Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0006976

Physical Location & Seq

Genomic Coordinates Reverse (-)

1682688 .. 1684082

Gene Structure 1395 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g01570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1395 bp

ATGGCGACCTTCGCTCTTTCTGCTTGCAATATGATTCATTTTCCACTTGCCCTACTAGCATATTTCACTTTGCTCACGCTAGCCAATAGCCACGGTTTCACTGCCGATCTCATACACCGTGATTCTCCGCTCTCTCCCTTGTACAATTCATCCGTCTCTCGTTACGATCGCTTGCATAATGCGTTTCGCCGTTCTGTCACTCGTGCCAATCACTTCGTCAAGCCAATAATCACCTCATTATCGTCGTCGTCATCAGAAAATATCCAGTCCAGAATAATATCAAGTGCTGGAGAATACCTAATGAACGTATCAATTGGGACCCCACCAGTTGAAGTTCTCGGAATAGCTGACACAGGCAGTGATCTCATCTGGACTCAATGCAAGCCATGCAAGCAATGCTTCAACCAAAACCCTCCTCTCTTCGATCCCAAGAAATCGTCAACCTACCGCTCCATCCCGTGTCAGTCCAATTCATGTACTTATCTCGAAGAAGCCTCCTGCAGCACCCAAGACAACGAAGGTCATGAAACGTGTGACTATAGCTATCGTTACGGAGACCGCTCTTTCACCAGAGGGACTCTAGCTGTTGAGACCTTCACCGTTGGCTCAACTTCTGGCCGTCCAGTTTCACTCCCGAAAATTCTCTTCGGTTGTGGACATCAAAATGGTGGCACATTTGATGAGTCCGGTTCTGGCTTGATTGGCCTCGGAGGCGGCCCTCTTTCCCTCGTTTCTCAGCTGACTAAATCGACCAATGGAGGGAAATTTTCCTACTGTTTGGTGCCTCTGGCATCGAATAGTAAGAATCCAAACAATAACTTGGCGAGCAAGATAAGTTTTGGCAGTGCTGGCATTGTTTCAGGTGCCGGTGCTGTTTCAACGCCTATGGTTGCTAAACAGCCCGACACTTTCTATTACCTCACCCTCGAGGCCATTAGCGTTGGAGAGAAGTGGTTGGCCTACAAATCCAAATCATCACCGAACTGCACGGATGACGTCACTGTTTCTGCCAATGAGGGCAACATTATCATCGATTCGGGGACTACTTTGACGCTCCTTCCACCTGGATTTTACGAGGATTTGGAATCGGCGTTGGAGGTTGCCATTAACGCAGAGAGGGTTAGTGATCCGAAGGGGATTCTGAGCCTTTGCTTCCGAAGCGAAAGCGATGACATTGGTGTTCCGGTCATAACTGCACATTTCAAGGGTGCGGATGTAAAGTTGCAGGCAGTGAACACATTTGCCAGAATCGAGGACGATTTGGTTTGCTTGACAATGATACCGTCGAATGACGTGGCGATATTTGGTAACTTGGCTCAAATCAACTTCCTGGTGGGATATGACCTTGAAGAAAGAACTGTGTCGTTTAAGCCGACTGATTGCACCGAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04071 ko04138 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04138 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

465

Amino Acids

49.91

Weight (kDa)

5.33

Isoelectric Point (pI)

