MD16G1288400.v1.1

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
41364288 .. 41365655
1368 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1288400.v1.1.491

Sequence Viewer

Length: 1368 bp
ATGAATCATTTTCCACTTGCCCTACTTGCATTTTTCATTTTGCTCACCCAAGCCAATAGCCACGGTTTCACTGCTGATCTCATACACCGCGACTCTCCCCTCTCTCCCTGGTACAATTCATCCGTGTCTCATTACGATCGCTTGCACGATGCCTTTTGTCGTTCTGTCACACGTGCCAATCGCTTCGTCAAGCCAATAATCACCTCATCTTCGTCGTTGTCGTCATCAGCAGATATCCAGTCCAGAATAATATCAAGTAATGGAGAATACCTAATGAACGTATCAATTGGGACCCCGCCAGTTGAAGTCCTCGGAATAGCCGACACTGGCAGCGATCTCATTTGGACTCAATGCAAGCCATGCAAACAATGCTTCAACCAAAAACCTCCTCTCTTCGATCCCAAGAAATCGTCGACCTACCGCTCCATCCCCTGTCAGTCCAATTCATGTACTTATCTCGAAGAAGCCGCCTGCGGCACCCAAGACTACGAACACGAAACATGTGACTATAGCTATCGTTACGGCGACCGCTCTTTCACTAGAGGGACTCTAGCTGTTGAGACCTTCACCATTGGATCAACTACCGGTCGTCCAGTTTCGCTTCCGAAAATTCTCTTCGGTTGTGGGCATCAAAATGGTGGTACATTTGACGAGTCCGGTTCTGGCTTGATTGGCCTCGGAGGCGGCCCTCTTTCCCTCGCTTCTCAACTGACTAAATCTACCGGTGGTGGTAAATTTTCCTACTGTTTGGTGCCTCTGGCATCAAATAGTGAGAATCCGAACAATAACTTGGCGAGCAAGATAAGTTTTGGCAGTGCCGGCATTGTCTCGGGTGCTGGTGCTGTTTCAACTCCTCTAGTTGCGAAAGAGCCCGACACTTTCTATTACCTCACACTCGAGGCCATTAGCGTTGGAGAGAAGAGGTTGGCCTACAAAACCAAATCACCGAACTGCGAAGATAGTCCTGCTGTTGCTGTTGCTGGCAATGAGGGTAACATTATCATCGACTCAGGTACTACTTTGACATTCCTTCCACCTGGATTTTATGACGATTTGGTATCGGCGTTGGAGGTTGCCATTAACGCAGAGAGGGTTAGTGATCCGAGGGGGATTCTGAGCCTTTGTTTTCGAAGCGAAGGCGATGACATTGGTGTTCCCGTTATAACTGCGCACTTCAAGGGTGCGGATGTGAAGATGCAGGCAGTAAACACATTTGCTAGAATGGAGGAAGATTTGGTTTGCCTGACAATGATACCGTCCAGTGACGTTGCAATATTTGGGAACTTGGCTCAAATCAACTTCTTGGTGGGTTATGATCTTGAGGACAGAACTGTGTCGTTTAAGCCGGCTGATTGCACCAAGCATTGA

Protein Analysis

456

Amino Acids

48.86

Weight (kDa)

5.33

Isoelectric Point (pI)

