Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006976

Physical Location & Seq

Genomic Coordinates Reverse (-)

26244905 .. 26246212

Gene Structure 1308 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018161

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGAACATCTCCATCGGAACCCCACCGGTTGAGGTTCTTGGAATAGCTGACACAGGCAGTGATCTTATCTGGACCCAATGCAAGCCGTGCACGCAATGCTTCAACCAAAACCCACCTCTCTTCGATCCTAAGCGCTCCACCACGTATCGAACCGTCCCCTGTCAGTCCAACTCATGCTCCAATCTTGAAGAAGCCTCTTGCGGTGCGGACCACGGTGACACTTGTGTGTACAGTTATCGTTACGGAGATCGTTCGTTCACTCGGGGGAGTCTAGCTCAGGAGACCTTCACCATCGGCTCCGCTTCCGGTCGGCCGGTTTCCCTTCCCAAAGTCATTTTCGGTTGTGGACATGAAAACGGTGGCACATTTGATGAGTCCGGCTCTGGCTTGATCGGTCTTGGCGCTGGTCCACTTTCTTTCATTTCTCAACTAAACGGAGGGAAATTTTCCTATTGCTTGGTACCCACGTCAGCTAAATCCTCCGTTGCAAGCAAAATAAGTTTTGGTACTGCCAGAATAGTCTCAGGCAACGGTGCCGTCTCAACTCCTCTAGTTTCCAAACAACCCAACACGTTCTATTACCTTACACTTGAAGCAATTAGCGTTGGAGAAAAGAGACTATCCTACAAGACCAGCCAATCCACTAAGGCTGTTGCTGCCAGTGACGGTAGTGAGGGTAACATAATCATCGACTCCGGGACTACGCTGACCTTGCTTCCACTTGGGTTCTACAACGACGTCGTCTCGGCTTTGGAAGTGGCGATTAATGCAGAGCGTGATAGTGATCCGAAGGGGGTTCTGAGTCTTTGTTTTAGAAGCAGAAGTGATCCTGACATTAATGTCCCCGTTATCACTGCGCATTTTAGTGGTGCTGATGTGAAGTTGAACGCTTTGAACACGTTTGCTAGGGTGGAGGATGATATGGTTTGCTTTACGATGATTCCGTCTGATGACGTGGCGATCTTCGGAAACTTGGCTCAAATGAACTTCCTGGTGGGTTATGACCTTGAGGAAAGTACTGTGTCCTTTAAGCCAGCTGATTGCACCAAGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04071 ko04138 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04138 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

352

Amino Acids

37.23

Weight (kDa)

4.99

Isoelectric Point (pI)

