28, 1095, 1245 |
| BfoI | RGCGCY | 1 cut(s) | 1597 |
| BfuI | GTATCC | 1 cut(s) | 961 |
| BglII | AGATCT | 1 cut(s) | 59 |
| BisI | GCNGC | 4 cut(s) | 207, 1095, 1098, 1562 |
| BlpI | GCTNAGC | 1 cut(s) | 812 |
| BlsI | GCNGC | 4 cut(s) | 208, 1096, 1099, 1563 |
| Bme1390I | CCNGG | 3 cut(s) | 485, 867, 1004 |
| Bme18I | GGWCC | 3 cut(s) | 521, 1136, 1488 |
| BmgT120I | GGNCC | 3 cut(s) | 521, 1136, 1488 |
| BmiI | GGNNCC | 3 cut(s) | 1000, 1138, 1490 |
| BmrFI | CCNGG | 3 cut(s) | 485, 867, 1004 |
| BmsI | GCATC | 3 cut(s) | 96, 1114, 1345 |
| BpmI | CTGGAG | 1 cut(s) | 1407 |
| Bpu10I | CCTNAGC | 1 cut(s) | 474 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 812 |
| BpuEI | CTTGAG | 4 cut(s) | 237, 1031, 1050, 1132 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1318 |
| BsaJI | CCNNGG | 3 cut(s) | 99, 865, 1002 |
| BsaWI | WCCGGW | 1 cut(s) | 1485 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 695, 789, 1238 |
| Bse118I | RCCGGY | 1 cut(s) | 518 |
| Bse1I | ACTGG | 3 cut(s) | 895, 1103, 1424 |
| Bse3DI | GCAATG | 2 cut(s) | 257, 361 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1318 |
| BseBI | CCWGG | 3 cut(s) | 485, 867, 1004 |
| BseDI | CCNNGG | 3 cut(s) | 99, 865, 1002 |
| BseGI | GGATG | 4 cut(s) | 625, 709, 847, 1360 |
| BseJI | GATNNNNATC | 1 cut(s) | 1318 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 695, 789, 1238 |
| BseMI | GCAATG | 2 cut(s) | 257, 361 |
| BseMII | CTCAG | 6 cut(s) | 47, 215, 414, 645, 1151, 1521 |
| BseNI | ACTGG | 3 cut(s) | 895, 1103, 1424 |
| BseRI | GAGGAG | 2 cut(s) | 78, 1565 |
| BseXI | GCAGC | 4 cut(s) | 193, 1081, 1109, 1573 |
| BseYI | CCCAGC | 1 cut(s) | 1139 |
| BsgI | GTGCAG | 1 cut(s) | 855 |
| BshFI | GGCC | 3 cut(s) | 483, 708, 1334 |
| BsiHKAI | GWGCWC | 1 cut(s) | 77 |
| BsiSI | CCGG | 2 cut(s) | 519, 1486 |
| BslFI | GGGAC | 3 cut(s) | 1122, 1214, 1474 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 695, 789, 1238 |
| BsmAI | GTCTC | 1 cut(s) | 582 |
| BsmFI | GGGAC | 3 cut(s) | 1122, 1214, 1474 |
| BsmI | GAATGC | 2 cut(s) | 195, 453 |
| BsnI | GGCC | 3 cut(s) | 483, 708, 1334 |
| Bsp1286I | GDGCHC | 1 cut(s) | 77 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 812 |
| Bsp19I | CCATGG | 1 cut(s) | 99 |
| BspACI | CCGC | 2 cut(s) | 534, 1369 |