37.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp PF00026 89 - 448 1.4e-14 Eukaryotic aspartyl protease
TAXi_N PF14543 90 - 259 1.2e-54 Xylanase inhibitor N-terminal
TAXi_C PF14541 295 - 448 5.5e-23 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1163
Acc16I TGCGCA 1 cut(s) 1170
AccB1I GGYRCC 2 cut(s) 476, 751
AccBSI CCGCTC 2 cut(s) 423, 531
AccI GTMKAC 1 cut(s) 413
AccII CGCG 1 cut(s) 90
AciI CCGC 8 cut(s) 88, 296, 421, 468, 474, 529, 684, 1184
AclWI GGATC 3 cut(s) 392, 583, 1094
AcsI RAATTY 2 cut(s) 609, 734
AcvI CACGTG 1 cut(s) 173
AfaI GTAC 4 cut(s) 113, 451, 643, 1015
AflIII ACRYGT 2 cut(s) 170, 500
AgeI ACCGGT 2 cut(s) 584, 722
AgsI TTSAA 4 cut(s) 305, 376, 849, 1177
AjnI CCWGG 2 cut(s) 107, 1036
AjuI GAANNNNNNNTTGG 2 cut(s) 773, 805
AluBI AGCT 2 cut(s) 513, 554
AluI AGCT 2 cut(s) 513, 554
Alw26I GTCTC 3 cut(s) 132, 554, 832
AlwI GGATC 3 cut(s) 392, 583, 1094
Ama87I CYCGRG 2 cut(s) 829, 896
AoxI GGCC 4 cut(s) 673, 685, 900, 927
ApeKI GCWGC 1 cut(s) 330
ApoI RAATTY 2 cut(s) 609, 734
AsiGI ACCGGT 2 cut(s) 584, 722
AspLEI GCGC 1 cut(s) 1171
AspS9I GGNCC 2 cut(s) 291, 686
AsuHPI GGTGA 4 cut(s) 37, 193, 559, 936
AsuII TTCGAA 1 cut(s) 1129
AvaI CYCGRG 2 cut(s) 829, 896
AvaII GGWCC 1 cut(s) 291
BanI GGYRCC 2 cut(s) 476, 751
BanII GRGCYC 1 cut(s) 873
BbrPI CACGTG 1 cut(s) 173
BbvI GCAGC 1 cut(s) 342
BccI CCATC 1 cut(s) 434
BceAI ACGGC 1 cut(s) 538
BciT130I CCWGG 2 cut(s) 109, 1038
BcoDI GTCTC 3 cut(s) 132, 554, 832
BfaI CTAG 4 cut(s) 540, 551, 857, 1218
BfmI CTRYAG 1 cut(s) 508
BglI GCCNNNNNGGC 1 cut(s) 681
BisI GCNGC 4 cut(s) 331, 468, 475, 685
BlsI GCNGC 4 cut(s) 332, 469, 476, 686
Bme1390I CCNGG 2 cut(s) 109, 1038
Bme18I GGWCC 1 cut(s) 291
BmeT110I CYCGRG 2 cut(s) 829, 896
BmgT120I GGNCC 2 cut(s) 291, 686
BmiI GGNNCC 4 cut(s) 292, 293, 478, 753
BmrFI CCNGG 2 cut(s) 109, 1038
BmsI GCATC 4 cut(s) 139, 637, 770, 1185
Bpu14I TTCGAA 1 cut(s) 1129
BpuEI CTTGAG 1 cut(s) 1340
BsaAI YACGTR 1 cut(s) 173
BsaI GGTCTC 1 cut(s) 554
BsaJI CCNNGG 5 cut(s) 61, 107, 310, 676, 1103
BsaWI WCCGGW 3 cut(s) 584, 656, 722
Bse118I RCCGGY 4 cut(s) 584, 722, 818, 1345
Bse1I ACTGG 5 cut(s) 238, 299, 331, 593, 1260