31.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	1 - 169	1.1e-53	Xylanase inhibitor N-terminal
Asp	PF00026	2 - 344	3.9e-16	Eukaryotic aspartyl protease
TAXi_C	PF14541	193 - 344	2.5e-26	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31450 AT2G35615
fragaria_vesca	FvH4_1g21300 FvH4_5g24370
malus_domestica	MD06G1021800.v1.1 MD16G1288400.v1.1
prunus_persica	Prupe.5G017100_v2.0.a1
pyrus_communis	pycom06g01570
rosa_chinensis	RchiOBHm_Chr2g0115131 RchiOBHm_Chr7g0214751
rosa_laevigata	RLG00000002724 RLG00000018161
rosa_roxburghii	Rroxscaffold_2G00130610 Rroxscaffold_3G00245120
rosa_rugosa	Rorug02G0193900
rosa_samantha	Rh2AG252400 Rh2BG261900 Rh2CG256900 Rh2DG260600 Rh7AG283700 Rh7BG274400 Rh7CG303100 Rh7DG287100
rosa_wichuraiana	Rw2G019680 Rw7G024190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	839
AatII	GACGTC	1 cut(s)	741
Acc16I	TGCGCA	1 cut(s)	858
Acc65I	GGTACC	1 cut(s)	460
AccB1I	GGYRCC	2 cut(s)	460, 533
AciI	CCGC	3 cut(s)	201, 206, 300
AclWI	GGATC	3 cut(s)	119, 779, 821
AcoI	YGGCCR	1 cut(s)	311
AcsI	RAATTY	1 cut(s)	443
AcyI	GRCGYC	1 cut(s)	738
AfaI	GTAC	4 cut(s)	230, 462, 508, 1018
AfeI	AGCGCT	1 cut(s)	134
AflIII	ACRYGT	2 cut(s)	570, 897
AgeI	ACCGGT	1 cut(s)	25
AgsI	TTSAA	5 cut(s)	103, 188, 593, 886, 895
AjiI	CACGTC	2 cut(s)	468, 955
AjnI	CCWGG	1 cut(s)	990
AjuI	GAANNNNNNNTTGG	2 cut(s)	320, 352
AleI	CACNNNNGTG	1 cut(s)	224
AluBI	AGCT	4 cut(s)	47, 275, 473, 1037
AluI	AGCT	4 cut(s)	47, 275, 473, 1037
Alw21I	GWGCWC	1 cut(s)	92
Alw26I	GTCTC	5 cut(s)	275, 526, 544, 610, 748
Alw44I	GTGCAC	1 cut(s)	88
AlwI	GGATC	3 cut(s)	119, 779, 821
Ama87I	CYCGRG	1 cut(s)	261
Aor51HI	AGCGCT	1 cut(s)	134
AoxI	GGCC	1 cut(s)	311
ApaLI	GTGCAC	1 cut(s)	88
ApeKI	GCWGC	1 cut(s)	656
ApoI	RAATTY	1 cut(s)	443
AseI	ATTAAT	2 cut(s)	765, 837
AsiGI	ACCGGT	1 cut(s)	25
Asp718I	GGTACC	1 cut(s)	460
AspLEI	GCGC	3 cut(s)	135, 404, 859
AspS9I	GGNCC	3 cut(s)	72, 208, 407
AsuC2I	CCSGG	1 cut(s)	697
AsuHPI	GGTGA	2 cut(s)	227, 280
AvaI	CYCGRG	1 cut(s)	261
AvaII	GGWCC	3 cut(s)	72, 208, 407
BaeGI	GKGCMC	1 cut(s)	92
BaeI	ACNNNNGTAYC	2 cut(s)	452, 485
BanI	GGYRCC	2 cut(s)	460, 533
Bbv12I	GWGCWC	1 cut(s)	92
BbvI	GCAGC	1 cut(s)	643