| BspANI | GGCC | 3 cut(s) | 483, 708, 1334 |
| BspCNI | CTCAG | 6 cut(s) | 48, 216, 413, 644, 1152, 1522 |
| BspHI | TCATGA | 3 cut(s) | 654, 973, 1512 |
| BspLI | GGNNCC | 3 cut(s) | 1000, 1138, 1490 |
| BspMAI | CTGCAG | 2 cut(s) | 1099, 1249 |
| BspPI | GGATC | 6 cut(s) | 46, 978, 993, 1006, 1014, 1327 |
| BsrDI | GCAATG | 2 cut(s) | 257, 361 |
| BsrFI | RCCGGY | 1 cut(s) | 518 |
| BsrI | ACTGG | 3 cut(s) | 895, 1103, 1424 |
| BssAI | RCCGGY | 1 cut(s) | 518 |
| BssECI | CCNNGG | 3 cut(s) | 99, 865, 1002 |
| BssT1I | CCWWGG | 1 cut(s) | 99 |
| Bst2UI | CCWGG | 3 cut(s) | 485, 867, 1004 |
| Bst4CI | ACNGT | 3 cut(s) | 428, 495, 611 |
| Bst6I | CTCTTC | 3 cut(s) | 39, 653, 1600 |
| BstC8I | GCNNGC | 1 cut(s) | 453 |
| BstDEI | CTNAG | 8 cut(s) | 56, 224, 400, 474, 631, 812, 1160, 1530 |
| BstDSI | CCRYGG | 1 cut(s) | 99 |
| BstF5I | GGATG | 4 cut(s) | 625, 709, 847, 1360 |
| BstH2I | RGCGCY | 1 cut(s) | 1597 |
| BstHHI | GCGC | 2 cut(s) | 805, 1596 |
| BstMAI | GTCTC | 1 cut(s) | 582 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1540, 1561 |
| BstNI | CCWGG | 3 cut(s) | 485, 867, 1004 |
| BstNSI | RCATGY | 2 cut(s) | 329, 1131 |
| BstSCI | CCNGG | 3 cut(s) | 483, 865, 1002 |
| BstSFI | CTRYAG | 3 cut(s) | 28, 1095, 1245 |
| BstV1I | GCAGC | 4 cut(s) | 193, 1081, 1109, 1573 |
| BstX2I | RGATCY | 4 cut(s) | 59, 998, 1006, 1319 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 329 |
| BstYI | RGATCY | 4 cut(s) | 59, 998, 1006, 1319 |
| BsuI | GTATCC | 1 cut(s) | 961 |
| BsuRI | GGCC | 3 cut(s) | 483, 708, 1334 |
| BtgI | CCRYGG | 1 cut(s) | 99 |
| BtsCI | GGATG | 4 cut(s) | 625, 709, 847, 1360 |
| BtsIMutI | CAGTG | 2 cut(s) | 888, 1178 |
| Cac8I | GCNNGC | 1 cut(s) | 453 |
| CciI | TCATGA | 3 cut(s) | 654, 973, 1512 |
| CfoI | GCGC | 2 cut(s) | 805, 1596 |
| Cfr10I | RCCGGY | 1 cut(s) | 518 |
| Cfr13I | GGNCC | 3 cut(s) | 521, 1136, 1488 |
| Csp6I | GTAC | 1 cut(s) | 793 |
| CviAII | CATG | 9 cut(s) | 100, 326, 385, 506, 655, 974, 1128, 1238, 1513 |
| CviQI | GTAC | 1 cut(s) | 793 |
| DdeI | CTNAG | 8 cut(s) | 56, 224, 400, 474, 631, 812, 1160, 1530 |
| DraIII | CACNNNGTG | 1 cut(s) | 1082 |
| EaeI | YGGCCR | 1 cut(s) | 1332 |
| Eam1104I | CTCTTC | 3 cut(s) | 39, 653, 1600 |
| EarI | CTCTTC | 3 cut(s) | 39, 653, 1600 |
