Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0006933

Physical Location & Seq

Genomic Coordinates Forward (+)

1314950 .. 1316859

Gene Structure 1910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g01260.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGTCAATGAAGGGATTAAGGGAAGCTCAGTGAATGATTCTCCTGTGAAACCAGAAAGCAGTCGGCAGAAGTTGATAAACACATTGGCGATTCCAAGAAGTGAGGGGCAGGAGATGGAAGGAAGAAGGCTTTCGGACTTCTATAGGAATACAAGTGAGGAGTTGAGCCTGAGATCTTATATGGAGAGCCCAGTTGCAATGCCTCTACCAACCATGGAGATGCTTGGTTTTAAGAATTTGTCTCAAAACTTTCGTACTGATAGCGAGGAACTCTTCAAAAGCTGGCTCACAAATGGAGAGACCAATTGCTATAATTCGTCAAGCATTGCACATCGTACCCGATCACGGATGATTTCTACTGAAATAGCTAGCTTGCCGGGTCAGCAACATGTCGGTATACTTCAAAAGAAAAGAAGCAATGATTGCATGGTGTTGAACGAGGAATACAAGCTAGCGAGTTATACTTGGCTAAGGCATGTTAATATTGATTCCTTTCAGGATTCATTTCAAGGAAGCTTCATCTTGTATGTATCTGATATTTTCCTATCAATGCAGGCCTGGTTTCACAGTTCTCAACCAATGACAAGAAGCCGATCCTCTGAATTGCGGAGGAGGTATGTCGCTATGCAAAACGCTCAAATGCCAGCAGGTCTGGAAGTCATGCAGACTGCTTCAGGGAATAGCAATCTAGCAAATCAGGATTTTGCGTTTTCAAATGGTTTCAATGACCCTCCTATTTGTGAGGTCAGCAACCAATTGGCGACCTTCATTTCTCCATCCAATTCATCATCGTCCACTTTCAACACCCCACTAATGAGTGAAATGGATAAAGTTTCATCTGTGGTGAACATGCTAAAGGGTACCTTGGAGCGCAAAAAGCTTAGCAATCAGATCGAGAAACAAAGTGTGGATGATGATAGATCCAATGGACGTTTCTCTGTTCAAGAAGTTATTTTCAACACCGGTTTTGATCAAGGGGAAAGGGATCAACTTCATGATATGGCAGCTGGAACATTTCAGGAAGTATCCACTATCCAATTTAACGGTCATAGAATTACACAAAACGTTGAAGGTTCACTGGATCGTTCAGATGGAAGGTTTTGTAAATATCACAAACCCAAATCCCGTAAGCAGGACTTCTCAAGAACGTTCCCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0036377 GO:0044403 GO:0044419 GO:0051704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

387

Amino Acids

43.8

Weight (kDa)

7.06

Isoelectric Point (pI)

