Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0006976

Physical Location & Seq

Genomic Coordinates Reverse (-)

2698993 .. 2700420

Gene Structure 1428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1021800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

ATGAATCACCGAACCAAACCAAGACAAACTGATATGGCGACCTTCGCCCTTTCTGCTTGCAATATGATTCATTTTCCACTTGCCGTACTAGCATATTTCACTTTGCTCACGCTAGCCAATAGCCACGGTTTCACTGCCGATCTCATACACCGTGATTCTCCGCTCTCTCCCTGGTACAATTCATCCGTCTCTCGTTACGATCGCTTGCATAATGCCTTTCGCCGTTCTGTCACTCGTGCCAATCACTTCGTCAAGCCAATAATCACCTCATTATCGTCGTCGTCATCAGCAAATATCCAGTCCAGAATAATATCAAGTGCTGGAGAATACCTAATGAACGTATCAATTGGGACCCCACCAGTTGAAGTTCTCGGAATAGCTGACACAGGCAGTGATCTCATCTGGACTCAATGCAAGCCATGCAAGCAATGCTTCAACCAAAACCCTCCTCTCTTCGATCCCAAGAAATCGTCAACCTACCGCTCCATCCCGTGTCAGTCCAATTCATGTACTTATCTCGAAGAAGCCTCCTGCAGCACCGAAGACAACGAAGGTCATGAAACGTGTGACTATAGCTATCATTACGGAGACCGCTCTTTCACTAGAGGGACTCTAGCTGTTGAGACCTTCACCATTGGATCAACTTCTGGCCGTCCAGTTTCACTCCCGAAAATTCTCTTCGGTTGTGGACATCAAAATGGTGGCACATTTGATGAGTCCGGTTCTGGCTTGATTGGCCTCGGTGGAGGCCCTCTTTCCCTCGTTTCTCAGCTGACTAAATCGACCAACGGAGGGAAATTTTCCTACTGTCTGGTGCCCCTGGCATCGAATAGTAAGAATTCAAACAATAACTTGGCGAGCAAGATAAGTTTTGGCAGTGCTGGCATTGTTTCAGGTGCCGGTGCTGTTTCAACACCTATAGTTGCTAAACAGCCCGACACTTTCTATTACCTCACGCTCGAGGCCATTAGCGTTGGAGAGAAGCGGTTGGCCTACAAAACCAAATCATCACCGAACTTTGAGGATGACGTCGCTGTTGCTGCCAATGAGGGCAACATTATCATCGACTCGGGGACTACTTTGACCCTCCTTCCACCTGGATTTTACGAGGATTTGGAATCGGCGTTGGAGGTTGCCATTAACGCAGAGAGGGTTAGTGATCCGAAGGGGATTCTGAGCCTTTGCTTCCGAAGCGAAAGCGATGACATTGGTGTTCCGGTCATAACTGCACATTTCAAGGGTGCGGATGTAAAGTTGCAGGCAGTGAACACATTTGCCAGAATCGAGGACGATTTGGTTTGCTTGACAATGATACCGTCGAGTGACGTGGCGATATTTGGTAACTTGGCTCAAATCAACTTCCTGGTGGGATATGACCTTGAAGAAAGAACTGTGTCGTTTAAGCCGGCTGATTGCACCGAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04071 ko04138 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04138 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

476

Amino Acids

51.19

Weight (kDa)

5.59

Isoelectric Point (pI)