| Ecl136II | GAGCTC | 1 cut(s) | 75 |
| Eco130I | CCWWGG | 1 cut(s) | 99 |
| Eco147I | AGGCCT | 1 cut(s) | 483 |
| Eco24I | GRGCYC | 1 cut(s) | 77 |
| Eco32I | GATATC | 2 cut(s) | 291, 1252 |
| Eco47I | GGWCC | 3 cut(s) | 521, 1136, 1488 |
| Eco53kI | GAGCTC | 1 cut(s) | 75 |
| Eco57I | CTGAAG | 4 cut(s) | 705, 1014, 1323, 1541 |
| EcoICRI | GAGCTC | 1 cut(s) | 75 |
| EcoRI | GAATTC | 1 cut(s) | 1060 |
| EcoRII | CCWGG | 3 cut(s) | 483, 865, 1002 |
| EcoRV | GATATC | 2 cut(s) | 291, 1252 |
| EcoT14I | CCWWGG | 1 cut(s) | 99 |
| EcoT22I | ATGCAT | 1 cut(s) | 1129 |
| EcoT38I | GRGCYC | 1 cut(s) | 77 |
| ErhI | CCWWGG | 1 cut(s) | 99 |
| FaeI | CATG | 9 cut(s) | 103, 329, 388, 509, 658, 977, 1131, 1241, 1516 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1581, 1613 |
| FaqI | GGGAC | 3 cut(s) | 1122, 1214, 1474 |
| FatI | CATG | 9 cut(s) | 99, 325, 384, 505, 654, 973, 1127, 1237, 1512 |
| FauNDI | CATATG | 1 cut(s) | 1166 |
| FbaI | TGATCA | 3 cut(s) | 145, 898, 1285 |
| FblI | GTMKAC | 1 cut(s) | 334 |
| Fnu4HI | GCNGC | 4 cut(s) | 207, 1095, 1098, 1562 |
| FokI | GGATG | 4 cut(s) | 612, 716, 854, 1367 |
| FriOI | GRGCYC | 1 cut(s) | 77 |
| Fsp4HI | GCNGC | 4 cut(s) | 207, 1095, 1098, 1562 |
| FspBI | CTAG | 6 cut(s) | 39, 306, 456, 855, 1187, 1218 |
| GlaI | GCGC | 2 cut(s) | 804, 1595 |
| GluI | GCNGC | 4 cut(s) | 207, 1095, 1098, 1562 |
| GsaI | CCCAGC | 1 cut(s) | 1143 |
| GsuI | CTGGAG | 1 cut(s) | 1407 |
| HaeII | RGCGCY | 1 cut(s) | 1597 |
| HaeIII | GGCC | 3 cut(s) | 483, 708, 1334 |
| HapII | CCGG | 2 cut(s) | 519, 1486 |
| HhaI | GCGC | 2 cut(s) | 805, 1596 |
| Hin1II | CATG | 9 cut(s) | 103, 329, 388, 509, 658, 977, 1131, 1241, 1516 |
| Hin6I | GCGC | 2 cut(s) | 803, 1594 |
| HinP1I | GCGC | 2 cut(s) | 803, 1594 |
| HincII | GTYRAC | 1 cut(s) | 886 |
| HindII | GTYRAC | 1 cut(s) | 886 |
| HindIII | AAGCTT | 1 cut(s) | 809 |
| HinfI | GANTC | 3 cut(s) | 601, 1085, 1526 |
| HpaII | CCGG | 2 cut(s) | 519, 1486 |
| HphI | GGTGA | 2 cut(s) | 311, 943 |
| Hpy166II | GTNNAC | 3 cut(s) | 335, 886, 1178 |
| Hpy188I | TCNGA | 8 cut(s) | 22, 225, 528, 1161, 1207, 1256, 1438, 1531 |
| Hpy8I | GTNNAC | 3 cut(s) | 335, 886, 1178 |
| HpyAV | CCTTC | 9 cut(s) | 3, 632, 719, 989, 1013, 1083, 1242, 1516, 1519 |
| HpyCH4III | ACNGT | 3 cut(s) | 428, 495, 611 |