BccI	CCATC	2 cut(s)	20, 299
BceAI	ACGGC	2 cut(s)	70, 521
BciT130I	CCWGG	1 cut(s)	992
BcnI	CCSGG	1 cut(s)	697
BcoDI	GTCTC	5 cut(s)	275, 526, 544, 610, 748
BfaI	CTAG	3 cut(s)	272, 551, 906
BfoI	RGCGCY	2 cut(s)	136, 405
BisI	GCNGC	1 cut(s)	657
BlsI	GCNGC	1 cut(s)	658
BmcAI	AGTACT	1 cut(s)	1018
Bme1390I	CCNGG	2 cut(s)	697, 992
Bme18I	GGWCC	3 cut(s)	72, 208, 407
BmeT110I	CYCGRG	1 cut(s)	261
BmgBI	CACGTC	2 cut(s)	468, 955
BmgT120I	GGNCC	3 cut(s)	72, 208, 407
BmiI	GGNNCC	5 cut(s)	19, 74, 298, 462, 535
BmrFI	CCNGG	2 cut(s)	697, 992
BplI	GAGNNNNNCTC	4 cut(s)	259, 291, 365, 397
Bpu10I	CCTNAGC	2 cut(s)	129, 276
BpuEI	CTTGAG	1 cut(s)	1028
BpuMI	CCSGG	1 cut(s)	697
BsaAI	YACGTR	1 cut(s)	144
BsaBI	GATNNNNATC	1 cut(s)	783
BsaHI	GRCGYC	1 cut(s)	738
BsaI	GGTCTC	1 cut(s)	275
BsaJI	CCNNGG	1 cut(s)	211
BsaWI	WCCGGW	2 cut(s)	25, 305
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bse118I	RCCGGY	2 cut(s)	25, 313
Bse1I	ACTGG	1 cut(s)	660
Bse3DI	GCAATG	1 cut(s)	101
Bse8I	GATNNNNATC	1 cut(s)	783
BseBI	CCWGG	1 cut(s)	992
BseDI	CCNNGG	1 cut(s)	211
BseGI	GGATG	1 cut(s)	922
BseJI	GATNNNNATC	1 cut(s)	783
BseMI	GCAATG	1 cut(s)	101
BseMII	CTCAG	3 cut(s)	290, 537, 791
BseNI	ACTGG	1 cut(s)	660
BseRI	GAGGAG	1 cut(s)	537
BseSI	GKGCMC	1 cut(s)	92
BseX3I	CGGCCG	1 cut(s)	311
BseXI	GCAGC	1 cut(s)	643
Bsh1285I	CGRYCG	2 cut(s)	310, 314
BshFI	GGCC	1 cut(s)	313
BshNI	GGYRCC	2 cut(s)	460, 533
BshTI	ACCGGT	1 cut(s)	25
BsiEI	CGRYCG	2 cut(s)	310, 314
BsiHKAI	GWGCWC	1 cut(s)	92
BsiHKCI	CYCGRG	1 cut(s)	261
BsiSI	CCGG	5 cut(s)	26, 306, 314, 378, 696
BslFI	GGGAC	3 cut(s)	140, 712, 827
BsmAI	GTCTC	5 cut(s)	275, 526, 544, 610, 748
BsmBI	CGTCTC	2 cut(s)	544, 748
BsmFI	GGGAC	3 cut(s)	140, 712, 827
BsnI	GGCC	1 cut(s)	313
Bso31I	GGTCTC	1 cut(s)	275
BsoBI	CYCGRG	1 cut(s)	261
Bsp1286I	GDGCHC	1 cut(s)	92
Bsp1407I	TGTACA	1 cut(s)	228
Bsp143I	GATC	7 cut(s)	61, 124, 247, 390, 784, 826, 960
BspACI	CCGC	3 cut(s)	201, 206, 300
BspANI	GGCC	1 cut(s)	313
BspCNI	CTCAG	3 cut(s)	289, 536, 792
BspLI	GGNNCC	5 cut(s)	19, 74, 298, 462, 535
BspPI	GGATC	3 cut(s)	119, 779, 821
BspT107I	GGYRCC	2 cut(s)	460, 533
BspTNI	GGTCTC	1 cut(s)	275
BsrDI	GCAATG	1 cut(s)	101
