FvH4_5g24370

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
15745316 .. 15746620
1305 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g24370.t1

Sequence Viewer

Length: 1305 bp
ATGGCTTCACCAACGCTTGCATGCTTCACTCTTCTTATATCAGTTATTTCCACTACTACTATTACAACTTCCTTCACCGTCGACCTCATCCACCGCGACTCCCCACTCTCTCCCTCCTATGACTCCTCAACCACCCACTTCCGCCGTCTCCGCGAGTCCTTCCTCCGCTCCATCGCACGTGCCTCTCGCTTCACACACGCCGCCGCCACCCCCACAATCGAGTCAACAGTGATCTCGAGCTCCGGAGAGTATCTCATGAACCTCTCCGTCGGAACCCCACCGGTGCAACTCCTCGGGATCGCCGACACCGGCAGTGACCTCATATGGACACAATGCAAGCCATGCAAGCAGTGCTTCAACCAAAACCCTCCCCTCTTCGACCCGGCTCACTCCTCCACCTACAAAACCCTACCATGCCAGTCCAGCTCATGCTCCGACCTCGACCAAGCCACCTGCGCGGCCACCACCTCCGGCCAAGACACGTGTCAGTACAGCTACCGTTACGGAGACCGCTCCTACACACATGGCAGTCTCTCTGTCGAAACCTTCATCGTCGGTAAGGTCTCGCTTCCCAAGATTGTCTTCGGTTGCGGCCATGATAACGGCGGCACTTTCGACGAGTCCGGCTCCGGTCTGATCGGACTAGGTGGCGGACCACTTTCTTTCATTTCTCAGTTATCAAAATCGACCAACGGAGGGAAGTTCTCCTATTGCTTGGTTCCTACGGCAGCCAAATCCGACGTAGCGAGCAAGATCAGCTTCGGTTCAGCTAGCATTGTCTCCGGTGCCGGCACCGTTTCAACTTCTTTGGTCTCCAAACAACCCAACACCTTCTATTACCTCACTCTCGAGGCCATTAGCGTAGGAGAAAAGAAGGTACTCTACAAGAGCCAATCAAACAAGGCCGTCGCCGGAAGTGAGGGTAACATTATTATCGACTCCGGGACTACATTGACGCTTCTTCCTCCCGGTTTCCACGACGACGTCGTTGCGGCTCTGGAGGCAGCTATTAATGCAGAGCGGGTGAGTGATCCAAGAGGCGTTCTGAGTCTTTGCTTCAAGAGCAAGAAAGATGACATCGGTGTTCCGGTTATAACGGCGCATTTCAGCGGCGGCGCTGACGTCAAGTTGAATGCTTTGAACACGTTTGCGAGGGTGGAGGATGACATGGTTTGCTTTACCATGATTCCGGCGGATGACGTTGCGATATTTGGGAACCTGGCTCAGATCAACTTCCTGGTGGGATATGACCTAGATGAAGGGACTGTTTCCTTCAAGCCAACTGATTGCACCAAGCATCGTTAA

Protein Analysis

435

Amino Acids

45.99

Weight (kDa)

5.85

Isoelectric Point (pI)

