RLG00000002724

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
38620627 .. 38621958
1332 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002724

Sequence Viewer

Length: 1332 bp
ATGGCGTCACAAACTCTTGCATGCTTCACTCTTCTTATATCAGTGATTTCCACTACTACTACTACTGTAACTGCTTTCACCGTCGATCTCATCCACCGCGACTCCCCACTCTCTCCCTTCTACGACTCCTCAACCACCCACTTCGATCGTCTCCGCGACTCCTTCCTCCGCTCCATCGCACGTGCCTCGCGCTTCACAGGAGCCACCACCAGCTCCCCAATCGAGTCAAAAGTGATCTCGAGCTCAGGAGAGTATCTCATGAACGTCTCCGTCGGAACCCCACCGGTGGAAGTCCTCGGAATCGCTGACACCGGCAGCGACCTCATCTGGACCCAATGCAAGCCATGCAAGCAGTGCTTCAACCAAAACCCTCCCCTCTTCGACCCAGCTCACTCCTCCACCTACAAAACCCTACCTTGCCAGTCCAGCTCATGCTCCAACCTCGACCAAGCCACCTGCGCCACCGCCGCCGAGTCCTCCAGCGGCCAAGACACCTGCCAGTACAGCTACCGTTACGGAGACCGCTCCTACACACGTGGGAGTCTAGCTCTCGAAACCTTCACCCTCGGATCAACCGCAGGCCGTAGGGTCTCGCTTCCGAAGATTGTCTTCGGTTGCGGCCATGAAAATGGCGGCACCTTCGACGAGTCAGGGTCCGGTCTGATCGGGCTAGGTGGCGGCCCACTTTCTTTCATTTCTCAGTTATCAAAATCGGTTAACGGAGGGAAGTTCTCCTATTGCTTGGTTCCTACGGCAGCCAAATCCGATGTAGAGAGCAAGATTAGTTTCGGTACAACTGGCCTTGTCTCCGGTGCCGGCACCGTTTCGACTCCTTTGGTCTCCAAACAGCCCGACACCTTCTATTACCTCACACTCGAGGCCATTAGTGTCGGAGAAAAGAAGTTACTCTACAAAAGCCAACCAAACAAGGCCGTCGCCGGAAGTGAGGGTAACATTATCATTGACTCCGGGACTACGTTGACGCTGCTCCCACCCGGATTCCACGACGACGTCGTATCGGCTCTGGAGGCAGCTATTAATGCAGAGCGGGTTAGTGATCCTAGAGGCGTTCTGAGTCTCTGCTTTAAGAGCAAGAAAGATGATATTGGTGTTCCGGTTATAACGGCGCATTTTAGCGGCGGCGCCGACGTTAAGTTGAACGCTTTGAACACATTTGCGAGGGTGGAAGATGATATGGTTTGCTTTACCATGATTCCGTCCGATGACGTTGCGATATTTGGGAACCTGGCTCAGATCAACTTCCTGGTGGGCTATGACCTAGACGAGAGGACTGTTTCCTTCAAGCCAACTGATTGCACTAAGCATCTCTAA

Protein Analysis

444

Amino Acids

47.05

Weight (kDa)

5.43

Isoelectric Point (pI)

