Prupe.5G017100_v2.0.a1

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
1835345 .. 1836718
1374 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G017100.1

Sequence Viewer

Length: 1374 bp
ATGGCATTGGCAGCTGCTCCTACTTCCACTAAGTTATATTTTCCACTTGCCCTACTTGCATGTTTCATTTTGCTCGCACAAGCCAGCAGCCATGGCTTCACTGCTGATCTCATCCACCGTGACTCCCCTCTCTCTCCTTTGTACAATTCCTCCATGTCCCACCTTGATCGCCTCCACAACGCTTTCCGTCGATCCGTGACACGTGTCCATCACTTTATAAAGCCAACAATGACTTCCCTCTCATCTTCTTTGGCCGCCCCAAATATCCAATCCATTATAATCCCAAGCGCGGGCGAATATCTCATGAACGTTTCGATTGGAACGCCGCCAGTAGAAGTCCTGGGAATAGCTGACACCGGCAGCGATCTCATTTGGACACAATGCAAGCCATGCAAGCAGTGTTTCAACCAAAACCCGCCTCTCTTTGATCCTAAAAAATCCTCAACGTACCACTCAATCCCATGCCAGTCCAGTTCCTGCACTTATCTCGAAGAAGCCGCCTGTGGCACCCTAATTAACGGCGATCACGACACGTGTGAGTACAGCTATCGATACGGAGACCGTTCGTTCACTAGAGGAACTCTAGCTCTTGAGACCCTAACCTTTGGATCTACCTCCGGCCGCCCAACTTCACTTCCAAAAGTTGTGTTCGGCTGTGGACATGAAAATGGTGGCACATTTGACGAGTCCGGGTCTGGCTTGATTGGCCTCGGAGGCGGCCCCCTTTCCCTCATTTCTCAGCTCACGAAATTGACCAACGGAGGGAAATTTTCATATTGCTTGTTGCCCACAGCCAACACTGCAGCAAGCAAGATAAGTTTTGGCAGTGCGGGCATTGTCTCGGGTAGCGGCGCTGTTTCAACTCCTTTAGTTGCCAAAAATCCTGACACTTTCTACTACCTCACACTTGAGGCCATTAGTGTTGGAGAGAAGAGGTTGGCCTACAAAACAAAGTCACCAGATTGCGAGAAAGCTGCCGTAGCTGCCAATGAGGGCAATATTATCATCGACTCTGGAACTACATTGACTCTCCTTCCACCTGGATTTCATGACGATTTGGTGTCGGCGTTGGAGACCGCAATCAACGCCGAGCGGGTTAGTGACCCAAGGGGGATCCTGAGCCTTTGTTTTAAAAGCAAAAGTGATGATATTGGTGTTCCTGTTATAACTGTCCATTTTAGTGGAGGTGCTGATGTGAAGTTGCAGGCGTTGAACACATTTGCTAGAATGGATGATGATATGATTTGCTTCACAATGATACCATCTAGTGATGTGGCCATATTTGGGAACTTGGCTCAGATGAACTTCCTGGTGGGTTATGACCTTGAGGAAAGAAGTGTGTCCTTCAAGCCAACTGATTGCACCAAGCATTGA

Protein Analysis

458

Amino Acids

48.69

Weight (kDa)

5.94

Isoelectric Point (pI)