31.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp PF00026 83 - 425 4.9e-18 Eukaryotic aspartyl protease
TAXi_N PF14543 84 - 256 9.7e-52 Xylanase inhibitor N-terminal
TAXi_C PF14541 279 - 426 2.7e-25 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1094
AarI CACCTGC 1 cut(s) 461
AatII GACGTC 2 cut(s) 987, 1125
Acc36I ACCTGC 1 cut(s) 461
AccB1I GGYRCC 2 cut(s) 785, 791
AccBSI CCGCTC 3 cut(s) 168, 513, 1021
AccI GTMKAC 1 cut(s) 81
AccII CGCG 3 cut(s) 96, 153, 458
AccIII TCCGGA 1 cut(s) 242
AclWI GGATC 2 cut(s) 305, 1025
AcoI YGGCCR 3 cut(s) 459, 472, 592
AcvI CACGTG 2 cut(s) 179, 483
AcyI GRCGYC 2 cut(s) 984, 1122
AfaI GTAC 2 cut(s) 491, 879
AfiI CCNNNNNNNGG 1 cut(s) 696
AflIII ACRYGT 3 cut(s) 480, 482, 1143
AgeI ACCGGT 1 cut(s) 280
AgsI TTSAA 6 cut(s) 358, 801, 1060, 1132, 1141, 1276
AjnI CCWGG 2 cut(s) 1218, 1236
AjuI GAANNNNNNNTTGG 2 cut(s) 566, 598
AluBI AGCT 6 cut(s) 240, 426, 495, 759, 770, 1007
AluI AGCT 6 cut(s) 240, 426, 495, 759, 770, 1007
Alw21I GWGCWC 1 cut(s) 242
Alw26I GTCTC 6 cut(s) 152, 501, 536, 568, 784, 817
AlwI GGATC 2 cut(s) 305, 1025
Ama87I CYCGRG 3 cut(s) 235, 293, 848
Aor13HI TCCGGA 1 cut(s) 242
AoxI GGCC 5 cut(s) 459, 472, 592, 852, 903
ApeKI GCWGC 2 cut(s) 728, 1004
AseI ATTAAT 1 cut(s) 1011
AsiGI ACCGGT 1 cut(s) 280
AspLEI GCGC 3 cut(s) 458, 1102, 1118
AspS9I GGNCC 1 cut(s) 653
AsuC2I CCSGG 3 cut(s) 383, 943, 969
AsuHPI GGTGA 2 cut(s) 67, 1036
AsuNHI GCTAGC 1 cut(s) 770
AvaI CYCGRG 3 cut(s) 235, 293, 848
AvaII GGWCC 1 cut(s) 653
BanI GGYRCC 2 cut(s) 785, 791
BanII GRGCYC 1 cut(s) 242
BarI GAAGNNNNNNTAC 2 cut(s) 866, 898
BbrPI CACGTG 2 cut(s) 179, 483
BbsI GAAGAC 1 cut(s) 574
Bbv12I GWGCWC 1 cut(s) 242
BbvI GCAGC 2 cut(s) 740, 1016
BccI CCATC 1 cut(s) 179
BceAI ACGGC 5 cut(s) 129, 619, 741, 890, 1113
BcgI CGANNNNNNTGC 2 cut(s) 971, 1005
BciT130I CCWGG 2 cut(s) 1220, 1238
BcnI CCSGG 3 cut(s) 383, 943, 969
BcoDI GTCTC 6 cut(s) 152, 501, 536, 568, 784, 817
BfaI CTAG 3 cut(s) 644, 771, 1253
BfoI RGCGCY 1 cut(s) 1119
BfuAI ACCTGC 1 cut(s) 461
Bme1390I CCNGG 5 cut(s) 383, 943, 969, 1220, 1238
Bme18I GGWCC 1 cut(s) 653
BmeT110I CYCGRG 3 cut(s) 235, 293, 848
BmgT120I GGNCC 1 cut(s) 653
BmiI GGNNCC 6 cut(s) 274, 628, 720, 787, 793, 1217
BmrFI CCNGG 5 cut(s) 383, 943, 969, 1220, 1238
BmtI GCTAGC 1 cut(s) 774