Bse3DI GCAATG 1 cut(s) 991
BseBI CCWGG 2 cut(s) 109, 1038
BseDI CCNNGG 5 cut(s) 61, 107, 310, 676, 1103
BseGI GGATG 3 cut(s) 119, 426, 1192
BseMI GCAATG 1 cut(s) 991
BseMII CTCAG 2 cut(s) 1023, 1106
BseNI ACTGG 5 cut(s) 238, 299, 331, 593, 1260
BseRI GAGGAG 2 cut(s) 378, 843
BseXI GCAGC 1 cut(s) 342
Bsh1236I CGCG 1 cut(s) 90
Bsh1285I CGRYCG 3 cut(s) 139, 529, 589
BshFI GGCC 4 cut(s) 675, 687, 902, 929
BshNI GGYRCC 2 cut(s) 476, 751
BshTI ACCGGT 2 cut(s) 584, 722
BsiEI CGRYCG 3 cut(s) 139, 529, 589
BsiHKCI CYCGRG 2 cut(s) 829, 896
BsiSI CCGG 5 cut(s) 585, 657, 723, 819, 1346
BslFI GGGAC 2 cut(s) 304, 559
BsmAI GTCTC 3 cut(s) 132, 554, 832
BsmFI GGGAC 2 cut(s) 304, 559
BsnI GGCC 4 cut(s) 675, 687, 902, 929
Bso31I GGTCTC 1 cut(s) 554
BsoBI CYCGRG 2 cut(s) 829, 896
Bsp119I TTCGAA 1 cut(s) 1129
Bsp1286I GDGCHC 1 cut(s) 873
Bsp143I GATC 7 cut(s) 76, 136, 334, 397, 575, 1099, 1315
BspACI CCGC 8 cut(s) 88, 296, 421, 468, 474, 529, 684, 1184
BspANI GGCC 4 cut(s) 675, 687, 902, 929
BspCNI CTCAG 2 cut(s) 1022, 1107
BspFNI CGCG 1 cut(s) 90
BspLI GGNNCC 4 cut(s) 292, 293, 478, 753
BspPI GGATC 3 cut(s) 392, 583, 1094
BspT104I TTCGAA 1 cut(s) 1129
BspT107I GGYRCC 2 cut(s) 476, 751
BspTNI GGTCTC 1 cut(s) 554
BsrBI CCGCTC 2 cut(s) 423, 531
BsrDI GCAATG 1 cut(s) 991
BsrFI RCCGGY 4 cut(s) 584, 722, 818, 1345
BsrI ACTGG 5 cut(s) 238, 299, 331, 593, 1260
BssAI RCCGGY 4 cut(s) 584, 722, 818, 1345
BssECI CCNNGG 5 cut(s) 61, 107, 310, 676, 1103
BssMI GATC 7 cut(s) 76, 136, 334, 397, 575, 1099, 1315
Bst2UI CCWGG 2 cut(s) 109, 1038
Bst4CI ACNGT 4 cut(s) 65, 746, 1257, 1333
Bst6I CTCTTC 3 cut(s) 398, 620, 914
BstAPI GCANNNNNTGC 2 cut(s) 360, 369
BstBAI YACGTR 1 cut(s) 173
BstBI TTCGAA 1 cut(s) 1129
BstC8I GCNNGC 8 cut(s) 143, 356, 472, 796, 820, 982, 1200, 1347
BstDEI CTNAG 2 cut(s) 1009, 1115
BstDSI CCRYGG 1 cut(s) 61
BstF5I GGATG 3 cut(s) 119, 426, 1192
BstFNI CGCG 1 cut(s) 90
BstHHI GCGC 1 cut(s) 1171
BstKTI GATC 7 cut(s) 79, 139, 337, 400, 578, 1102, 1318
BstMAI GTCTC 3 cut(s) 132, 554, 832
BstMBI GATC 7 cut(s) 76, 136, 334, 397, 575, 1099, 1315
BstMCI CGRYCG 3 cut(s) 139, 529, 589