39.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asp	PF00026	98 - 151	1.7e-06	Eukaryotic aspartyl protease
TAXi_N	PF14543	99 - 269	4.4e-55	Xylanase inhibitor N-terminal
Asp	PF00026	154 - 456	7.1e-11	Eukaryotic aspartyl protease
TAXi_C	PF14541	305 - 457	2.7e-22	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31450 AT2G35615
fragaria_vesca	FvH4_1g21300 FvH4_5g24370
malus_domestica	MD06G1021800.v1.1 MD16G1288400.v1.1
prunus_persica	Prupe.5G017100_v2.0.a1
pyrus_communis	pycom06g01570
rosa_chinensis	RchiOBHm_Chr2g0115131 RchiOBHm_Chr7g0214751
rosa_laevigata	RLG00000002724 RLG00000018161
rosa_roxburghii	Rroxscaffold_2G00130610 Rroxscaffold_3G00245120
rosa_rugosa	Rorug02G0193900
rosa_samantha	Rh2AG252400 Rh2BG261900 Rh2CG256900 Rh2DG260600 Rh7AG283700 Rh7BG274400 Rh7CG303100 Rh7DG287100
rosa_wichuraiana	Rw2G019680 Rw7G024190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	999
AbsI	CCTCGAGG	1 cut(s)	926
AccB1I	GGYRCC	2 cut(s)	781, 863
AccBSI	CCGCTC	3 cut(s)	130, 450, 561
AciI	CCGC	5 cut(s)	128, 448, 559, 714, 1211
AclWI	GGATC	2 cut(s)	419, 1121
AcoI	YGGCCR	1 cut(s)	616
AcsI	RAATTY	2 cut(s)	639, 764
AcyI	GRCGYC	1 cut(s)	996
AfaI	GTAC	2 cut(s)	143, 478
AfiI	CCNNNNNNNGG	1 cut(s)	759
AflIII	ACRYGT	1 cut(s)	530
AgsI	TTSAA	5 cut(s)	332, 403, 879, 1204, 1349
AjiI	CACGTC	1 cut(s)	1294
AjnI	CCWGG	2 cut(s)	1063, 1329
AluBI	AGCT	4 cut(s)	347, 543, 584, 739
AluI	AGCT	4 cut(s)	347, 543, 584, 739
Alw26I	GTCTC	3 cut(s)	160, 549, 584
AlwI	GGATC	2 cut(s)	419, 1121
Ama87I	CYCGRG	1 cut(s)	926
AoxI	GGCC	5 cut(s)	616, 703, 715, 930, 957
ApeKI	GCWGC	1 cut(s)	501
ApoI	RAATTY	2 cut(s)	639, 764
AspS9I	GGNCC	2 cut(s)	318, 716
AsuHPI	GGTGA	5 cut(s)	223, 559, 589, 913, 969
AsuNHI	GCTAGC	1 cut(s)	79
AvaI	CYCGRG	1 cut(s)	926
AvaII	GGWCC	1 cut(s)	318
BanI	GGYRCC	2 cut(s)	781, 863
BauI	CACGAG	1 cut(s)	201
BbvI	GCAGC	1 cut(s)	513
BccI	CCATC	1 cut(s)	461
BceAI	ACGGC	2 cut(s)	174, 603
BciT130I	CCWGG	2 cut(s)	1065, 1331
BcoDI	GTCTC	3 cut(s)	160, 549, 584
BfaI	CTAG	3 cut(s)	56, 80, 581
BfmI	CTRYAG	2 cut(s)	499, 538
BglI	GCCNNNNNGGC	1 cut(s)	711
BisI	GCNGC	2 cut(s)	502, 715
BlsI	GCNGC	2 cut(s)	503, 716
Bme1390I	CCNGG	2 cut(s)	1065, 1331
Bme18I	GGWCC	1 cut(s)	318
BmeT110I	CYCGRG	1 cut(s)	926
BmgBI	CACGTC	1 cut(s)	1294
BmgT120I	GGNCC	2 cut(s)	318, 716
BmiI	GGNNCC	4 cut(s)	319, 320, 783, 865
BmrFI	CCNGG	2 cut(s)	1065, 1331
BmsI	GCATC	1 cut(s)	800
BmtI	GCTAGC	1 cut(s)	83
BpmI	CTGGAG	1 cut(s)	309
Bsa29I	ATCGAT	1 cut(s)	1032
BsaHI	GRCGYC	1 cut(s)	996
BsaI	GGTCTC	2 cut(s)	549, 584
BsaJI	CCNNGG	2 cut(s)	91, 706