42.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asp	PF00026	109 - 468	6.1e-18	Eukaryotic aspartyl protease
TAXi_N	PF14543	110 - 282	5.3e-55	Xylanase inhibitor N-terminal
TAXi_C	PF14541	316 - 468	3.7e-23	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31450 AT2G35615
fragaria_vesca	FvH4_1g21300 FvH4_5g24370
malus_domestica	MD06G1021800.v1.1 MD16G1288400.v1.1
prunus_persica	Prupe.5G017100_v2.0.a1
pyrus_communis	pycom06g01570
rosa_chinensis	RchiOBHm_Chr2g0115131 RchiOBHm_Chr7g0214751
rosa_laevigata	RLG00000002724 RLG00000018161
rosa_roxburghii	Rroxscaffold_2G00130610 Rroxscaffold_3G00245120
rosa_rugosa	Rorug02G0193900
rosa_samantha	Rh2AG252400 Rh2BG261900 Rh2CG256900 Rh2DG260600 Rh7AG283700 Rh7BG274400 Rh7CG303100 Rh7DG287100
rosa_wichuraiana	Rw2G019680 Rw7G024190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1032
AccB1I	GGYRCC	2 cut(s)	814, 896
AccBSI	CCGCTC	3 cut(s)	163, 483, 594
AciI	CCGC	5 cut(s)	161, 481, 592, 985, 1244
AclWI	GGATC	3 cut(s)	452, 646, 1154
AcoI	YGGCCR	1 cut(s)	649
AcsI	RAATTY	3 cut(s)	672, 797, 838
AcyI	GRCGYC	1 cut(s)	1029
AfaI	GTAC	3 cut(s)	87, 176, 511
AfiI	CCNNNNNNNGG	1 cut(s)	792
AflIII	ACRYGT	1 cut(s)	563
AgsI	TTSAA	6 cut(s)	365, 436, 843, 912, 1237, 1382
AjiI	CACGTC	1 cut(s)	1327
AjnI	CCWGG	4 cut(s)	170, 819, 1096, 1362
AluBI	AGCT	4 cut(s)	380, 576, 617, 772
AluI	AGCT	4 cut(s)	380, 576, 617, 772
Alw26I	GTCTC	3 cut(s)	193, 582, 617
AlwI	GGATC	3 cut(s)	452, 646, 1154
Ama87I	CYCGRG	2 cut(s)	959, 1069
AoxI	GGCC	5 cut(s)	649, 736, 748, 963, 990
ApeKI	GCWGC	2 cut(s)	534, 1040
ApoI	RAATTY	3 cut(s)	672, 797, 838
ArsI	GACNNNNNNTTYG	2 cut(s)	284, 316
AspS9I	GGNCC	2 cut(s)	351, 749
AsuHPI	GGTGA	3 cut(s)	256, 622, 1002
AsuNHI	GCTAGC	1 cut(s)	112
AvaI	CYCGRG	2 cut(s)	959, 1069
AvaII	GGWCC	1 cut(s)	351
BaeGI	GKGCMC	1 cut(s)	819
BanI	GGYRCC	2 cut(s)	814, 896
BauI	CACGAG	1 cut(s)	234
BbsI	GAAGAC	1 cut(s)	549
BbvI	GCAGC	2 cut(s)	546, 1027
BccI	CCATC	1 cut(s)	494
BceAI	ACGGC	3 cut(s)	68, 207, 636
BciT130I	CCWGG	4 cut(s)	172, 821, 1098, 1364
BcoDI	GTCTC	3 cut(s)	193, 582, 617
BfaI	CTAG	4 cut(s)	89, 113, 603, 614
BfmI	CTRYAG	3 cut(s)	532, 571, 918