58.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006933)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23980 FvH4_5g23980
malus_domestica	MD00G1002000.v1.1 MD06G1015600.v1.1
prunus_persica	Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1 Prupe.5G020000_v2.0.a1
pyrus_communis	pycom06g01260 pycom16g25500
rosa_chinensis	RchiOBHm_Chr7g0213421
rosa_laevigata	RLG00000002805
rosa_multiflora	Rmu_sc0003740.1_g000017 Rmu_sc0013012.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245920
rosa_rugosa	Rorug07G0142100 Rorug07G0142200
rosa_samantha	Rh7AG274100 Rh7BG269400 Rh7CG293200 Rh7DG281600
rosa_wichuraiana	Rw7G023770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	638
Acc65I	GGTACC	1 cut(s)	860
AccB1I	GGYRCC	1 cut(s)	860
AccI	GTMKAC	1 cut(s)	397
AciI	CCGC	1 cut(s)	607
AclI	AACGTT	2 cut(s)	1065, 1148
AclWI	GGATC	4 cut(s)	588, 915, 993, 1089
AcsI	RAATTY	1 cut(s)	235
AcuI	CTGAAG	1 cut(s)	657
AfaI	GTAC	3 cut(s)	256, 337, 862
AfiI	CCNNNNNNNGG	2 cut(s)	345, 1132
AflIII	ACRYGT	1 cut(s)	388
AgeI	ACCGGT	1 cut(s)	962
AjnI	CCWGG	1 cut(s)	557
AjuI	GAANNNNNNNTTGG	2 cut(s)	917, 949
AluBI	AGCT	8 cut(s)	27, 282, 368, 372, 451, 516, 880, 1007
AluI	AGCT	8 cut(s)	27, 282, 368, 372, 451, 516, 880, 1007
Alw26I	GTCTC	2 cut(s)	246, 293
AlwI	GGATC	4 cut(s)	588, 915, 993, 1089
AoxI	GGCC	1 cut(s)	555
ApeKI	GCWGC	1 cut(s)	1004
ApoI	RAATTY	1 cut(s)	235
AsiGI	ACCGGT	1 cut(s)	962
Asp700I	GAANNNNTTC	1 cut(s)	130
Asp718I	GGTACC	1 cut(s)	860
AspLEI	GCGC	1 cut(s)	873
AsuC2I	CCSGG	1 cut(s)	378
AsuHPI	GGTGA	1 cut(s)	856
AsuNHI	GCTAGC	2 cut(s)	368, 451
BanI	GGYRCC	1 cut(s)	860
BanII	GRGCYC	1 cut(s)	191
BbvI	GCAGC	1 cut(s)	1016
BccI	CCATC	3 cut(s)	109, 784, 1085
BcgI	CGANNNNNNTGC	2 cut(s)	874, 908
BciT130I	CCWGG	1 cut(s)	559
BciVI	GTATCC	1 cut(s)	1036
BclI	TGATCA	1 cut(s)	970
BcnI	CCSGG	1 cut(s)	378
BcoDI	GTCTC	2 cut(s)	246, 293
BfaI	CTAG	3 cut(s)	369, 452, 689
BfmI	CTRYAG	1 cut(s)	142
BfuAI	ACCTGC	1 cut(s)	638
BfuI	GTATCC	1 cut(s)	1036
BglII	AGATCT	1 cut(s)	173
BisI	GCNGC	1 cut(s)	1005
BlpI	GCTNAGC	1 cut(s)	881
BlsI	GCNGC	1 cut(s)	1006
Bme1390I	CCNGG	2 cut(s)	378, 559
BmiI	GGNNCC	1 cut(s)	862
BmrFI	CCNGG	2 cut(s)	378, 559
BmrI	ACTGGG	1 cut(s)	185
BmsI	GCATC	1 cut(s)	210
BmtI	GCTAGC	2 cut(s)	372, 455
BmuI	ACTGGG	1 cut(s)	185
Bpu10I	CCTNAGC	1 cut(s)	470
Bpu1102I	GCTNAGC	1 cut(s)	881
BpuEI	CTTGAG	1 cut(s)	1126
BpuMI	CCSGG	1 cut(s)	378
BsaI	GGTCTC	1 cut(s)	293