BsrFI	RCCGGY	2 cut(s)	25, 313
BsrGI	TGTACA	1 cut(s)	228
BsrI	ACTGG	1 cut(s)	660
BssAI	RCCGGY	2 cut(s)	25, 313
BssECI	CCNNGG	1 cut(s)	211
BssMI	GATC	7 cut(s)	61, 124, 247, 390, 784, 826, 960
BssNI	GRCGYC	1 cut(s)	738
Bst2UI	CCWGG	1 cut(s)	992
Bst4CI	ACNGT	7 cut(s)	154, 215, 233, 359, 533, 668, 1021
Bst6I	CTCTTC	1 cut(s)	125
BstACI	GRCGYC	1 cut(s)	738
BstAPI	GCANNNNNTGC	2 cut(s)	87, 96
BstAUI	TGTACA	1 cut(s)	228
BstBAI	YACGTR	1 cut(s)	144
BstC8I	GCNNGC	4 cut(s)	83, 92, 490, 1035
BstDEI	CTNAG	5 cut(s)	129, 276, 523, 645, 800
BstDSI	CCRYGG	1 cut(s)	211
BstF5I	GGATG	1 cut(s)	922
BstH2I	RGCGCY	2 cut(s)	136, 405
BstHHI	GCGC	3 cut(s)	135, 404, 859
BstKTI	GATC	7 cut(s)	64, 127, 250, 393, 787, 829, 963
BstMAI	GTCTC	5 cut(s)	275, 526, 544, 610, 748
BstMBI	GATC	7 cut(s)	61, 124, 247, 390, 784, 826, 960
BstMCI	CGRYCG	2 cut(s)	310, 314
BstMWI	GCNNNNNNNGC	6 cut(s)	87, 91, 96, 656, 712, 767
BstNI	CCWGG	1 cut(s)	992
BstSCI	CCNGG	2 cut(s)	695, 990
BstSLI	GKGCMC	1 cut(s)	92
BstV1I	GCAGC	1 cut(s)	643
BstZI	CGGCCG	1 cut(s)	311
BsuRI	GGCC	1 cut(s)	313
BtgI	CCRYGG	1 cut(s)	211
BtrI	CACGTC	2 cut(s)	468, 955
BtsCI	GGATG	1 cut(s)	922
BtsI	GCAGTG	2 cut(s)	64, 852
BtsIMutI	CAGTG	3 cut(s)	64, 667, 852
Cac8I	GCNNGC	4 cut(s)	83, 92, 490, 1035
CfoI	GCGC	3 cut(s)	135, 404, 859
Cfr10I	RCCGGY	2 cut(s)	25, 313
Cfr13I	GGNCC	3 cut(s)	72, 208, 407
Csp6I	GTAC	4 cut(s)	229, 461, 507, 1017
CspAI	ACCGGT	1 cut(s)	25
CviAII	CATG	2 cut(s)	174, 350
CviQI	GTAC	4 cut(s)	229, 461, 507, 1017
DdeI	CTNAG	5 cut(s)	129, 276, 523, 645, 800
DpnI	GATC	7 cut(s)	63, 126, 249, 392, 786, 828, 962
DpnII	GATC	7 cut(s)	61, 124, 247, 390, 784, 826, 960
DrdI	GACNNNNNNGTC	1 cut(s)	839
DseDI	GACNNNNNNGTC	1 cut(s)	839
EaeI	YGGCCR	1 cut(s)	311
EagI	CGGCCG	1 cut(s)	311
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
EclXI	CGGCCG	1 cut(s)	311
Eco31I	GGTCTC	1 cut(s)	275
Eco47I	GGWCC	3 cut(s)	72, 208, 407
Eco47III	AGCGCT	1 cut(s)	134
Eco52I	CGGCCG	1 cut(s)	311
Eco88I	CYCGRG	1 cut(s)	261
EcoRII	CCWGG	1 cut(s)	990
Esp3I	CGTCTC	2 cut(s)	544, 748
FaeI	CATG	2 cut(s)	177, 353
FaiI	YATR	5 cut(s)	175, 351, 683, 923, 1002
FaqI	GGGAC	3 cut(s)	140, 712, 827
FatI	CATG	2 cut(s)	173, 349