33.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 218, 278, 1166
AccB1I GGYRCC 1 cut(s) 506
AccBSI CCGCTC 1 cut(s) 1093
AccII CGCG 1 cut(s) 290
AclI AACGTT 1 cut(s) 309
AclWI GGATC 5 cut(s) 186, 422, 616, 1108, 1121
AcoI YGGCCR 3 cut(s) 252, 619, 1275
AcsI RAATTY 1 cut(s) 767
AcvI CACGTG 2 cut(s) 203, 534
AfaI GTAC 3 cut(s) 143, 449, 542
AfiI CCNNNNNNNGG 4 cut(s) 289, 290, 762, 1284
AflIII ACRYGT 4 cut(s) 200, 202, 531, 533
AgsI TTSAA 4 cut(s) 406, 861, 1213, 1348
AjnI CCWGG 3 cut(s) 339, 1039, 1308
AjuI GAANNNNNNNTTGG 2 cut(s) 217, 249
AluBI AGCT 7 cut(s) 14, 350, 546, 587, 742, 974, 983
AluI AGCT 7 cut(s) 14, 350, 546, 587, 742, 974, 983
Alw26I GTCTC 4 cut(s) 552, 587, 844, 1067
AlwI GGATC 5 cut(s) 186, 422, 616, 1108, 1121
AlwNI CAGNNNCTG 1 cut(s) 477
Ama87I CYCGRG 1 cut(s) 841
AoxI GGCC 7 cut(s) 252, 619, 706, 718, 912, 939, 1275
ApeKI GCWGC 7 cut(s) 11, 14, 87, 360, 803, 974, 983
ApoI RAATTY 1 cut(s) 767
AspLEI GCGC 2 cut(s) 290, 854
AspS9I GGNCC 1 cut(s) 719
AsuC2I CCSGG 1 cut(s) 691
AsuHPI GGTGA 1 cut(s) 948
AvaI CYCGRG 1 cut(s) 841
BalI TGGCCA 1 cut(s) 1277
BamHI GGATCC 1 cut(s) 1113
BanI GGYRCC 1 cut(s) 506
BbrPI CACGTG 2 cut(s) 203, 534
BbvI GCAGC 6 cut(s) 23, 99, 372, 815, 961, 970
BccI CCATC 2 cut(s) 216, 1270
BceAI ACGGC 2 cut(s) 535, 962
BcgI CGANNNNNNTGC 4 cut(s) 469, 503, 956, 990
BciT130I CCWGG 3 cut(s) 341, 1041, 1310
BcnI CCSGG 1 cut(s) 691
BcoDI GTCTC 4 cut(s) 552, 587, 844, 1067
BfaI CTAG 4 cut(s) 573, 584, 1224, 1266
BfmI CTRYAG 1 cut(s) 801
BfoI RGCGCY 1 cut(s) 855
BglI GCCNNNNNGGC 1 cut(s) 714
Bme1390I CCNGG 4 cut(s) 341, 691, 1041, 1310
BmeT110I CYCGRG 1 cut(s) 841
BmgT120I GGNCC 1 cut(s) 719
BmiI GGNNCC 3 cut(s) 508, 721, 1115
BmrFI CCNGG 4 cut(s) 341, 691, 1041, 1310
BoxI GACNNNNGTC 1 cut(s) 203
Bpu10I CCTNAGC 1 cut(s) 1118
BpuEI CTTGAG 3 cut(s) 611, 929, 1346
BpuMI CCSGG 1 cut(s) 691
Bsa29I ATCGAT 1 cut(s) 550
BsaAI YACGTR 2 cut(s) 203, 534
BsaI GGTCTC 3 cut(s) 552, 587, 1067
BsaJI CCNNGG 4 cut(s) 91, 340, 709, 1106
BsaXI ACNNNNNCTCC 4 cut(s) 107, 134, 137, 164
Bsc4I CCNNNNNNNGG 4 cut(s) 289, 290, 762, 1284
Bse118I RCCGGY 1 cut(s) 356
Bse1I ACTGG 3 cut(s) 329, 466, 471
BseBI CCWGG 3 cut(s) 341, 1041, 1310
BseCI ATCGAT 1 cut(s) 550
BseDI CCNNGG 4 cut(s) 91, 340, 709, 1106
BseGI GGATG 2 cut(s) 111, 1237
BseLI CCNNNNNNNGG 4 cut(s) 289, 290, 762, 1284
BseMII CTCAG 3 cut(s) 752, 1109, 1310
BseNI ACTGG 3 cut(s) 329, 466, 471
BseX3I CGGCCG 1 cut(s) 619
BseXI GCAGC 6 cut(s) 23, 99, 372, 815, 961, 970
BsgI GTGCAG 1 cut(s) 463
Bsh1236I CGCG 1 cut(s) 290
Bsh1285I CGRYCG 1 cut(s) 622