BsaJI	CCNNGG	2 cut(s)	213, 864
BsaWI	WCCGGW	1 cut(s)	962
Bsc4I	CCNNNNNNNGG	2 cut(s)	345, 1132
Bse118I	RCCGGY	1 cut(s)	962
Bse1I	ACTGG	2 cut(s)	191, 1083
Bse3DI	GCAATG	3 cut(s)	204, 324, 424
BseBI	CCWGG	1 cut(s)	559
BseDI	CCNNGG	2 cut(s)	213, 864
BseGI	GGATG	3 cut(s)	354, 776, 916
BseLI	CCNNNNNNNGG	2 cut(s)	345, 1132
BseMI	GCAATG	3 cut(s)	204, 324, 424
BseMII	CTCAG	2 cut(s)	42, 161
BseNI	ACTGG	2 cut(s)	191, 1083
BseRI	GAGGAG	2 cut(s)	173, 625
BseXI	GCAGC	1 cut(s)	1016
BshFI	GGCC	1 cut(s)	557
BshNI	GGYRCC	1 cut(s)	860
BshTI	ACCGGT	1 cut(s)	962
BsiSI	CCGG	2 cut(s)	377, 963
BslI	CCNNNNNNNGG	2 cut(s)	345, 1132
BsmAI	GTCTC	2 cut(s)	246, 293
BsnI	GGCC	1 cut(s)	557
Bso31I	GGTCTC	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	191
Bsp143I	GATC	8 cut(s)	173, 341, 593, 891, 920, 970, 985, 1081
Bsp1720I	GCTNAGC	1 cut(s)	881
Bsp19I	CCATGG	1 cut(s)	213
BspACI	CCGC	1 cut(s)	607
BspANI	GGCC	1 cut(s)	557
BspCNI	CTCAG	2 cut(s)	41, 162
BspHI	TCATGA	1 cut(s)	994
BspLI	GGNNCC	1 cut(s)	862
BspMI	ACCTGC	1 cut(s)	638
BspOI	GCTAGC	2 cut(s)	372, 455
BspPI	GGATC	4 cut(s)	588, 915, 993, 1089
BspT107I	GGYRCC	1 cut(s)	860
BspTNI	GGTCTC	1 cut(s)	293
BsrDI	GCAATG	3 cut(s)	204, 324, 424
BsrFI	RCCGGY	1 cut(s)	962
BsrI	ACTGG	2 cut(s)	191, 1083
BssAI	RCCGGY	1 cut(s)	962
BssECI	CCNNGG	2 cut(s)	213, 864
BssMI	GATC	8 cut(s)	173, 341, 593, 891, 920, 970, 985, 1081
BssNAI	GTATAC	1 cut(s)	398
BssT1I	CCWWGG	2 cut(s)	213, 864
Bst1107I	GTATAC	1 cut(s)	398
Bst2UI	CCWGG	1 cut(s)	559
Bst4CI	ACNGT	2 cut(s)	569, 1046
Bst6I	CTCTTC	1 cut(s)	278
BstAPI	GCANNNNNTGC	1 cut(s)	423
BstC8I	GCNNGC	6 cut(s)	284, 370, 374, 453, 555, 645
BstDEI	CTNAG	4 cut(s)	28, 170, 470, 881
BstDSI	CCRYGG	1 cut(s)	213
BstF5I	GGATG	3 cut(s)	354, 776, 916
BstHHI	GCGC	1 cut(s)	873
BstKTI	GATC	8 cut(s)	176, 344, 596, 894, 923, 973, 988, 1084
BstMAI	GTCTC	2 cut(s)	246, 293
BstMBI	GATC	8 cut(s)	173, 341, 593, 891, 920, 970, 985, 1081
BstMWI	GCNNNNNNNGC	3 cut(s)	382, 423, 877
BstNI	CCWGG	1 cut(s)	559
BstNSI	RCATGY	3 cut(s)	392, 479, 853
BstSCI	CCNGG	2 cut(s)	376, 557
BstSFI	CTRYAG	1 cut(s)	142
BstV1I	GCAGC	1 cut(s)	1016
BstX2I	RGATCY	2 cut(s)	173, 920
BstYI	RGATCY	2 cut(s)	173, 920
BstZ17I	GTATAC	1 cut(s)	398
BsuI	GTATCC	1 cut(s)	1036
BsuRI	GGCC	1 cut(s)	557
BtgI	CCRYGG	1 cut(s)	213
BtsCI	GGATG	3 cut(s)	354, 776, 916
BtsIMutI	CAGTG	2 cut(s)	36, 1076
BveI	ACCTGC	1 cut(s)	638
Cac8I	GCNNGC	6 cut(s)	284, 370, 374, 453, 555, 645