BstMWI GCNNNNNNNGC 7 cut(s) 26, 360, 369, 672, 681, 819, 1082
BstNI CCWGG 2 cut(s) 109, 1038
BstNSI RCATGY 1 cut(s) 504
BstSCI CCNGG 2 cut(s) 107, 1036
BstSFI CTRYAG 1 cut(s) 508
BstUI CGCG 1 cut(s) 90
BstV1I GCAGC 1 cut(s) 342
BsuRI GGCC 4 cut(s) 675, 687, 902, 929
BtgI CCRYGG 1 cut(s) 61
BtgZI GCGATG 1 cut(s) 1155
BtsCI GGATG 3 cut(s) 119, 426, 1192
BtsI GCAGTG 2 cut(s) 69, 820
BtsIMutI CAGTG 4 cut(s) 69, 324, 820, 1267
Cac8I GCNNGC 8 cut(s) 143, 356, 472, 796, 820, 982, 1200, 1347
CfoI GCGC 1 cut(s) 1171
Cfr10I RCCGGY 4 cut(s) 584, 722, 818, 1345
Cfr13I GGNCC 2 cut(s) 291, 686
Csp6I GTAC 4 cut(s) 112, 450, 642, 1014
CspAI ACCGGT 2 cut(s) 584, 722
CviAII CATG 3 cut(s) 360, 447, 501
CviQI GTAC 4 cut(s) 112, 450, 642, 1014
DdeI CTNAG 2 cut(s) 1009, 1115
DpnI GATC 7 cut(s) 78, 138, 336, 399, 577, 1101, 1317
DpnII GATC 7 cut(s) 76, 136, 334, 397, 575, 1099, 1315
Eam1104I CTCTTC 3 cut(s) 398, 620, 914
EarI CTCTTC 3 cut(s) 398, 620, 914
Eco24I GRGCYC 1 cut(s) 873
Eco31I GGTCTC 1 cut(s) 554
Eco32I GATATC 1 cut(s) 235
Eco47I GGWCC 1 cut(s) 291
Eco72I CACGTG 1 cut(s) 173
Eco88I CYCGRG 2 cut(s) 829, 896
EcoO109I RGGNCCY 1 cut(s) 291
EcoRII CCWGG 2 cut(s) 107, 1036
EcoRV GATATC 1 cut(s) 235
EcoT38I GRGCYC 1 cut(s) 873
FaeI CATG 3 cut(s) 363, 450, 504
FaiI YATR 8 cut(s) 83, 361, 448, 502, 510, 1047, 1163, 1314
FaqI GGGAC 2 cut(s) 304, 559
FatI CATG 3 cut(s) 359, 446, 500
FauI CCCGC 1 cut(s) 303
FblI GTMKAC 1 cut(s) 413
Fnu4HI GCNGC 4 cut(s) 331, 468, 475, 685
FokI GGATG 3 cut(s) 106, 413, 1199
FriOI GRGCYC 1 cut(s) 873
Fsp4HI GCNGC 4 cut(s) 331, 468, 475, 685
FspBI CTAG 4 cut(s) 540, 551, 857, 1218
FspI TGCGCA 1 cut(s) 1170
GlaI GCGC 1 cut(s) 1170
GluI GCNGC 4 cut(s) 331, 468, 475, 685
HaeIII GGCC 4 cut(s) 675, 687, 902, 929
HapII CCGG 5 cut(s) 585, 657, 723, 819, 1346
HhaI GCGC 1 cut(s) 1171
Hin1II CATG 3 cut(s) 363, 450, 504
Hin6I GCGC 1 cut(s) 1169
HinP1I GCGC 1 cut(s) 1169
HincII GTYRAC 1 cut(s) 414
HindII GTYRAC 1 cut(s) 414
HinfI GANTC 8 cut(s) 4, 92, 346, 547, 653, 775, 1007, 1111
HpaII CCGG 5 cut(s) 585, 657, 723, 819, 1346
HphI GGTGA 4 cut(s) 37, 193, 559, 936
Hpy166II GTNNAC 2 cut(s) 414, 1207