BisI	GCNGC	2 cut(s)	535, 1041
BlsI	GCNGC	2 cut(s)	536, 1042
Bme1390I	CCNGG	4 cut(s)	172, 821, 1098, 1364
Bme18I	GGWCC	1 cut(s)	351
BmeT110I	CYCGRG	2 cut(s)	959, 1069
BmgBI	CACGTC	1 cut(s)	1327
BmgT120I	GGNCC	2 cut(s)	351, 749
BmiI	GGNNCC	4 cut(s)	352, 353, 816, 898
BmrFI	CCNGG	4 cut(s)	172, 821, 1098, 1364
BmsI	GCATC	1 cut(s)	833
BmtI	GCTAGC	1 cut(s)	116
BpiI	GAAGAC	1 cut(s)	549
BpmI	CTGGAG	1 cut(s)	342
BsaHI	GRCGYC	1 cut(s)	1029
BsaI	GGTCTC	2 cut(s)	582, 617
BsaJI	CCNNGG	4 cut(s)	124, 170, 739, 819
BsaWI	WCCGGW	2 cut(s)	719, 1216
Bsc4I	CCNNNNNNNGG	1 cut(s)	792
Bse118I	RCCGGY	2 cut(s)	899, 1405
Bse1I	ACTGG	3 cut(s)	298, 359, 656
Bse3DI	GCAATG	1 cut(s)	434
BseBI	CCWGG	4 cut(s)	172, 821, 1098, 1364
BseDI	CCNNGG	4 cut(s)	124, 170, 739, 819
BseGI	GGATG	4 cut(s)	182, 486, 1030, 1252
BseLI	CCNNNNNNNGG	1 cut(s)	792
BseMI	GCAATG	1 cut(s)	434
BseMII	CTCAG	2 cut(s)	782, 1166
BseNI	ACTGG	3 cut(s)	298, 359, 656
BseRI	GAGGAG	1 cut(s)	438
BseSI	GKGCMC	1 cut(s)	819
BseXI	GCAGC	2 cut(s)	546, 1027
BsgI	GTGCAG	1 cut(s)	1212
Bsh1285I	CGRYCG	1 cut(s)	202
BshFI	GGCC	5 cut(s)	651, 738, 750, 965, 992
BshNI	GGYRCC	2 cut(s)	814, 896
BsiEI	CGRYCG	1 cut(s)	202
BsiHKCI	CYCGRG	2 cut(s)	959, 1069
BsiSI	CCGG	4 cut(s)	720, 900, 1217, 1406
BslFI	GGGAC	3 cut(s)	364, 622, 1087
BslI	CCNNNNNNNGG	1 cut(s)	792
BsmAI	GTCTC	3 cut(s)	193, 582, 617
BsmBI	CGTCTC	1 cut(s)	193
BsmFI	GGGAC	3 cut(s)	364, 622, 1087
BsnI	GGCC	5 cut(s)	651, 738, 750, 965, 992
Bso31I	GGTCTC	2 cut(s)	582, 617
BsoBI	CYCGRG	2 cut(s)	959, 1069
Bsp1286I	GDGCHC	1 cut(s)	819
Bsp143I	GATC	6 cut(s)	139, 199, 394, 457, 638, 1159
BspACI	CCGC	5 cut(s)	161, 481, 592, 985, 1244
BspANI	GGCC	5 cut(s)	651, 738, 750, 965, 992
BspCNI	CTCAG	2 cut(s)	781, 1167
BspHI	TCATGA	1 cut(s)	556
BspLI	GGNNCC	4 cut(s)	352, 353, 816, 898
BspMAI	CTGCAG	1 cut(s)	536
BspOI	GCTAGC	1 cut(s)	116
BspPI	GGATC	3 cut(s)	452, 646, 1154
BspT107I	GGYRCC	2 cut(s)	814, 896
BspTNI	GGTCTC	2 cut(s)	582, 617
BsrBI	CCGCTC	3 cut(s)	163, 483, 594
BsrDI	GCAATG	1 cut(s)	434
BsrFI	RCCGGY	2 cut(s)	899, 1405
BsrI	ACTGG	3 cut(s)	298, 359, 656
BssAI	RCCGGY	2 cut(s)	899, 1405
BssECI	CCNNGG	4 cut(s)	124, 170, 739, 819