BshFI GGCC 7 cut(s) 254, 621, 708, 720, 914, 941, 1277
BshNI GGYRCC 1 cut(s) 506
BshVI ATCGAT 1 cut(s) 550
BsiEI CGRYCG 1 cut(s) 622
BsiHKCI CYCGRG 1 cut(s) 841
BsiSI CCGG 3 cut(s) 357, 618, 690
BslFI GGGAC 1 cut(s) 142
BslI CCNNNNNNNGG 4 cut(s) 289, 290, 762, 1284
BsmAI GTCTC 4 cut(s) 552, 587, 844, 1067
BsmFI GGGAC 1 cut(s) 142
BsnI GGCC 7 cut(s) 254, 621, 708, 720, 914, 941, 1277
Bso31I GGTCTC 3 cut(s) 552, 587, 1067
BsoBI CYCGRG 1 cut(s) 841
Bsp1407I TGTACA 1 cut(s) 141
Bsp143I GATC 8 cut(s) 106, 166, 191, 364, 427, 523, 608, 1113
Bsp19I CCATGG 1 cut(s) 91
BspANI GGCC 7 cut(s) 254, 621, 708, 720, 914, 941, 1277
BspCNI CTCAG 3 cut(s) 751, 1110, 1309
BspDI ATCGAT 1 cut(s) 550
BspFNI CGCG 1 cut(s) 290
BspHI TCATGA 2 cut(s) 303, 1048
BspLI GGNNCC 3 cut(s) 508, 721, 1115
BspMAI CTGCAG 1 cut(s) 805
BspPI GGATC 5 cut(s) 186, 422, 616, 1108, 1121
BspT107I GGYRCC 1 cut(s) 506
BspTNI GGTCTC 3 cut(s) 552, 587, 1067
BsrBI CCGCTC 1 cut(s) 1093
BsrFI RCCGGY 1 cut(s) 356
BsrGI TGTACA 1 cut(s) 141
BsrI ACTGG 3 cut(s) 329, 466, 471
BssAI RCCGGY 1 cut(s) 356
BssECI CCNNGG 4 cut(s) 91, 340, 709, 1106
BssMI GATC 8 cut(s) 106, 166, 191, 364, 427, 523, 608, 1113
BssT1I CCWWGG 2 cut(s) 91, 1106
Bst2UI CCWGG 3 cut(s) 341, 1041, 1310
Bst4CI ACNGT 3 cut(s) 119, 563, 1171
Bst6I CTCTTC 1 cut(s) 926
BstAPI GCANNNNNTGC 1 cut(s) 390
BstAUI TGTACA 1 cut(s) 141
BstBAI YACGTR 2 cut(s) 203, 534
BstC8I GCNNGC 8 cut(s) 75, 85, 292, 386, 395, 808, 832, 1206
BstDEI CTNAG 4 cut(s) 30, 738, 1118, 1296
BstDSI CCRYGG 1 cut(s) 91
BstF5I GGATG 2 cut(s) 111, 1237
BstFNI CGCG 1 cut(s) 290
BstH2I RGCGCY 1 cut(s) 855
BstHHI GCGC 2 cut(s) 290, 854
BstKTI GATC 8 cut(s) 109, 169, 194, 367, 430, 526, 611, 1116
BstMAI GTCTC 4 cut(s) 552, 587, 844, 1067
BstMBI GATC 8 cut(s) 106, 166, 191, 364, 427, 523, 608, 1113
BstMCI CGRYCG 1 cut(s) 622
BstNI CCWGG 3 cut(s) 341, 1041, 1310
BstNSI RCATGY 1 cut(s) 63
BstPAI GACNNNNGTC 1 cut(s) 203
BstSCI CCNGG 4 cut(s) 339, 689, 1039, 1308
BstSFI CTRYAG 1 cut(s) 801
BstUI CGCG 1 cut(s) 290
BstV1I GCAGC 6 cut(s) 23, 99, 372, 815, 961, 970
BstX2I RGATCY 2 cut(s) 608, 1113
BstXI CCANNNNNNTGG 1 cut(s) 1181
BstYI RGATCY 2 cut(s) 608, 1113
BstZI CGGCCG 1 cut(s) 619
Bsu15I ATCGAT 1 cut(s) 550
BsuRI GGCC 7 cut(s) 254, 621, 708, 720, 914, 941, 1277
BsuTUI ATCGAT 1 cut(s) 550
BtgI CCRYGG 1 cut(s) 91
BtsCI GGATG 2 cut(s) 111, 1237
BtsI GCAGTG 4 cut(s) 99, 404, 798, 832
BtsIMutI CAGTG 4 cut(s) 99, 404, 798, 832
Cac8I GCNNGC 8 cut(s) 75, 85, 292, 386, 395, 808, 832, 1206
CaiI CAGNNNCTG 1 cut(s) 477
CciI TCATGA 2 cut(s) 303, 1048
CfoI GCGC 2 cut(s) 290, 854
Cfr10I RCCGGY 1 cut(s) 356