Fnu4HI	GCNGC	1 cut(s)	657
FokI	GGATG	1 cut(s)	929
Fsp4HI	GCNGC	1 cut(s)	657
FspBI	CTAG	3 cut(s)	272, 551, 906
FspI	TGCGCA	1 cut(s)	858
GlaI	GCGC	3 cut(s)	134, 403, 858
GluI	GCNGC	1 cut(s)	657
HaeII	RGCGCY	2 cut(s)	136, 405
HaeIII	GGCC	1 cut(s)	313
HapII	CCGG	5 cut(s)	26, 306, 314, 378, 696
HhaI	GCGC	3 cut(s)	135, 404, 859
Hin1I	GRCGYC	1 cut(s)	738
Hin1II	CATG	2 cut(s)	177, 353
Hin6I	GCGC	3 cut(s)	133, 402, 857
HinP1I	GCGC	3 cut(s)	133, 402, 857
HinfI	GANTC	5 cut(s)	268, 374, 692, 802, 940
HpaII	CCGG	5 cut(s)	26, 306, 314, 378, 696
HphI	GGTGA	2 cut(s)	227, 280
Hpy166II	GTNNAC	5 cut(s)	90, 229, 258, 347, 410
Hpy188I	TCNGA	5 cut(s)	17, 789, 801, 949, 968
Hpy188III	TCNNGA	4 cut(s)	70, 185, 278, 830
Hpy8I	GTNNAC	5 cut(s)	90, 229, 258, 347, 410
Hpy99I	CGWCG	2 cut(s)	740, 743
HpyAV	CCTTC	3 cut(s)	295, 332, 784
HpyCH4III	ACNGT	7 cut(s)	154, 215, 233, 359, 533, 668, 1021
HpyCH4IV	ACGT	6 cut(s)	143, 467, 572, 738, 899, 954
HpyCH4V	TGCA	5 cut(s)	81, 90, 488, 770, 1044
HpyF10VI	GCNNNNNNNGC	6 cut(s)	87, 91, 96, 656, 712, 767
HpyF3I	CTNAG	5 cut(s)	129, 276, 523, 645, 800
HpySE526I	ACGT	6 cut(s)	143, 467, 572, 738, 899, 954
Hsp92I	GRCGYC	1 cut(s)	738
Hsp92II	CATG	2 cut(s)	177, 353
HspAI	GCGC	3 cut(s)	133, 402, 857
KpnI	GGTACC	1 cut(s)	464
Kzo9I	GATC	7 cut(s)	61, 124, 247, 390, 784, 826, 960
LmnI	GCTCC	3 cut(s)	140, 182, 302
Lsp1109I	GCAGC	1 cut(s)	643
MaeI	CTAG	3 cut(s)	272, 551, 906
MaeII	ACGT	6 cut(s)	143, 467, 572, 738, 899, 954
MaeIII	GTNAC	4 cut(s)	215, 239, 662, 677
MalI	GATC	7 cut(s)	63, 126, 249, 392, 786, 828, 962
MboI	GATC	7 cut(s)	61, 124, 247, 390, 784, 826, 960
MboII	GAAGA	3 cut(s)	112, 200, 955
MhlI	GDGCHC	1 cut(s)	92
MluCI	AATT	2 cut(s)	443, 597
MlyI	GAGTC	4 cut(s)	277, 383, 686, 811
MmeI	TCCRAC	2 cut(s)	192, 586
MnlI	CCTC	9 cut(s)	25, 126, 205, 431, 490, 558, 667, 907, 1003
MseI	TTAA	3 cut(s)	765, 837, 1029
MslI	CAYNNNNRTG	2 cut(s)	224, 864
MspA1I	CMGCKG	1 cut(s)	1037
MspI	CCGG	5 cut(s)	26, 306, 314, 378, 696
MspR9I	CCNGG	2 cut(s)	697, 992
MvaI	CCWGG	1 cut(s)	992
MwoI	GCNNNNNNNGC	6 cut(s)	87, 91, 96, 656, 712, 767
NciI	CCSGG	1 cut(s)	697
NdeII	GATC	7 cut(s)	61, 124, 247, 390, 784, 826, 960