BsaWI	WCCGGW	2 cut(s)	686, 1183
Bsc4I	CCNNNNNNNGG	1 cut(s)	759
Bse118I	RCCGGY	1 cut(s)	866
Bse1I	ACTGG	3 cut(s)	265, 326, 623
Bse3DI	GCAATG	1 cut(s)	401
BseBI	CCWGG	2 cut(s)	1065, 1331
BseCI	ATCGAT	1 cut(s)	1032
BseDI	CCNNGG	2 cut(s)	91, 706
BseGI	GGATG	4 cut(s)	149, 453, 997, 1219
BseLI	CCNNNNNNNGG	1 cut(s)	759
BseMI	GCAATG	1 cut(s)	401
BseMII	CTCAG	2 cut(s)	749, 1133
BseNI	ACTGG	3 cut(s)	265, 326, 623
BseRI	GAGGAG	1 cut(s)	405
BseXI	GCAGC	1 cut(s)	513
BsgI	GTGCAG	2 cut(s)	970, 1179
Bsh1285I	CGRYCG	1 cut(s)	169
BshFI	GGCC	5 cut(s)	618, 705, 717, 932, 959
BshNI	GGYRCC	2 cut(s)	781, 863
BshVI	ATCGAT	1 cut(s)	1032
BsiEI	CGRYCG	1 cut(s)	169
BsiHKCI	CYCGRG	1 cut(s)	926
BsiSI	CCGG	3 cut(s)	687, 867, 1184
BslFI	GGGAC	3 cut(s)	331, 589, 1054
BslI	CCNNNNNNNGG	1 cut(s)	759
BsmAI	GTCTC	3 cut(s)	160, 549, 584
BsmBI	CGTCTC	1 cut(s)	160
BsmFI	GGGAC	3 cut(s)	331, 589, 1054
BsnI	GGCC	5 cut(s)	618, 705, 717, 932, 959
Bso31I	GGTCTC	2 cut(s)	549, 584
BsoBI	CYCGRG	1 cut(s)	926
Bsp1407I	TGTACA	1 cut(s)	141
Bsp143I	GATC	5 cut(s)	106, 166, 361, 424, 1126
BspACI	CCGC	5 cut(s)	128, 448, 559, 714, 1211
BspANI	GGCC	5 cut(s)	618, 705, 717, 932, 959
BspCNI	CTCAG	2 cut(s)	748, 1134
BspDI	ATCGAT	1 cut(s)	1032
BspHI	TCATGA	1 cut(s)	523
BspLI	GGNNCC	4 cut(s)	319, 320, 783, 865
BspMAI	CTGCAG	1 cut(s)	503
BspOI	GCTAGC	1 cut(s)	83
BspPI	GGATC	2 cut(s)	419, 1121
BspT107I	GGYRCC	2 cut(s)	781, 863
BspTNI	GGTCTC	2 cut(s)	549, 584
BsrBI	CCGCTC	3 cut(s)	130, 450, 561
BsrDI	GCAATG	1 cut(s)	401
BsrFI	RCCGGY	1 cut(s)	866
BsrGI	TGTACA	1 cut(s)	141
BsrI	ACTGG	3 cut(s)	265, 326, 623
BssAI	RCCGGY	1 cut(s)	866
BssECI	CCNNGG	2 cut(s)	91, 706
BssMI	GATC	5 cut(s)	106, 166, 361, 424, 1126
BssNI	GRCGYC	1 cut(s)	996
BssSI	CACGAG	1 cut(s)	201
Bst2BI	CACGAG	1 cut(s)	201
Bst2UI	CCWGG	2 cut(s)	1065, 1331
Bst4CI	ACNGT	7 cut(s)	95, 119, 601, 776, 1003, 1284, 1360
Bst6I	CTCTTC	2 cut(s)	425, 650
BstACI	GRCGYC	1 cut(s)	996
BstAPI	GCANNNNNTGC	2 cut(s)	387, 396
BstAUI	TGTACA	1 cut(s)	141
BstC8I	GCNNGC	8 cut(s)	25, 81, 173, 383, 392, 826, 850, 1227
BstDEI	CTNAG	2 cut(s)	735, 1142
BstDSI	CCRYGG	1 cut(s)	91
BstF5I	GGATG	4 cut(s)	149, 453, 997, 1219
BstKTI	GATC	5 cut(s)	109, 169, 364, 427, 1129
BstMAI	GTCTC	3 cut(s)	160, 549, 584
BstMBI	GATC	5 cut(s)	106, 166, 361, 424, 1126
BstMCI	CGRYCG	1 cut(s)	169
BstNI	CCWGG	2 cut(s)	1065, 1331
BstSCI	CCNGG	2 cut(s)	1063, 1329
BstSFI	CTRYAG	2 cut(s)	499, 538
BstV1I	GCAGC	1 cut(s)	513
Bsu15I	ATCGAT	1 cut(s)	1032
BsuRI	GGCC	5 cut(s)	618, 705, 717, 932, 959
BsuTUI	ATCGAT	1 cut(s)	1032
BtgI	CCRYGG	1 cut(s)	91
BtgZI	GCGATG	1 cut(s)	1182