34.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp PF00026 84 - 137 5.1e-06 Eukaryotic aspartyl protease
TAXi_N PF14543 85 - 264 9.7e-56 Xylanase inhibitor N-terminal
Asp PF00026 147 - 434 4.6e-11 Eukaryotic aspartyl protease
TAXi_C PF14541 288 - 435 2.7e-25 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1121
AarI CACCTGC 2 cut(s) 464, 503
AatII GACGTC 1 cut(s) 1014
Acc36I ACCTGC 2 cut(s) 464, 503
AccB1I GGYRCC 4 cut(s) 635, 812, 818, 1142
AccBSI CCGCTC 3 cut(s) 171, 525, 1048
AccII CGCG 3 cut(s) 99, 156, 190
AclWI GGATC 2 cut(s) 577, 1052
AcoI YGGCCR 2 cut(s) 484, 619
AcvI CACGTG 2 cut(s) 182, 536
AcyI GRCGYC 3 cut(s) 5, 1011, 1143
AfaI GTAC 2 cut(s) 503, 793
AfiI CCNNNNNNNGG 1 cut(s) 286
AflIII ACRYGT 1 cut(s) 533
AgeI ACCGGT 1 cut(s) 283
AgsI TTSAA 4 cut(s) 361, 1159, 1168, 1303
AjnI CCWGG 2 cut(s) 1245, 1263
AluBI AGCT 7 cut(s) 213, 243, 389, 429, 507, 548, 1034
AluI AGCT 7 cut(s) 213, 243, 389, 429, 507, 548, 1034
Alw21I GWGCWC 1 cut(s) 245
Alw26I GTCTC 7 cut(s) 155, 271, 513, 595, 811, 844, 1082
AlwI GGATC 2 cut(s) 577, 1052
Ama87I CYCGRG 2 cut(s) 238, 875
AoxI GGCC 7 cut(s) 484, 580, 619, 679, 799, 879, 930
ApeKI GCWGC 4 cut(s) 315, 755, 985, 1031
AseI ATTAAT 1 cut(s) 1038
AsiGI ACCGGT 1 cut(s) 283
AspLEI GCGC 4 cut(s) 192, 461, 1129, 1145
AspS9I GGNCC 3 cut(s) 330, 654, 680
AsuC2I CCSGG 2 cut(s) 970, 996
AsuHPI GGTGA 2 cut(s) 70, 553
AvaI CYCGRG 2 cut(s) 238, 875
AvaII GGWCC 2 cut(s) 330, 654
BanI GGYRCC 4 cut(s) 635, 812, 818, 1142
BanII GRGCYC 1 cut(s) 245
BarI GAAGNNNNNNTAC 2 cut(s) 893, 925
BbrPI CACGTG 2 cut(s) 182, 536
BbsI GAAGAC 1 cut(s) 601
Bbv12I GWGCWC 1 cut(s) 245
BbvI GCAGC 4 cut(s) 327, 767, 972, 1043
BccI CCATC 1 cut(s) 182
BceAI ACGGC 4 cut(s) 567, 768, 917, 1140
BcgI CGANNNNNNTGC 4 cut(s) 168, 202, 1211, 1245
BciT130I CCWGG 2 cut(s) 1247, 1265
BcnI CCSGG 2 cut(s) 970, 996
BcoDI GTCTC 7 cut(s) 155, 271, 513, 595, 811, 844, 1082
BfaI CTAG 4 cut(s) 545, 671, 1062, 1280
BfoI RGCGCY 1 cut(s) 1146
BfuAI ACCTGC 2 cut(s) 464, 503
Bme1390I CCNGG 4 cut(s) 970, 996, 1247, 1265
Bme18I GGWCC 2 cut(s) 330, 654
BmeT110I CYCGRG 2 cut(s) 238, 875
BmgT120I GGNCC 3 cut(s) 330, 654, 680
BmrFI CCNGG 4 cut(s) 970, 996, 1247, 1265
BpiI GAAGAC 1 cut(s) 601
BplI GAGNNNNNCTC 4 cut(s) 240, 272, 532, 564
BpmI CTGGAG 2 cut(s) 463, 1046