NlaIII	CATG	2 cut(s)	177, 353
NlaIV	GGNNCC	5 cut(s)	19, 74, 298, 462, 535
NmeAIII	GCCGAG	1 cut(s)	725
NmuCI	GTSAC	2 cut(s)	215, 662
NsbI	TGCGCA	1 cut(s)	858
OliI	CACNNNNGTG	1 cut(s)	224
PcsI	WCGNNNNNNNCGW	1 cut(s)	941
PfeI	GAWTC	1 cut(s)	940
PflFI	GACNNNGTC	1 cut(s)	740
PfoI	TCCNGGA	1 cut(s)	695
PinAI	ACCGGT	1 cut(s)	25
PkrI	GCNGC	1 cut(s)	658
PleI	GAGTC	4 cut(s)	276, 382, 686, 810
PpsI	GAGTC	4 cut(s)	276, 382, 686, 810
Ppu21I	YACGTR	1 cut(s)	144
PshBI	ATTAAT	2 cut(s)	765, 837
Psp6I	CCWGG	1 cut(s)	990
PspGI	CCWGG	1 cut(s)	990
PspN4I	GGNNCC	5 cut(s)	19, 74, 298, 462, 535
PspPI	GGNCC	3 cut(s)	72, 208, 407
PsyI	GACNNNGTC	1 cut(s)	740
PvuII	CAGCTG	1 cut(s)	1037
RsaI	GTAC	4 cut(s)	230, 462, 508, 1018
RsaNI	GTAC	4 cut(s)	229, 461, 507, 1017
RseI	CAYNNNNRTG	2 cut(s)	224, 864
SaqAI	TTAA	3 cut(s)	765, 837, 1029
SatI	GCNGC	1 cut(s)	657
Sau3AI	GATC	7 cut(s)	61, 124, 247, 390, 784, 826, 960
Sau96I	GGNCC	3 cut(s)	72, 208, 407
ScaI	AGTACT	1 cut(s)	1018
SchI	GAGTC	4 cut(s)	277, 383, 686, 811
ScrFI	CCNGG	2 cut(s)	697, 992
SduI	GDGCHC	1 cut(s)	92
SinI	GGWCC	3 cut(s)	72, 208, 407
SmiMI	CAYNNNNRTG	2 cut(s)	224, 864
SmlI	CTYRAG	1 cut(s)	1007
SmoI	CTYRAG	1 cut(s)	1007
Sse9I	AATT	2 cut(s)	443, 597
SsiI	CCGC	3 cut(s)	201, 206, 300
SspMI	CTAG	3 cut(s)	272, 551, 906
StyD4I	CCNGG	2 cut(s)	695, 990
TaaI	ACNGT	7 cut(s)	154, 215, 233, 359, 533, 668, 1021
TaiI	ACGT	6 cut(s)	146, 470, 575, 741, 902, 957
TaqI	TCGA	3 cut(s)	123, 148, 690
TaqII	GACCGA	1 cut(s)	383
TasI	AATT	2 cut(s)	443, 597
TatI	WGTACW	2 cut(s)	228, 1016
TfiI	GAWTC	1 cut(s)	940
Tru1I	TTAA	3 cut(s)	765, 837, 1029
Tru9I	TTAA	3 cut(s)	765, 837, 1029
TscAI	CASTG	3 cut(s)	64, 667, 859
TseFI	GTSAC	2 cut(s)	215, 662
TseI	GCWGC	1 cut(s)	656
Tsp45I	GTSAC	2 cut(s)	215, 662
TspDTI	ATGAA	4 cut(s)	17, 366, 409, 998
TspGWI	ACGGA	4 cut(s)	258, 450, 472, 933
TspRI	CASTG	3 cut(s)	64, 667, 859
Tth111I	GACNNNGTC	1 cut(s)	740
VneI	GTGCAC	1 cut(s)	88
VpaK11BI	GGWCC	3 cut(s)	72, 208, 407
VspI	ATTAAT	2 cut(s)	765, 837
XapI	RAATTY	1 cut(s)	443
XspI	CTAG	3 cut(s)	272, 551, 906
ZraI	GACGTC	1 cut(s)	739
ZrmI	AGTACT	1 cut(s)	1018

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.