Cfr13I GGNCC 1 cut(s) 719
ClaI ATCGAT 1 cut(s) 550
Csp6I GTAC 3 cut(s) 142, 448, 541
CviAII CATG 8 cut(s) 60, 92, 154, 304, 390, 462, 662, 1049
CviQI GTAC 3 cut(s) 142, 448, 541
DdeI CTNAG 4 cut(s) 30, 738, 1118, 1296
DpnI GATC 8 cut(s) 108, 168, 193, 366, 429, 525, 610, 1115
DpnII GATC 8 cut(s) 106, 166, 191, 364, 427, 523, 608, 1113
DraI TTTAAA 1 cut(s) 1132
EaeI YGGCCR 3 cut(s) 252, 619, 1275
EagI CGGCCG 1 cut(s) 619
Eam1104I CTCTTC 1 cut(s) 926
EarI CTCTTC 1 cut(s) 926
EclXI CGGCCG 1 cut(s) 619
Eco130I CCWWGG 2 cut(s) 91, 1106
Eco31I GGTCTC 3 cut(s) 552, 587, 1067
Eco52I CGGCCG 1 cut(s) 619
Eco72I CACGTG 2 cut(s) 203, 534
Eco88I CYCGRG 1 cut(s) 841
EcoRII CCWGG 3 cut(s) 339, 1039, 1308
EcoT14I CCWWGG 2 cut(s) 91, 1106
ErhI CCWWGG 2 cut(s) 91, 1106
FaeI CATG 8 cut(s) 63, 95, 157, 307, 393, 465, 665, 1052
FaqI GGGAC 1 cut(s) 142
FatI CATG 8 cut(s) 59, 91, 153, 303, 389, 461, 661, 1048
FauI CCCGC 4 cut(s) 283, 423, 823, 1086
FokI GGATG 2 cut(s) 98, 1244
FspBI CTAG 4 cut(s) 573, 584, 1224, 1266
GlaI GCGC 2 cut(s) 289, 853
HaeII RGCGCY 1 cut(s) 855
HaeIII GGCC 7 cut(s) 254, 621, 708, 720, 914, 941, 1277
HapII CCGG 3 cut(s) 357, 618, 690
HhaI GCGC 2 cut(s) 290, 854
Hin1II CATG 8 cut(s) 63, 95, 157, 307, 393, 465, 665, 1052
Hin6I GCGC 2 cut(s) 288, 852
HinP1I GCGC 2 cut(s) 288, 852
HinfI GANTC 4 cut(s) 122, 686, 1010, 1027
HpaII CCGG 3 cut(s) 357, 618, 690
HphI GGTGA 1 cut(s) 948
Hpy166II GTNNAC 2 cut(s) 570, 659
Hpy188I TCNGA 2 cut(s) 713, 1299
Hpy188III TCNNGA 9 cut(s) 304, 488, 527, 590, 745, 884, 1014, 1049, 1117
Hpy8I GTNNAC 2 cut(s) 570, 659
Hpy99I CGWCG 1 cut(s) 192
HpyAV CCTTC 2 cut(s) 1043, 1354
HpyCH4III ACNGT 3 cut(s) 119, 563, 1171
HpyCH4IV ACGT 4 cut(s) 202, 309, 446, 533
HpyCH4V TGCA 7 cut(s) 59, 384, 393, 480, 803, 1204, 1362
HpyF3I CTNAG 4 cut(s) 30, 738, 1118, 1296
HpySE526I ACGT 4 cut(s) 202, 309, 446, 533
Hsp92II CATG 8 cut(s) 63, 95, 157, 307, 393, 465, 665, 1052
HspAI GCGC 2 cut(s) 288, 852
Kzo9I GATC 8 cut(s) 106, 166, 191, 364, 427, 523, 608, 1113
LmnI GCTCC 1 cut(s) 22
Lsp1109I GCAGC 6 cut(s) 23, 99, 372, 815, 961, 970
MaeI CTAG 4 cut(s) 573, 584, 1224, 1266
MaeII ACGT 4 cut(s) 202, 309, 446, 533
MaeIII GTNAC 4 cut(s) 119, 196, 954, 1100
MalI GATC 8 cut(s) 108, 168, 193, 366, 429, 525, 610, 1115
MbiI CCGCTC 1 cut(s) 1093
MboI GATC 8 cut(s) 106, 166, 191, 364, 427, 523, 608, 1113
MboII GAAGA 3 cut(s) 237, 503, 943
MflI RGATCY 2 cut(s) 608, 1113
MlsI TGGCCA 1 cut(s) 1277
MluCI AATT 4 cut(s) 145, 513, 749, 767
MluNI TGGCCA 1 cut(s) 1277
MlyI GAGTC 4 cut(s) 116, 695, 1004, 1021
MmeI TCCRAC 2 cut(s) 904, 1050