| HpyCH4IV | ACGT | 2 cut(s) | 1261, 1303 |
| HpyCH4V | TGCA | 9 cut(s) | 262, 451, 676, 758, 836, 985, 1097, 1127, 1247 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1540, 1561 |
| HpyF3I | CTNAG | 8 cut(s) | 56, 224, 400, 474, 631, 812, 1160, 1530 |
| HpySE526I | ACGT | 2 cut(s) | 1261, 1303 |
| Hsp92II | CATG | 9 cut(s) | 103, 329, 388, 509, 658, 977, 1131, 1241, 1516 |
| HspAI | GCGC | 2 cut(s) | 803, 1594 |
| Ksp22I | TGATCA | 3 cut(s) | 145, 898, 1285 |
| LmnI | GCTCC | 2 cut(s) | 854, 1552 |
| Lsp1109I | GCAGC | 4 cut(s) | 193, 1081, 1109, 1573 |
| LweI | GCATC | 3 cut(s) | 96, 1114, 1345 |
| MaeI | CTAG | 6 cut(s) | 39, 306, 456, 855, 1187, 1218 |
| MaeII | ACGT | 2 cut(s) | 1261, 1303 |
| MaeIII | GTNAC | 3 cut(s) | 126, 458, 1324 |
| MboII | GAAGA | 6 cut(s) | 56, 159, 242, 670, 761, 1583 |
| MfeI | CAATTG | 1 cut(s) | 559 |
| MflI | RGATCY | 4 cut(s) | 59, 998, 1006, 1319 |
| MhlI | GDGCHC | 1 cut(s) | 77 |
| MlyI | GAGTC | 1 cut(s) | 595 |
| Mph1103I | ATGCAT | 1 cut(s) | 1129 |
| MseI | TTAA | 6 cut(s) | 555, 774, 966, 1454, 1500, 1577 |
| MslI | CAYNNNNRTG | 2 cut(s) | 104, 324 |
| MspA1I | CMGCKG | 1 cut(s) | 404 |
| MspI | CCGG | 2 cut(s) | 519, 1486 |
| MspR9I | CCNGG | 3 cut(s) | 485, 867, 1004 |
| MunI | CAATTG | 1 cut(s) | 559 |
| Mva1269I | GAATGC | 2 cut(s) | 195, 453 |
| MvaI | CCWGG | 3 cut(s) | 485, 867, 1004 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1540, 1561 |
| NcoI | CCATGG | 1 cut(s) | 99 |
| NdeI | CATATG | 1 cut(s) | 1166 |
| NlaIII | CATG | 9 cut(s) | 103, 329, 388, 509, 658, 977, 1131, 1241, 1516 |
| NlaIV | GGNNCC | 3 cut(s) | 1000, 1138, 1490 |
| NmuCI | GTSAC | 3 cut(s) | 126, 458, 1324 |
| NsiI | ATGCAT | 1 cut(s) | 1129 |
| NspI | RCATGY | 2 cut(s) | 329, 1131 |
| PagI | TCATGA | 3 cut(s) | 654, 973, 1512 |
| PceI | AGGCCT | 1 cut(s) | 483 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1309 |
| PctI | GAATGC | 2 cut(s) | 195, 453 |
| PfeI | GAWTC | 2 cut(s) | 1085, 1526 |
| PkrI | GCNGC | 4 cut(s) | 208, 1096, 1099, 1563 |
| PleI | GAGTC | 1 cut(s) | 595 |
| PpsI | GAGTC | 1 cut(s) | 595 |
| PsiI | TTATAA | 1 cut(s) | 732 |
| Psp124BI | GAGCTC | 1 cut(s) | 77 |
| Psp1406I | AACGTT | 1 cut(s) | 1303 |
| Psp6I | CCWGG | 3 cut(s) | 483, 865, 1002 |
| PspFI | CCCAGC | 1 cut(s) | 1139 |