BtrI	CACGTC	1 cut(s)	1294
BtsCI	GGATG	4 cut(s)	149, 453, 997, 1219
BtsI	GCAGTG	4 cut(s)	99, 364, 850, 1236
BtsIMutI	CAGTG	5 cut(s)	99, 364, 850, 999, 1236
Cac8I	GCNNGC	8 cut(s)	25, 81, 173, 383, 392, 826, 850, 1227
CciI	TCATGA	1 cut(s)	523
Cfr10I	RCCGGY	1 cut(s)	866
Cfr13I	GGNCC	2 cut(s)	318, 716
ClaI	ATCGAT	1 cut(s)	1032
CseI	GACGC	1 cut(s)	1060
Csp6I	GTAC	2 cut(s)	142, 477
CviAII	CATG	3 cut(s)	387, 474, 524
CviQI	GTAC	2 cut(s)	142, 477
DdeI	CTNAG	2 cut(s)	735, 1142
DpnI	GATC	5 cut(s)	108, 168, 363, 426, 1128
DpnII	GATC	5 cut(s)	106, 166, 361, 424, 1126
EaeI	YGGCCR	1 cut(s)	616
Eam1104I	CTCTTC	2 cut(s)	425, 650
EarI	CTCTTC	2 cut(s)	425, 650
Eco31I	GGTCTC	2 cut(s)	549, 584
Eco47I	GGWCC	1 cut(s)	318
Eco88I	CYCGRG	1 cut(s)	926
EcoO109I	RGGNCCY	1 cut(s)	318
EcoRII	CCWGG	2 cut(s)	1063, 1329
Esp3I	CGTCTC	1 cut(s)	160
FaeI	CATG	3 cut(s)	390, 477, 527
FalI	AAGNNNNNCTT	2 cut(s)	383, 415
FaqI	GGGAC	3 cut(s)	331, 589, 1054
FatI	CATG	3 cut(s)	386, 473, 523
Fnu4HI	GCNGC	2 cut(s)	502, 715
FokI	GGATG	4 cut(s)	136, 440, 1004, 1226
Fsp4HI	GCNGC	2 cut(s)	502, 715
FspBI	CTAG	3 cut(s)	56, 80, 581
GluI	GCNGC	2 cut(s)	502, 715
GsuI	CTGGAG	1 cut(s)	309
HaeIII	GGCC	5 cut(s)	618, 705, 717, 932, 959
HapII	CCGG	3 cut(s)	687, 867, 1184
HgaI	GACGC	1 cut(s)	1060
Hin1I	GRCGYC	1 cut(s)	996
Hin1II	CATG	3 cut(s)	390, 477, 527
HincII	GTYRAC	1 cut(s)	441
HindII	GTYRAC	1 cut(s)	441
HpaII	CCGG	3 cut(s)	687, 867, 1184
HphI	GGTGA	5 cut(s)	223, 559, 589, 913, 969
Hpy166II	GTNNAC	3 cut(s)	441, 656, 1234
Hpy188I	TCNGA	6 cut(s)	256, 341, 710, 1131, 1143, 1157
Hpy188III	TCNNGA	5 cut(s)	270, 370, 485, 524, 634
Hpy8I	GTNNAC	3 cut(s)	441, 656, 1234
Hpy99I	CGWCG	3 cut(s)	247, 250, 1288
HpyAV	CCTTC	5 cut(s)	19, 512, 604, 1067, 1126
HpyCH4III	ACNGT	7 cut(s)	95, 119, 601, 776, 1003, 1284, 1360
HpyCH4IV	ACGT	4 cut(s)	306, 530, 996, 1293
HpyCH4V	TGCA	9 cut(s)	27, 175, 381, 390, 501, 987, 1196, 1225, 1383
HpyF3I	CTNAG	2 cut(s)	735, 1142
HpySE526I	ACGT	4 cut(s)	306, 530, 996, 1293
Hsp92I	GRCGYC	1 cut(s)	996
Hsp92II	CATG	3 cut(s)	390, 477, 527
KflI	GGGWCCC	1 cut(s)	318
Kzo9I	GATC	5 cut(s)	106, 166, 361, 424, 1126
LmnI	GCTCC	2 cut(s)	455, 1059
Lsp1109I	GCAGC	1 cut(s)	513
LweI	GCATC	1 cut(s)	800
MaeI	CTAG	3 cut(s)	56, 80, 581
MaeII	ACGT	4 cut(s)	306, 530, 996, 1293
MaeIII	GTNAC	6 cut(s)	161, 196, 533, 548, 997, 1307
MalI	GATC	5 cut(s)	108, 168, 363, 426, 1128
MbiI	CCGCTC	3 cut(s)	130, 450, 561
MboI	GATC	5 cut(s)	106, 166, 361, 424, 1126
MboII	GAAGA	4 cut(s)	412, 500, 637, 1361
MfeI	CAATTG	1 cut(s)	312
MluCI	AATT	5 cut(s)	145, 312, 469, 639, 764