CciI	TCATGA	1 cut(s)	994
CfoI	GCGC	1 cut(s)	873
Cfr10I	RCCGGY	1 cut(s)	962
Csp6I	GTAC	3 cut(s)	255, 336, 861
CspAI	ACCGGT	1 cut(s)	962
CviAII	CATG	7 cut(s)	214, 389, 427, 476, 661, 850, 995
CviQI	GTAC	3 cut(s)	255, 336, 861
DdeI	CTNAG	4 cut(s)	28, 170, 470, 881
DpnI	GATC	8 cut(s)	175, 343, 595, 893, 922, 972, 987, 1083
DpnII	GATC	8 cut(s)	173, 341, 593, 891, 920, 970, 985, 1081
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
Eco130I	CCWWGG	2 cut(s)	213, 864
Eco147I	AGGCCT	1 cut(s)	557
Eco24I	GRGCYC	1 cut(s)	191
Eco31I	GGTCTC	1 cut(s)	293
Eco57I	CTGAAG	1 cut(s)	657
EcoRII	CCWGG	1 cut(s)	557
EcoT14I	CCWWGG	2 cut(s)	213, 864
EcoT38I	GRGCYC	1 cut(s)	191
ErhI	CCWWGG	2 cut(s)	213, 864
FaeI	CATG	7 cut(s)	217, 392, 430, 479, 664, 853, 998
FalI	AAGNNNNNCTT	4 cut(s)	848, 880, 1121, 1153
FatI	CATG	7 cut(s)	213, 388, 426, 475, 660, 849, 994
FbaI	TGATCA	1 cut(s)	970
FblI	GTMKAC	1 cut(s)	397
Fnu4HI	GCNGC	1 cut(s)	1005
FokI	GGATG	3 cut(s)	361, 763, 923
FriOI	GRGCYC	1 cut(s)	191
Fsp4HI	GCNGC	1 cut(s)	1005
FspBI	CTAG	3 cut(s)	369, 452, 689
GlaI	GCGC	1 cut(s)	872
GluI	GCNGC	1 cut(s)	1005
HaeIII	GGCC	1 cut(s)	557
HapII	CCGG	2 cut(s)	377, 963
HhaI	GCGC	1 cut(s)	873
Hin1II	CATG	7 cut(s)	217, 392, 430, 479, 664, 853, 998
Hin6I	GCGC	1 cut(s)	871
HinP1I	GCGC	1 cut(s)	871
HindIII	AAGCTT	2 cut(s)	514, 878
HinfI	GANTC	4 cut(s)	38, 91, 488, 500
HpaII	CCGG	2 cut(s)	377, 963
HphI	GGTGA	1 cut(s)	856
Hpy166II	GTNNAC	4 cut(s)	398, 795, 847, 1076
Hpy188I	TCNGA	5 cut(s)	136, 535, 601, 891, 1090
Hpy188III	TCNNGA	8 cut(s)	497, 653, 698, 895, 944, 995, 1019, 1143
Hpy8I	GTNNAC	4 cut(s)	398, 795, 847, 1076
HpyAV	CCTTC	6 cut(s)	5, 113, 120, 775, 1064, 1089
HpyCH4III	ACNGT	2 cut(s)	569, 1046
HpyCH4IV	ACGT	3 cut(s)	931, 1065, 1148
HpyCH4V	TGCA	6 cut(s)	197, 329, 426, 553, 628, 664
HpyF10VI	GCNNNNNNNGC	3 cut(s)	382, 423, 877
HpyF3I	CTNAG	4 cut(s)	28, 170, 470, 881
HpySE526I	ACGT	3 cut(s)	931, 1065, 1148
Hsp92II	CATG	7 cut(s)	217, 392, 430, 479, 664, 853, 998
HspAI	GCGC	1 cut(s)	871
KpnI	GGTACC	1 cut(s)	864
Ksp22I	TGATCA	1 cut(s)	970
Kzo9I	GATC	8 cut(s)	173, 341, 593, 891, 920, 970, 985, 1081
LmnI	GCTCC	1 cut(s)	868
Lsp1109I	GCAGC	1 cut(s)	1016
LweI	GCATC	1 cut(s)	210
MaeI	CTAG	3 cut(s)	369, 452, 689
MaeII	ACGT	3 cut(s)	931, 1065, 1148
MalI	GATC	8 cut(s)	175, 343, 595, 893, 922, 972, 987, 1083
MboI	GATC	8 cut(s)	173, 341, 593, 891, 920, 970, 985, 1081
MboII	GAAGA	2 cut(s)	135, 265