BssMI	GATC	6 cut(s)	139, 199, 394, 457, 638, 1159
BssNI	GRCGYC	1 cut(s)	1029
BssSI	CACGAG	1 cut(s)	234
Bst2BI	CACGAG	1 cut(s)	234
Bst2UI	CCWGG	4 cut(s)	172, 821, 1098, 1364
Bst4CI	ACNGT	5 cut(s)	128, 152, 809, 1317, 1393
Bst6I	CTCTTC	2 cut(s)	458, 683
BstACI	GRCGYC	1 cut(s)	1029
BstAPI	GCANNNNNTGC	2 cut(s)	420, 429
BstC8I	GCNNGC	9 cut(s)	58, 114, 206, 416, 425, 859, 883, 1260, 1407
BstDEI	CTNAG	2 cut(s)	768, 1175
BstDSI	CCRYGG	1 cut(s)	124
BstF5I	GGATG	4 cut(s)	182, 486, 1030, 1252
BstKTI	GATC	6 cut(s)	142, 202, 397, 460, 641, 1162
BstMAI	GTCTC	3 cut(s)	193, 582, 617
BstMBI	GATC	6 cut(s)	139, 199, 394, 457, 638, 1159
BstMCI	CGRYCG	1 cut(s)	202
BstNI	CCWGG	4 cut(s)	172, 821, 1098, 1364
BstSCI	CCNGG	4 cut(s)	170, 819, 1096, 1362
BstSFI	CTRYAG	3 cut(s)	532, 571, 918
BstSLI	GKGCMC	1 cut(s)	819
BstV1I	GCAGC	2 cut(s)	546, 1027
BstV2I	GAAGAC	1 cut(s)	549
BsuRI	GGCC	5 cut(s)	651, 738, 750, 965, 992
BtgI	CCRYGG	1 cut(s)	124
BtgZI	GCGATG	1 cut(s)	1215
BtrI	CACGTC	1 cut(s)	1327
BtsCI	GGATG	4 cut(s)	182, 486, 1030, 1252
BtsI	GCAGTG	4 cut(s)	132, 397, 883, 1269
BtsIMutI	CAGTG	4 cut(s)	132, 397, 883, 1269
Cac8I	GCNNGC	9 cut(s)	58, 114, 206, 416, 425, 859, 883, 1260, 1407
CciI	TCATGA	1 cut(s)	556
Cfr10I	RCCGGY	2 cut(s)	899, 1405
Cfr13I	GGNCC	2 cut(s)	351, 749
Csp6I	GTAC	3 cut(s)	86, 175, 510
CviAII	CATG	3 cut(s)	420, 507, 557
CviQI	GTAC	3 cut(s)	86, 175, 510
DdeI	CTNAG	2 cut(s)	768, 1175
DpnI	GATC	6 cut(s)	141, 201, 396, 459, 640, 1161
DpnII	GATC	6 cut(s)	139, 199, 394, 457, 638, 1159
EaeI	YGGCCR	1 cut(s)	649
Eam1104I	CTCTTC	2 cut(s)	458, 683
EarI	CTCTTC	2 cut(s)	458, 683
Eco31I	GGTCTC	2 cut(s)	582, 617
Eco47I	GGWCC	1 cut(s)	351
Eco88I	CYCGRG	2 cut(s)	959, 1069
EcoO109I	RGGNCCY	2 cut(s)	351, 749
EcoRI	GAATTC	1 cut(s)	838
EcoRII	CCWGG	4 cut(s)	170, 819, 1096, 1362
Esp3I	CGTCTC	1 cut(s)	193
FaeI	CATG	3 cut(s)	423, 510, 560
FalI	AAGNNNNNCTT	2 cut(s)	416, 448
FaqI	GGGAC	3 cut(s)	364, 622, 1087
FatI	CATG	3 cut(s)	419, 506, 556
Fnu4HI	GCNGC	2 cut(s)	535, 1041
FokI	GGATG	4 cut(s)	169, 473, 1037, 1259
Fsp4HI	GCNGC	2 cut(s)	535, 1041
FspBI	CTAG	4 cut(s)	89, 113, 603, 614