Hpy188I TCNGA 6 cut(s) 314, 606, 680, 780, 1104, 1116
Hpy188III TCNNGA 3 cut(s) 243, 458, 1319
Hpy8I GTNNAC 2 cut(s) 414, 1207
Hpy99I CGWCG 2 cut(s) 217, 415
HpyAV CCTTC 3 cut(s) 574, 1040, 1130
HpyCH4III ACNGT 4 cut(s) 65, 746, 1257, 1333
HpyCH4IV ACGT 3 cut(s) 172, 279, 1266
HpyCH4V TGCA 7 cut(s) 29, 145, 354, 363, 1198, 1271, 1356
HpyF10VI GCNNNNNNNGC 7 cut(s) 26, 360, 369, 672, 681, 819, 1082
HpyF3I CTNAG 2 cut(s) 1009, 1115
HpySE526I ACGT 3 cut(s) 172, 279, 1266
Hsp92II CATG 3 cut(s) 363, 450, 504
HspAI GCGC 1 cut(s) 1169
KflI GGGWCCC 1 cut(s) 291
KroI GCCGGC 2 cut(s) 818, 1345
KroNI GCCGGC 2 cut(s) 820, 1347
Kzo9I GATC 7 cut(s) 76, 136, 334, 397, 575, 1099, 1315
LmnI GCTCC 1 cut(s) 428
Lsp1109I GCAGC 1 cut(s) 342
LweI GCATC 4 cut(s) 139, 637, 770, 1185
MaeI CTAG 4 cut(s) 540, 551, 857, 1218
MaeII ACGT 3 cut(s) 172, 279, 1266
MaeIII GTNAC 5 cut(s) 166, 503, 518, 992, 1262
MalI GATC 7 cut(s) 78, 138, 336, 399, 577, 1101, 1317
MbiI CCGCTC 2 cut(s) 423, 531
MboI GATC 7 cut(s) 76, 136, 334, 397, 575, 1099, 1315
MboII GAAGA 8 cut(s) 201, 385, 473, 607, 931, 968, 1204, 1241
MfeI CAATTG 1 cut(s) 285
MhlI GDGCHC 1 cut(s) 873
MluCI AATT 5 cut(s) 115, 285, 442, 609, 734
MlyI GAGTC 5 cut(s) 86, 340, 541, 662, 1001
MmeI TCCRAC 2 cut(s) 892, 1047
MroNI GCCGGC 2 cut(s) 818, 1345
MseI TTAA 2 cut(s) 1080, 1341
MslI CAYNNNNRTG 1 cut(s) 633
MspI CCGG 5 cut(s) 585, 657, 723, 819, 1346
MspR9I CCNGG 2 cut(s) 109, 1038
MunI CAATTG 1 cut(s) 285
MvaI CCWGG 2 cut(s) 109, 1038
MvnI CGCG 1 cut(s) 90
MwoI GCNNNNNNNGC 7 cut(s) 26, 360, 369, 672, 681, 819, 1082
NaeI GCCGGC 2 cut(s) 820, 1347
NdeII GATC 7 cut(s) 76, 136, 334, 397, 575, 1099, 1315
NgoMIV GCCGGC 2 cut(s) 818, 1345
NlaIII CATG 3 cut(s) 363, 450, 504
NlaIV GGNNCC 4 cut(s) 292, 293, 478, 753
NmuCI GTSAC 3 cut(s) 166, 503, 1262
NsbI TGCGCA 1 cut(s) 1170
NspI RCATGY 1 cut(s) 504
NspV TTCGAA 1 cut(s) 1129
PaeR7I CTCGAG 1 cut(s) 896
PciI ACATGT 1 cut(s) 500
PcsI WCGNNNNNNNCGW 2 cut(s) 218, 318
PdiI GCCGGC 2 cut(s) 820, 1347
PfeI GAWTC 3 cut(s) 4, 775, 1111
PinAI ACCGGT 2 cut(s) 584, 722
PkrI GCNGC 4 cut(s) 332, 469, 476, 686
Ple19I CGATCG 1 cut(s) 139
PleI GAGTC 5 cut(s) 86, 340, 541, 661, 1001