BoxI GACNNNNGTC 1 cut(s) 483
BpiI GAAGAC 1 cut(s) 574
BplI GAGNNNNNCTC 4 cut(s) 237, 269, 611, 643
BpmI CTGGAG 1 cut(s) 1019
BpuMI CCSGG 3 cut(s) 383, 943, 969
BsaAI YACGTR 2 cut(s) 179, 483
BsaHI GRCGYC 2 cut(s) 984, 1122
BsaI GGTCTC 3 cut(s) 501, 568, 817
BsaJI CCNNGG 1 cut(s) 292
BsaWI WCCGGW 5 cut(s) 242, 280, 629, 782, 1087
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 1 cut(s) 696
Bse118I RCCGGY 3 cut(s) 280, 308, 788
Bse1I ACTGG 1 cut(s) 418
BseAI TCCGGA 1 cut(s) 242
BseBI CCWGG 2 cut(s) 1220, 1238
BseDI CCNNGG 1 cut(s) 292
BseGI GGATG 3 cut(s) 87, 1168, 1201
BseLI CCNNNNNNNGG 1 cut(s) 696
BseMII CTCAG 3 cut(s) 686, 1037, 1238
BseNI ACTGG 1 cut(s) 418
BseRI GAGGAG 3 cut(s) 115, 281, 382
BseXI GCAGC 2 cut(s) 740, 1016
Bsh1236I CGCG 3 cut(s) 96, 153, 458
BshFI GGCC 5 cut(s) 461, 474, 594, 854, 905
BshNI GGYRCC 2 cut(s) 785, 791
BshTI ACCGGT 1 cut(s) 280
BsiHKAI GWGCWC 1 cut(s) 242
BsiHKCI CYCGRG 3 cut(s) 235, 293, 848
BslFI GGGAC 2 cut(s) 958, 1276
BslI CCNNNNNNNGG 1 cut(s) 696
BsmAI GTCTC 6 cut(s) 152, 501, 536, 568, 784, 817
BsmBI CGTCTC 1 cut(s) 152
BsmFI GGGAC 2 cut(s) 958, 1276
BsmI GAATGC 1 cut(s) 1138
BsnI GGCC 5 cut(s) 461, 474, 594, 854, 905
Bso31I GGTCTC 3 cut(s) 501, 568, 817
BsoBI CYCGRG 3 cut(s) 235, 293, 848
Bsp1286I GDGCHC 1 cut(s) 242
Bsp13I TCCGGA 1 cut(s) 242
Bsp143I GATC 6 cut(s) 231, 297, 636, 753, 1030, 1227
BspANI GGCC 5 cut(s) 461, 474, 594, 854, 905
BspCNI CTCAG 3 cut(s) 685, 1038, 1237
BspEI TCCGGA 1 cut(s) 242
BspFNI CGCG 3 cut(s) 96, 153, 458
BspHI TCATGA 1 cut(s) 255
BspLI GGNNCC 6 cut(s) 274, 628, 720, 787, 793, 1217
BspMI ACCTGC 1 cut(s) 461
BspOI GCTAGC 1 cut(s) 774
BspPI GGATC 2 cut(s) 305, 1025
BspT107I GGYRCC 2 cut(s) 785, 791
BspTNI GGTCTC 3 cut(s) 501, 568, 817
BsrBI CCGCTC 3 cut(s) 168, 513, 1021
BsrFI RCCGGY 3 cut(s) 280, 308, 788
BsrI ACTGG 1 cut(s) 418
BssAI RCCGGY 3 cut(s) 280, 308, 788
BssECI CCNNGG 1 cut(s) 292
BssMI GATC 6 cut(s) 231, 297, 636, 753, 1030, 1227
BssNI GRCGYC 2 cut(s) 984, 1122
Bst2UI CCWGG 2 cut(s) 1220, 1238
Bst4CI ACNGT 5 cut(s) 79, 229, 500, 796, 1267
Bst6I CTCTTC 2 cut(s) 36, 380
BstACI GRCGYC 2 cut(s) 984, 1122
BstAPI GCANNNNNTGC 2 cut(s) 342, 351
BstBAI YACGTR 2 cut(s) 179, 483
BstC8I GCNNGC 7 cut(s) 18, 22, 338, 347, 748, 772, 790