MfeI	CAATTG	2 cut(s)	304, 755
MflI	RGATCY	2 cut(s)	173, 920
MhlI	GDGCHC	1 cut(s)	191
MluCI	AATT	8 cut(s)	235, 304, 313, 602, 755, 781, 1037, 1053
MroXI	GAANNNNTTC	1 cut(s)	130
MseI	TTAA	4 cut(s)	18, 231, 480, 1041
MslI	CAYNNNNRTG	1 cut(s)	218
MspA1I	CMGCKG	1 cut(s)	1007
MspI	CCGG	2 cut(s)	377, 963
MspR9I	CCNGG	2 cut(s)	378, 559
MunI	CAATTG	2 cut(s)	304, 755
MvaI	CCWGG	1 cut(s)	559
MwoI	GCNNNNNNNGC	3 cut(s)	382, 423, 877
NciI	CCSGG	1 cut(s)	378
NcoI	CCATGG	1 cut(s)	213
NdeII	GATC	8 cut(s)	173, 341, 593, 891, 920, 970, 985, 1081
NheI	GCTAGC	2 cut(s)	368, 451
NlaIII	CATG	7 cut(s)	217, 392, 430, 479, 664, 853, 998
NlaIV	GGNNCC	1 cut(s)	862
NspI	RCATGY	3 cut(s)	392, 479, 853
PagI	TCATGA	1 cut(s)	994
PceI	AGGCCT	1 cut(s)	557
PciI	ACATGT	1 cut(s)	388
PdmI	GAANNNNTTC	1 cut(s)	130
PfeI	GAWTC	4 cut(s)	38, 91, 488, 500
PinAI	ACCGGT	1 cut(s)	962
PkrI	GCNGC	1 cut(s)	1006
PscI	ACATGT	1 cut(s)	388
Psp1406I	AACGTT	2 cut(s)	1065, 1148
Psp6I	CCWGG	1 cut(s)	557
PspGI	CCWGG	1 cut(s)	557
PspN4I	GGNNCC	1 cut(s)	862
PsrI	GAACNNNNNNTAC	2 cut(s)	428, 460
PsuI	RGATCY	2 cut(s)	173, 920
PvuII	CAGCTG	1 cut(s)	1007
RsaI	GTAC	3 cut(s)	256, 337, 862
RsaNI	GTAC	3 cut(s)	255, 336, 861
RseI	CAYNNNNRTG	1 cut(s)	218
SaqAI	TTAA	4 cut(s)	18, 231, 480, 1041
SatI	GCNGC	1 cut(s)	1005
Sau3AI	GATC	8 cut(s)	173, 341, 593, 891, 920, 970, 985, 1081
ScrFI	CCNGG	2 cut(s)	378, 559
SduI	GDGCHC	1 cut(s)	191
SfaNI	GCATC	1 cut(s)	210
SfcI	CTRYAG	1 cut(s)	142
SmiMI	CAYNNNNRTG	1 cut(s)	218
SmlI	CTYRAG	1 cut(s)	1141
SmoI	CTYRAG	1 cut(s)	1141
Sse9I	AATT	8 cut(s)	235, 304, 313, 602, 755, 781, 1037, 1053
SseBI	AGGCCT	1 cut(s)	557
SsiI	CCGC	1 cut(s)	607
SspI	AATATT	1 cut(s)	484
SspMI	CTAG	3 cut(s)	369, 452, 689
StuI	AGGCCT	1 cut(s)	557
StyD4I	CCNGG	2 cut(s)	376, 557
StyI	CCWWGG	2 cut(s)	213, 864
TaaI	ACNGT	2 cut(s)	569, 1046
TaiI	ACGT	3 cut(s)	934, 1068, 1151
TaqI	TCGA	1 cut(s)	894
TasI	AATT	8 cut(s)	235, 304, 313, 602, 755, 781, 1037, 1053
TfiI	GAWTC	4 cut(s)	38, 91, 488, 500
Tru1I	TTAA	4 cut(s)	18, 231, 480, 1041
Tru9I	TTAA	4 cut(s)	18, 231, 480, 1041
TscAI	CASTG	2 cut(s)	36, 1083
TseI	GCWGC	1 cut(s)	1004
TspDTI	ATGAA	7 cut(s)	24, 492, 508, 757, 774, 825, 983
TspGWI	ACGGA	1 cut(s)	361
TspRI	CASTG	2 cut(s)	36, 1083
XapI	RAATTY	1 cut(s)	235
XceI	RCATGY	3 cut(s)	392, 479, 853
XmiI	GTMKAC	1 cut(s)	397
XmnI	GAANNNNTTC	1 cut(s)	130
XspI	CTAG	3 cut(s)	369, 452, 689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.