PmaCI CACGTG 1 cut(s) 173
PmlI CACGTG 1 cut(s) 173
PpsI GAGTC 5 cut(s) 86, 340, 541, 661, 1001
Ppu21I YACGTR 1 cut(s) 173
PpuMI RGGWCCY 1 cut(s) 291
PscI ACATGT 1 cut(s) 500
PsiI TTATAA 1 cut(s) 1163
Psp5II RGGWCCY 1 cut(s) 291
Psp6I CCWGG 2 cut(s) 107, 1036
PspCI CACGTG 1 cut(s) 173
PspGI CCWGG 2 cut(s) 107, 1036
PspN4I GGNNCC 4 cut(s) 292, 293, 478, 753
PspPI GGNCC 2 cut(s) 291, 686
PspPPI RGGWCCY 1 cut(s) 291
PspXI VCTCGAGB 1 cut(s) 896
PvuI CGATCG 1 cut(s) 139
RsaI GTAC 4 cut(s) 113, 451, 643, 1015
RsaNI GTAC 4 cut(s) 112, 450, 642, 1014
RseI CAYNNNNRTG 1 cut(s) 633
SalI GTCGAC 1 cut(s) 412
SaqAI TTAA 2 cut(s) 1080, 1341
SatI GCNGC 4 cut(s) 331, 468, 475, 685
Sau3AI GATC 7 cut(s) 76, 136, 334, 397, 575, 1099, 1315
Sau96I GGNCC 2 cut(s) 291, 686
SchI GAGTC 5 cut(s) 86, 340, 541, 662, 1001
ScrFI CCNGG 2 cut(s) 109, 1038
SduI GDGCHC 1 cut(s) 873
SfaNI GCATC 4 cut(s) 139, 637, 770, 1185
SfcI CTRYAG 1 cut(s) 508
Sfr274I CTCGAG 1 cut(s) 896
SfuI TTCGAA 1 cut(s) 1129
SinI GGWCC 1 cut(s) 291
SlaI CTCGAG 1 cut(s) 896
SmiMI CAYNNNNRTG 1 cut(s) 633
SmlI CTYRAG 2 cut(s) 896, 1319
SmoI CTYRAG 2 cut(s) 896, 1319
Sse9I AATT 5 cut(s) 115, 285, 442, 609, 734
SsiI CCGC 8 cut(s) 88, 296, 421, 468, 474, 529, 684, 1184
SspI AATATT 1 cut(s) 1275
SspMI CTAG 4 cut(s) 540, 551, 857, 1218
StyD4I CCNGG 2 cut(s) 107, 1036
TaaI ACNGT 4 cut(s) 65, 746, 1257, 1333
TaiI ACGT 3 cut(s) 175, 282, 1269
TaqI TCGA 6 cut(s) 396, 413, 459, 897, 1005, 1129
TasI AATT 5 cut(s) 115, 285, 442, 609, 734
TatI WGTACW 1 cut(s) 449
TauI GCSGC 3 cut(s) 470, 477, 687
TfiI GAWTC 3 cut(s) 4, 775, 1111
Tru1I TTAA 2 cut(s) 1080, 1341
Tru9I TTAA 2 cut(s) 1080, 1341
TscAI CASTG 4 cut(s) 76, 331, 820, 1267
TseFI GTSAC 3 cut(s) 166, 503, 1262
TseI GCWGC 1 cut(s) 330
Tsp45I GTSAC 3 cut(s) 166, 503, 1262
TspDTI ATGAA 5 cut(s) 17, 25, 108, 290, 435
TspGWI ACGGA 1 cut(s) 112
TspRI CASTG 4 cut(s) 76, 331, 820, 1267
VpaK11BI GGWCC 1 cut(s) 291
XapI RAATTY 2 cut(s) 609, 734
XceI RCATGY 1 cut(s) 504
XhoI CTCGAG 1 cut(s) 896
XmiI GTMKAC 1 cut(s) 413
XspI CTAG 4 cut(s) 540, 551, 857, 1218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.