BstDEI CTNAG 3 cut(s) 672, 1046, 1224
BstF5I GGATG 3 cut(s) 87, 1168, 1201
BstFNI CGCG 3 cut(s) 96, 153, 458
BstH2I RGCGCY 1 cut(s) 1119
BstHHI GCGC 3 cut(s) 458, 1102, 1118
BstKTI GATC 6 cut(s) 234, 300, 639, 756, 1033, 1230
BstMAI GTCTC 6 cut(s) 152, 501, 536, 568, 784, 817
BstMBI GATC 6 cut(s) 231, 297, 636, 753, 1030, 1227
BstNI CCWGG 2 cut(s) 1220, 1238
BstNSI RCATGY 1 cut(s) 24
BstPAI GACNNNNGTC 1 cut(s) 483
BstSCI CCNGG 5 cut(s) 381, 941, 967, 1218, 1236
BstUI CGCG 3 cut(s) 96, 153, 458
BstV1I GCAGC 2 cut(s) 740, 1016
BstV2I GAAGAC 1 cut(s) 574
BsuRI GGCC 5 cut(s) 461, 474, 594, 854, 905
BtgZI GCGATG 1 cut(s) 157
BtsCI GGATG 3 cut(s) 87, 1168, 1201
BtsI GCAGTG 2 cut(s) 319, 356
BtsIMutI CAGTG 3 cut(s) 234, 319, 356
BveI ACCTGC 1 cut(s) 461
Cac8I GCNNGC 7 cut(s) 18, 22, 338, 347, 748, 772, 790
CciI TCATGA 1 cut(s) 255
CfoI GCGC 3 cut(s) 458, 1102, 1118
Cfr10I RCCGGY 3 cut(s) 280, 308, 788
Cfr13I GGNCC 1 cut(s) 653
CseI GACGC 1 cut(s) 964
Csp6I GTAC 2 cut(s) 490, 878
CspAI ACCGGT 1 cut(s) 280
CviAII CATG 9 cut(s) 21, 256, 342, 414, 429, 524, 596, 1168, 1183
CviQI GTAC 2 cut(s) 490, 878
DdeI CTNAG 3 cut(s) 672, 1046, 1224
DpnI GATC 6 cut(s) 233, 299, 638, 755, 1032, 1229
DpnII GATC 6 cut(s) 231, 297, 636, 753, 1030, 1227
EaeI YGGCCR 3 cut(s) 459, 472, 592
Eam1104I CTCTTC 2 cut(s) 36, 380
EarI CTCTTC 2 cut(s) 36, 380
EciI GGCGGA 3 cut(s) 131, 666, 1208
Ecl136II GAGCTC 1 cut(s) 240
Eco24I GRGCYC 1 cut(s) 242
Eco31I GGTCTC 3 cut(s) 501, 568, 817
Eco47I GGWCC 1 cut(s) 653
Eco53kI GAGCTC 1 cut(s) 240
Eco72I CACGTG 2 cut(s) 179, 483
Eco88I CYCGRG 3 cut(s) 235, 293, 848
EcoICRI GAGCTC 1 cut(s) 240
EcoRII CCWGG 2 cut(s) 1218, 1236
EcoT38I GRGCYC 1 cut(s) 242
Esp3I CGTCTC 1 cut(s) 152
FaeI CATG 9 cut(s) 24, 259, 345, 417, 432, 527, 599, 1171, 1186
FalI AAGNNNNNCTT 6 cut(s) 338, 370, 566, 598, 743, 775
FaqI GGGAC 2 cut(s) 958, 1276
FatI CATG 9 cut(s) 20, 255, 341, 413, 428, 523, 595, 1167, 1182
FauI CCCGC 1 cut(s) 1014
FauNDI CATATG 1 cut(s) 323
FblI GTMKAC 1 cut(s) 81
FokI GGATG 3 cut(s) 74, 1175, 1208
FriOI GRGCYC 1 cut(s) 242
FspBI CTAG 3 cut(s) 644, 771, 1253
GlaI GCGC 3 cut(s) 457, 1101, 1117
GsuI CTGGAG 1 cut(s) 1019
HaeII RGCGCY 1 cut(s) 1119
HaeIII GGCC 5 cut(s) 461, 474, 594, 854, 905
HgaI GACGC 1 cut(s) 964