GluI	GCNGC	2 cut(s)	535, 1041
GsuI	CTGGAG	1 cut(s)	342
HaeIII	GGCC	5 cut(s)	651, 738, 750, 965, 992
HapII	CCGG	4 cut(s)	720, 900, 1217, 1406
Hin1I	GRCGYC	1 cut(s)	1029
Hin1II	CATG	3 cut(s)	423, 510, 560
HincII	GTYRAC	1 cut(s)	474
HindII	GTYRAC	1 cut(s)	474
HpaII	CCGG	4 cut(s)	720, 900, 1217, 1406
HphI	GGTGA	3 cut(s)	256, 622, 1002
Hpy166II	GTNNAC	3 cut(s)	474, 689, 1267
Hpy188I	TCNGA	4 cut(s)	374, 1164, 1176, 1190
Hpy188III	TCNNGA	5 cut(s)	303, 403, 518, 557, 667
Hpy8I	GTNNAC	3 cut(s)	474, 689, 1267
Hpy99I	CGWCG	4 cut(s)	280, 283, 1034, 1321
HpyAV	CCTTC	5 cut(s)	52, 545, 637, 1100, 1159
HpyCH4III	ACNGT	5 cut(s)	128, 152, 809, 1317, 1393
HpyCH4IV	ACGT	4 cut(s)	339, 563, 1029, 1326
HpyCH4V	TGCA	8 cut(s)	60, 208, 414, 423, 534, 1229, 1258, 1416
HpyF3I	CTNAG	2 cut(s)	768, 1175
HpySE526I	ACGT	4 cut(s)	339, 563, 1029, 1326
Hsp92I	GRCGYC	1 cut(s)	1029
Hsp92II	CATG	3 cut(s)	423, 510, 560
KflI	GGGWCCC	1 cut(s)	351
KroI	GCCGGC	1 cut(s)	1405
KroNI	GCCGGC	1 cut(s)	1407
Kzo9I	GATC	6 cut(s)	139, 199, 394, 457, 638, 1159
LmnI	GCTCC	1 cut(s)	488
Lsp1109I	GCAGC	2 cut(s)	546, 1027
LweI	GCATC	1 cut(s)	833
MaeI	CTAG	4 cut(s)	89, 113, 603, 614
MaeII	ACGT	4 cut(s)	339, 563, 1029, 1326
MaeIII	GTNAC	5 cut(s)	194, 229, 566, 1322, 1340
MalI	GATC	6 cut(s)	141, 201, 396, 459, 640, 1161
MbiI	CCGCTC	3 cut(s)	163, 483, 594
MboI	GATC	6 cut(s)	139, 199, 394, 457, 638, 1159
MboII	GAAGA	5 cut(s)	445, 533, 554, 670, 1394
MfeI	CAATTG	1 cut(s)	345
MhlI	GDGCHC	1 cut(s)	819
MluCI	AATT	6 cut(s)	178, 345, 502, 672, 797, 838
MlyI	GAGTC	4 cut(s)	400, 604, 725, 1061
MmeI	TCCRAC	2 cut(s)	955, 1107
MroNI	GCCGGC	1 cut(s)	1405
MseI	TTAA	2 cut(s)	1140, 1401
MslI	CAYNNNNRTG	1 cut(s)	696
MspA1I	CMGCKG	1 cut(s)	772
MspI	CCGG	4 cut(s)	720, 900, 1217, 1406
MspR9I	CCNGG	4 cut(s)	172, 821, 1098, 1364
MunI	CAATTG	1 cut(s)	345
MvaI	CCWGG	4 cut(s)	172, 821, 1098, 1364
NaeI	GCCGGC	1 cut(s)	1407
NdeII	GATC	6 cut(s)	139, 199, 394, 457, 638, 1159
NgoMIV	GCCGGC	1 cut(s)	1405
NheI	GCTAGC	1 cut(s)	112
NlaIII	CATG	3 cut(s)	423, 510, 560
NlaIV	GGNNCC	4 cut(s)	352, 353, 816, 898
NmuCI	GTSAC	3 cut(s)	229, 566, 1322
PaeR7I	CTCGAG	1 cut(s)	959