MlyI	GAGTC	3 cut(s)	367, 571, 692
MmeI	TCCRAC	2 cut(s)	922, 1074
MseI	TTAA	2 cut(s)	1107, 1368
MslI	CAYNNNNRTG	1 cut(s)	663
MspA1I	CMGCKG	1 cut(s)	739
MspI	CCGG	3 cut(s)	687, 867, 1184
MspR9I	CCNGG	2 cut(s)	1065, 1331
MunI	CAATTG	1 cut(s)	312
MvaI	CCWGG	2 cut(s)	1065, 1331
NdeII	GATC	5 cut(s)	106, 166, 361, 424, 1126
NheI	GCTAGC	1 cut(s)	79
NlaIII	CATG	3 cut(s)	390, 477, 527
NlaIV	GGNNCC	4 cut(s)	319, 320, 783, 865
NmuCI	GTSAC	3 cut(s)	196, 533, 997
PaeR7I	CTCGAG	1 cut(s)	926
PagI	TCATGA	1 cut(s)	523
PcsI	WCGNNNNNNNCGW	1 cut(s)	1370
PfeI	GAWTC	7 cut(s)	34, 122, 805, 1034, 1085, 1138, 1248
PkrI	GCNGC	2 cut(s)	503, 716
Ple19I	CGATCG	1 cut(s)	169
PleI	GAGTC	3 cut(s)	367, 571, 691
PpsI	GAGTC	3 cut(s)	367, 571, 691
PpuMI	RGGWCCY	1 cut(s)	318
Psp5II	RGGWCCY	1 cut(s)	318
Psp6I	CCWGG	2 cut(s)	1063, 1329
PspGI	CCWGG	2 cut(s)	1063, 1329
PspN4I	GGNNCC	4 cut(s)	319, 320, 783, 865
PspPI	GGNCC	2 cut(s)	318, 716
PspPPI	RGGWCCY	1 cut(s)	318
PspXI	VCTCGAGB	1 cut(s)	926
PstI	CTGCAG	1 cut(s)	503
PvuI	CGATCG	1 cut(s)	169
PvuII	CAGCTG	1 cut(s)	739
RsaI	GTAC	2 cut(s)	143, 478
RsaNI	GTAC	2 cut(s)	142, 477
RseI	CAYNNNNRTG	1 cut(s)	663
SaqAI	TTAA	2 cut(s)	1107, 1368
SatI	GCNGC	2 cut(s)	502, 715
Sau3AI	GATC	5 cut(s)	106, 166, 361, 424, 1126
Sau96I	GGNCC	2 cut(s)	318, 716
SchI	GAGTC	3 cut(s)	367, 571, 692
ScrFI	CCNGG	2 cut(s)	1065, 1331
SfaNI	GCATC	1 cut(s)	800
SfcI	CTRYAG	2 cut(s)	499, 538
Sfr274I	CTCGAG	1 cut(s)	926
SinI	GGWCC	1 cut(s)	318
SlaI	CTCGAG	1 cut(s)	926
SmiMI	CAYNNNNRTG	1 cut(s)	663
SmlI	CTYRAG	1 cut(s)	926
SmoI	CTYRAG	1 cut(s)	926
Sse9I	AATT	5 cut(s)	145, 312, 469, 639, 764
SsiI	CCGC	5 cut(s)	128, 448, 559, 714, 1211
SspMI	CTAG	3 cut(s)	56, 80, 581
StyD4I	CCNGG	2 cut(s)	1063, 1329
TaaI	ACNGT	7 cut(s)	95, 119, 601, 776, 1003, 1284, 1360
TaiI	ACGT	4 cut(s)	309, 533, 999, 1296
TaqI	TCGA	8 cut(s)	423, 486, 749, 794, 927, 1032, 1251, 1286
TasI	AATT	5 cut(s)	145, 312, 469, 639, 764
TatI	WGTACW	2 cut(s)	141, 476
TauI	GCSGC	1 cut(s)	717
TfiI	GAWTC	7 cut(s)	34, 122, 805, 1034, 1085, 1138, 1248
Tru1I	TTAA	2 cut(s)	1107, 1368
Tru9I	TTAA	2 cut(s)	1107, 1368
TscAI	CASTG	5 cut(s)	106, 364, 850, 1006, 1236
TseFI	GTSAC	3 cut(s)	196, 533, 997
TseI	GCWGC	1 cut(s)	501
Tsp45I	GTSAC	3 cut(s)	196, 533, 997
TspDTI	ATGAA	5 cut(s)	26, 138, 317, 462, 540
TspGWI	ACGGA	3 cut(s)	142, 567, 1004
TspRI	CASTG	5 cut(s)	106, 364, 850, 1006, 1236
VpaK11BI	GGWCC	1 cut(s)	318
XapI	RAATTY	2 cut(s)	639, 764
XhoI	CTCGAG	1 cut(s)	926
XspI	CTAG	3 cut(s)	56, 80, 581
ZraI	GACGTC	1 cut(s)	997

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.