HhaI GCGC 3 cut(s) 458, 1102, 1118
Hin1I GRCGYC 2 cut(s) 984, 1122
Hin1II CATG 9 cut(s) 24, 259, 345, 417, 432, 527, 599, 1171, 1186
Hin6I GCGC 3 cut(s) 456, 1100, 1116
HinP1I GCGC 3 cut(s) 456, 1100, 1116
HincII GTYRAC 2 cut(s) 82, 225
HindII GTYRAC 2 cut(s) 82, 225
HinfI GANTC 8 cut(s) 98, 122, 155, 221, 620, 938, 1048, 1186
HphI GGTGA 2 cut(s) 67, 1036
Hpy166II GTNNAC 2 cut(s) 82, 225
Hpy188I TCNGA 7 cut(s) 272, 436, 636, 641, 739, 1047, 1227
Hpy188III TCNNGA 7 cut(s) 235, 243, 256, 295, 848, 998, 1060
Hpy8I GTNNAC 2 cut(s) 82, 225
Hpy99I CGWCG 9 cut(s) 83, 272, 557, 620, 743, 911, 983, 986, 989
HpyAV CCTTC 7 cut(s) 82, 169, 556, 841, 868, 1253, 1282
HpyCH4III ACNGT 5 cut(s) 79, 229, 500, 796, 1267
HpyCH4IV ACGT 7 cut(s) 178, 482, 741, 984, 1122, 1145, 1200
HpyCH4V TGCA 6 cut(s) 20, 286, 336, 345, 1016, 1290
HpyF3I CTNAG 3 cut(s) 672, 1046, 1224
HpySE526I ACGT 7 cut(s) 178, 482, 741, 984, 1122, 1145, 1200
Hsp92I GRCGYC 2 cut(s) 984, 1122
Hsp92II CATG 9 cut(s) 24, 259, 345, 417, 432, 527, 599, 1171, 1186
HspAI GCGC 3 cut(s) 456, 1100, 1116
Kpn2I TCCGGA 1 cut(s) 242
KroI GCCGGC 1 cut(s) 788
KroNI GCCGGC 1 cut(s) 790
Kzo9I GATC 6 cut(s) 231, 297, 636, 753, 1030, 1227
LmnI GCTCC 5 cut(s) 173, 245, 437, 518, 632
Lsp1109I GCAGC 2 cut(s) 740, 1016
MaeI CTAG 3 cut(s) 644, 771, 1253
MaeII ACGT 7 cut(s) 178, 482, 741, 984, 1122, 1145, 1200
MaeIII GTNAC 3 cut(s) 314, 500, 923
MalI GATC 6 cut(s) 233, 299, 638, 755, 1032, 1229
MbiI CCGCTC 3 cut(s) 168, 513, 1021
MboI GATC 6 cut(s) 231, 297, 636, 753, 1030, 1227
MboII GAAGA 4 cut(s) 23, 367, 574, 953
MhlI GDGCHC 1 cut(s) 242
MlyI GAGTC 7 cut(s) 92, 116, 164, 230, 629, 932, 1057
MmeI TCCRAC 3 cut(s) 250, 459, 762
MroI TCCGGA 1 cut(s) 242
MroNI GCCGGC 1 cut(s) 788
MseI TTAA 2 cut(s) 1011, 1303
MspA1I CMGCKG 1 cut(s) 1110
MspR9I CCNGG 5 cut(s) 383, 943, 969, 1220, 1238
Mva1269I GAATGC 1 cut(s) 1138
MvaI CCWGG 2 cut(s) 1220, 1238
MvnI CGCG 3 cut(s) 96, 153, 458
NaeI GCCGGC 1 cut(s) 790
NciI CCSGG 3 cut(s) 383, 943, 969
NdeI CATATG 1 cut(s) 323
NdeII GATC 6 cut(s) 231, 297, 636, 753, 1030, 1227
NgoMIV GCCGGC 1 cut(s) 788
NheI GCTAGC 1 cut(s) 770
NlaIII CATG 9 cut(s) 24, 259, 345, 417, 432, 527, 599, 1171, 1186
NlaIV GGNNCC 6 cut(s) 274, 628, 720, 787, 793, 1217
NmuCI GTSAC 1 cut(s) 314