| PspGI | CCWGG | 3 cut(s) | 483, 865, 1002 |
| PspN4I | GGNNCC | 3 cut(s) | 1000, 1138, 1490 |
| PspPI | GGNCC | 3 cut(s) | 521, 1136, 1488 |
| PstI | CTGCAG | 2 cut(s) | 1099, 1249 |
| PsuI | RGATCY | 4 cut(s) | 59, 998, 1006, 1319 |
| PvuII | CAGCTG | 1 cut(s) | 404 |
| RsaI | GTAC | 1 cut(s) | 794 |
| RsaNI | GTAC | 1 cut(s) | 793 |
| RseI | CAYNNNNRTG | 2 cut(s) | 104, 324 |
| SacI | GAGCTC | 1 cut(s) | 77 |
| SaqAI | TTAA | 6 cut(s) | 555, 774, 966, 1454, 1500, 1577 |
| SatI | GCNGC | 4 cut(s) | 207, 1095, 1098, 1562 |
| Sau96I | GGNCC | 3 cut(s) | 521, 1136, 1488 |
| SchI | GAGTC | 1 cut(s) | 595 |
| ScrFI | CCNGG | 3 cut(s) | 485, 867, 1004 |
| SduI | GDGCHC | 1 cut(s) | 77 |
| SfaNI | GCATC | 3 cut(s) | 96, 1114, 1345 |
| SfcI | CTRYAG | 3 cut(s) | 28, 1095, 1245 |
| SinI | GGWCC | 3 cut(s) | 521, 1136, 1488 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 104, 324 |
| SmlI | CTYRAG | 4 cut(s) | 252, 1010, 1065, 1147 |
| SmoI | CTYRAG | 4 cut(s) | 252, 1010, 1065, 1147 |
| SpeI | ACTAGT | 1 cut(s) | 38 |
| SseBI | AGGCCT | 1 cut(s) | 483 |
| SsiI | CCGC | 2 cut(s) | 534, 1369 |
| SspMI | CTAG | 6 cut(s) | 39, 306, 456, 855, 1187, 1218 |
| SstI | GAGCTC | 1 cut(s) | 77 |
| StuI | AGGCCT | 1 cut(s) | 483 |
| StyD4I | CCNGG | 3 cut(s) | 483, 865, 1002 |
| StyI | CCWWGG | 1 cut(s) | 99 |
| TaaI | ACNGT | 3 cut(s) | 428, 495, 611 |
| TaiI | ACGT | 2 cut(s) | 1264, 1306 |
| TaqI | TCGA | 2 cut(s) | 267, 1223 |
| TaqII | GACCGA | 1 cut(s) | 263 |
| TfiI | GAWTC | 2 cut(s) | 1085, 1526 |
| Tru1I | TTAA | 6 cut(s) | 555, 774, 966, 1454, 1500, 1577 |
| Tru9I | TTAA | 6 cut(s) | 555, 774, 966, 1454, 1500, 1577 |
| TscAI | CASTG | 2 cut(s) | 895, 1185 |
| TseFI | GTSAC | 3 cut(s) | 126, 458, 1324 |
| TseI | GCWGC | 4 cut(s) | 206, 1094, 1097, 1561 |
| Tsp45I | GTSAC | 3 cut(s) | 126, 458, 1324 |
| TspDTI | ATGAA | 9 cut(s) | 128, 198, 372, 614, 671, 1101, 1501, 1529, 1599 |
| TspRI | CASTG | 2 cut(s) | 895, 1185 |
| VpaK11BI | GGWCC | 3 cut(s) | 521, 1136, 1488 |
| XapI | RAATTY | 5 cut(s) | 121, 133, 679, 752, 1060 |
| XbaI | TCTAGA | 1 cut(s) | 1217 |
| XceI | RCATGY | 2 cut(s) | 329, 1131 |
| XmiI | GTMKAC | 1 cut(s) | 334 |
| XspI | CTAG | 6 cut(s) | 39, 306, 456, 855, 1187, 1218 |
| Zsp2I | ATGCAT | 1 cut(s) | 1129 |