PagI	TCATGA	1 cut(s)	556
PdiI	GCCGGC	1 cut(s)	1407
PfeI	GAWTC	6 cut(s)	4, 67, 155, 1118, 1171, 1281
PkrI	GCNGC	2 cut(s)	536, 1042
Ple19I	CGATCG	1 cut(s)	202
PleI	GAGTC	4 cut(s)	400, 604, 724, 1061
PpsI	GAGTC	4 cut(s)	400, 604, 724, 1061
PpuMI	RGGWCCY	1 cut(s)	351
Psp5II	RGGWCCY	1 cut(s)	351
Psp6I	CCWGG	4 cut(s)	170, 819, 1096, 1362
PspGI	CCWGG	4 cut(s)	170, 819, 1096, 1362
PspN4I	GGNNCC	4 cut(s)	352, 353, 816, 898
PspPI	GGNCC	2 cut(s)	351, 749
PspPPI	RGGWCCY	1 cut(s)	351
PspXI	VCTCGAGB	1 cut(s)	959
PstI	CTGCAG	1 cut(s)	536
PvuI	CGATCG	1 cut(s)	202
PvuII	CAGCTG	1 cut(s)	772
RsaI	GTAC	3 cut(s)	87, 176, 511
RsaNI	GTAC	3 cut(s)	86, 175, 510
RseI	CAYNNNNRTG	1 cut(s)	696
SaqAI	TTAA	2 cut(s)	1140, 1401
SatI	GCNGC	2 cut(s)	535, 1041
Sau3AI	GATC	6 cut(s)	139, 199, 394, 457, 638, 1159
Sau96I	GGNCC	2 cut(s)	351, 749
SchI	GAGTC	4 cut(s)	400, 604, 725, 1061
ScrFI	CCNGG	4 cut(s)	172, 821, 1098, 1364
SduI	GDGCHC	1 cut(s)	819
SfaNI	GCATC	1 cut(s)	833
SfcI	CTRYAG	3 cut(s)	532, 571, 918
Sfr274I	CTCGAG	1 cut(s)	959
SinI	GGWCC	1 cut(s)	351
SlaI	CTCGAG	1 cut(s)	959
SmiMI	CAYNNNNRTG	1 cut(s)	696
SmlI	CTYRAG	1 cut(s)	959
SmoI	CTYRAG	1 cut(s)	959
Sse9I	AATT	6 cut(s)	178, 345, 502, 672, 797, 838
SsiI	CCGC	5 cut(s)	161, 481, 592, 985, 1244
SspMI	CTAG	4 cut(s)	89, 113, 603, 614
StyD4I	CCNGG	4 cut(s)	170, 819, 1096, 1362
TaaI	ACNGT	5 cut(s)	128, 152, 809, 1317, 1393
TaiI	ACGT	4 cut(s)	342, 566, 1032, 1329
TaqI	TCGA	8 cut(s)	456, 519, 782, 827, 960, 1065, 1284, 1319
TasI	AATT	6 cut(s)	178, 345, 502, 672, 797, 838
TatI	WGTACW	1 cut(s)	509
TfiI	GAWTC	6 cut(s)	4, 67, 155, 1118, 1171, 1281
Tru1I	TTAA	2 cut(s)	1140, 1401
Tru9I	TTAA	2 cut(s)	1140, 1401
TscAI	CASTG	4 cut(s)	139, 397, 883, 1269
TseFI	GTSAC	3 cut(s)	229, 566, 1322
TseI	GCWGC	2 cut(s)	534, 1040
Tsp45I	GTSAC	3 cut(s)	229, 566, 1322
TspDTI	ATGAA	6 cut(s)	17, 59, 171, 350, 495, 573
TspGWI	ACGGA	3 cut(s)	175, 600, 804
TspRI	CASTG	4 cut(s)	139, 397, 883, 1269
VpaK11BI	GGWCC	1 cut(s)	351
XapI	RAATTY	3 cut(s)	672, 797, 838
XhoI	CTCGAG	1 cut(s)	959
XspI	CTAG	4 cut(s)	89, 113, 603, 614
ZraI	GACGTC	1 cut(s)	1030

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.