Mox20I TGGCCA 1 cut(s) 1277
MscI TGGCCA 1 cut(s) 1277
MseI TTAA 2 cut(s) 516, 1131
MslI CAYNNNNRTG 2 cut(s) 666, 1179
Msp20I TGGCCA 1 cut(s) 1277
MspA1I CMGCKG 1 cut(s) 14
MspI CCGG 3 cut(s) 357, 618, 690
MspR9I CCNGG 4 cut(s) 341, 691, 1041, 1310
MvaI CCWGG 3 cut(s) 341, 1041, 1310
MvnI CGCG 1 cut(s) 290
NciI CCSGG 1 cut(s) 691
NcoI CCATGG 1 cut(s) 91
NdeII GATC 8 cut(s) 106, 166, 191, 364, 427, 523, 608, 1113
NlaIII CATG 8 cut(s) 63, 95, 157, 307, 393, 465, 665, 1052
NlaIV GGNNCC 3 cut(s) 508, 721, 1115
NmeAIII GCCGAG 1 cut(s) 1114
NmuCI GTSAC 4 cut(s) 119, 196, 954, 1100
NspI RCATGY 1 cut(s) 63
PagI TCATGA 2 cut(s) 303, 1048
PcsI WCGNNNNNNNCGW 1 cut(s) 525
PleI GAGTC 4 cut(s) 116, 694, 1004, 1021
PmaCI CACGTG 2 cut(s) 203, 534
PmlI CACGTG 2 cut(s) 203, 534
PpsI GAGTC 4 cut(s) 116, 694, 1004, 1021
Ppu21I YACGTR 2 cut(s) 203, 534
PshAI GACNNNNGTC 1 cut(s) 203
PsiI TTATAA 3 cut(s) 218, 278, 1166
Psp1406I AACGTT 1 cut(s) 309
Psp6I CCWGG 3 cut(s) 339, 1039, 1308
PspCI CACGTG 2 cut(s) 203, 534
PspGI CCWGG 3 cut(s) 339, 1039, 1308
PspN4I GGNNCC 3 cut(s) 508, 721, 1115
PspPI GGNCC 1 cut(s) 719
PstI CTGCAG 1 cut(s) 805
PstNI CAGNNNCTG 1 cut(s) 477
PsuI RGATCY 2 cut(s) 608, 1113
PvuII CAGCTG 1 cut(s) 14
RsaI GTAC 3 cut(s) 143, 449, 542
RsaNI GTAC 3 cut(s) 142, 448, 541
RseI CAYNNNNRTG 2 cut(s) 666, 1179
SaqAI TTAA 2 cut(s) 516, 1131
Sau3AI GATC 8 cut(s) 106, 166, 191, 364, 427, 523, 608, 1113
Sau96I GGNCC 1 cut(s) 719
SchI GAGTC 4 cut(s) 116, 695, 1004, 1021
ScrFI CCNGG 4 cut(s) 341, 691, 1041, 1310
SfcI CTRYAG 1 cut(s) 801
SmiMI CAYNNNNRTG 2 cut(s) 666, 1179
SmlI CTYRAG 3 cut(s) 590, 908, 1325
SmoI CTYRAG 3 cut(s) 590, 908, 1325
Sse9I AATT 4 cut(s) 145, 513, 749, 767
SspI AATATT 1 cut(s) 1000
SspMI CTAG 4 cut(s) 573, 584, 1224, 1266
StyD4I CCNGG 4 cut(s) 339, 689, 1039, 1308
StyI CCWWGG 2 cut(s) 91, 1106
TaaI ACNGT 3 cut(s) 119, 563, 1171
TaiI ACGT 4 cut(s) 205, 312, 449, 536
TaqI TCGA 5 cut(s) 190, 314, 489, 550, 1008
TasI AATT 4 cut(s) 145, 513, 749, 767
TatI WGTACW 2 cut(s) 141, 540
TauI GCSGC 6 cut(s) 257, 328, 500, 624, 720, 852
Tru1I TTAA 2 cut(s) 516, 1131
Tru9I TTAA 2 cut(s) 516, 1131
TscAI CASTG 4 cut(s) 106, 404, 805, 832
TseFI GTSAC 4 cut(s) 119, 196, 954, 1100
TseI GCWGC 7 cut(s) 11, 14, 87, 360, 803, 974, 983
Tsp45I GTSAC 4 cut(s) 119, 196, 954, 1100
TspDTI ATGAA 6 cut(s) 55, 320, 678, 762, 1037, 1316
TspGWI ACGGA 4 cut(s) 176, 184, 570, 774
TspRI CASTG 4 cut(s) 106, 404, 805, 832
XapI RAATTY 1 cut(s) 767
XceI RCATGY 1 cut(s) 63
XspI CTAG 4 cut(s) 573, 584, 1224, 1266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.