NspI RCATGY 1 cut(s) 24
PaeI GCATGC 1 cut(s) 24
PaeR7I CTCGAG 2 cut(s) 235, 848
PagI TCATGA 1 cut(s) 255
PaqCI CACCTGC 1 cut(s) 461
PcsI WCGNNNNNNNCGW 2 cut(s) 300, 984
PctI GAATGC 1 cut(s) 1138
PdiI GCCGGC 1 cut(s) 790
PfeI GAWTC 1 cut(s) 1186
PflFI GACNNNGTC 1 cut(s) 983
PfoI TCCNGGA 1 cut(s) 941
PinAI ACCGGT 1 cut(s) 280
PleI GAGTC 7 cut(s) 92, 116, 163, 229, 628, 932, 1056
PmaCI CACGTG 2 cut(s) 179, 483
PmlI CACGTG 2 cut(s) 179, 483
PpsI GAGTC 7 cut(s) 92, 116, 163, 229, 628, 932, 1056
Ppu21I YACGTR 2 cut(s) 179, 483
PshAI GACNNNNGTC 1 cut(s) 483
PshBI ATTAAT 1 cut(s) 1011
PsiI TTATAA 1 cut(s) 1094
Psp124BI GAGCTC 1 cut(s) 242
Psp6I CCWGG 2 cut(s) 1218, 1236
PspCI CACGTG 2 cut(s) 179, 483
PspGI CCWGG 2 cut(s) 1218, 1236
PspN4I GGNNCC 6 cut(s) 274, 628, 720, 787, 793, 1217
PspPI GGNCC 1 cut(s) 653
PsyI GACNNNGTC 1 cut(s) 983
RsaI GTAC 2 cut(s) 491, 879
RsaNI GTAC 2 cut(s) 490, 878
SacI GAGCTC 1 cut(s) 242
SalI GTCGAC 1 cut(s) 80
SaqAI TTAA 2 cut(s) 1011, 1303
Sau3AI GATC 6 cut(s) 231, 297, 636, 753, 1030, 1227
Sau96I GGNCC 1 cut(s) 653
SchI GAGTC 7 cut(s) 92, 116, 164, 230, 629, 932, 1057
ScrFI CCNGG 5 cut(s) 383, 943, 969, 1220, 1238
SduI GDGCHC 1 cut(s) 242
Sfr274I CTCGAG 2 cut(s) 235, 848
SgrAI CRCCGGYG 1 cut(s) 280
SinI GGWCC 1 cut(s) 653
SlaI CTCGAG 2 cut(s) 235, 848
SmlI CTYRAG 2 cut(s) 235, 848
SmoI CTYRAG 2 cut(s) 235, 848
SphI GCATGC 1 cut(s) 24
SspMI CTAG 3 cut(s) 644, 771, 1253
SstI GAGCTC 1 cut(s) 242
StyD4I CCNGG 5 cut(s) 381, 941, 967, 1218, 1236
TaaI ACNGT 5 cut(s) 79, 229, 500, 796, 1267
TaiI ACGT 7 cut(s) 181, 485, 744, 987, 1125, 1148, 1203
TatI WGTACW 1 cut(s) 489
TauI GCSGC 8 cut(s) 203, 206, 461, 594, 609, 995, 1113, 1116
TfiI GAWTC 1 cut(s) 1186
Tru1I TTAA 2 cut(s) 1011, 1303
Tru9I TTAA 2 cut(s) 1011, 1303
TscAI CASTG 3 cut(s) 234, 319, 356
TseFI GTSAC 1 cut(s) 314
TseI GCWGC 2 cut(s) 728, 1004
Tsp45I GTSAC 1 cut(s) 314
TspDTI ATGAA 4 cut(s) 272, 538, 655, 1272
TspGWI ACGGA 3 cut(s) 256, 519, 708
TspRI CASTG 3 cut(s) 234, 319, 356
Tth111I GACNNNGTC 1 cut(s) 983
VpaK11BI GGWCC 1 cut(s) 653
VspI ATTAAT 1 cut(s) 1011
XceI RCATGY 1 cut(s) 24
XhoI CTCGAG 2 cut(s) 235, 848
XmiI GTMKAC 1 cut(s) 81
XspI CTAG 3 cut(s) 644, 771, 1253
ZraI GACGTC 2 cut(s) 985, 1123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.