Bpu10I CCTNAGC 1 cut(s) 244
BpuMI CCSGG 2 cut(s) 970, 996
BsaAI YACGTR 2 cut(s) 182, 536
BsaHI GRCGYC 3 cut(s) 5, 1011, 1143
BsaI GGTCTC 3 cut(s) 513, 595, 844
BsaJI CCNNGG 2 cut(s) 295, 565
BsaWI WCCGGW 4 cut(s) 283, 656, 809, 1114
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 1 cut(s) 286
Bse118I RCCGGY 3 cut(s) 283, 311, 815
Bse1I ACTGG 3 cut(s) 421, 499, 802
BseBI CCWGG 2 cut(s) 1247, 1265
BseDI CCNNGG 2 cut(s) 295, 565
BseGI GGATG 1 cut(s) 90
BseLI CCNNNNNNNGG 1 cut(s) 286
BseMII CTCAG 4 cut(s) 258, 713, 1064, 1265
BseNI ACTGG 3 cut(s) 421, 499, 802
BseRI GAGGAG 2 cut(s) 118, 385
BseXI GCAGC 4 cut(s) 327, 767, 972, 1043
BseYI CCCAGC 1 cut(s) 385
Bsh1236I CGCG 3 cut(s) 99, 156, 190
Bsh1285I CGRYCG 1 cut(s) 148
BshFI GGCC 7 cut(s) 486, 582, 621, 681, 801, 881, 932
BshNI GGYRCC 4 cut(s) 635, 812, 818, 1142
BshTI ACCGGT 1 cut(s) 283
BsiEI CGRYCG 1 cut(s) 148
BsiHKAI GWGCWC 1 cut(s) 245
BsiHKCI CYCGRG 2 cut(s) 238, 875
BsiSI CCGG 9 cut(s) 284, 312, 657, 810, 816, 939, 969, 996, 1115
BslFI GGGAC 1 cut(s) 985
BslI CCNNNNNNNGG 1 cut(s) 286
BsmAI GTCTC 7 cut(s) 155, 271, 513, 595, 811, 844, 1082
BsmBI CGTCTC 2 cut(s) 155, 271
BsmFI GGGAC 1 cut(s) 985
BsnI GGCC 7 cut(s) 486, 582, 621, 681, 801, 881, 932
Bso31I GGTCTC 3 cut(s) 513, 595, 844
BsoBI CYCGRG 2 cut(s) 238, 875
Bsp1286I GDGCHC 1 cut(s) 245
Bsp143I GATC 7 cut(s) 85, 145, 234, 569, 663, 1057, 1254
BspANI GGCC 7 cut(s) 486, 582, 621, 681, 801, 881, 932
BspCNI CTCAG 4 cut(s) 257, 712, 1065, 1264
BspFNI CGCG 3 cut(s) 99, 156, 190
BspHI TCATGA 1 cut(s) 258
BspMI ACCTGC 2 cut(s) 464, 503
BspPI GGATC 2 cut(s) 577, 1052
BspT107I GGYRCC 4 cut(s) 635, 812, 818, 1142
BspTNI GGTCTC 3 cut(s) 513, 595, 844
BsrBI CCGCTC 3 cut(s) 171, 525, 1048
BsrFI RCCGGY 3 cut(s) 283, 311, 815
BsrI ACTGG 3 cut(s) 421, 499, 802
BssAI RCCGGY 3 cut(s) 283, 311, 815
BssECI CCNNGG 2 cut(s) 295, 565
BssMI GATC 7 cut(s) 85, 145, 234, 569, 663, 1057, 1254
BssNI GRCGYC 3 cut(s) 5, 1011, 1143
Bst2UI CCWGG 2 cut(s) 1247, 1265
Bst4CI ACNGT 5 cut(s) 67, 82, 512, 823, 1294
Bst6I CTCTTC 2 cut(s) 36, 383
BstACI GRCGYC 3 cut(s) 5, 1011, 1143
BstAPI GCANNNNNTGC 2 cut(s) 345, 354
BstBAI YACGTR 2 cut(s) 182, 536
BstC8I GCNNGC 5 cut(s) 22, 341, 350, 580, 817
BstDEI CTNAG 5 cut(s) 244, 699, 1073, 1251, 1320
BstF5I GGATG 1 cut(s) 90
BstFNI CGCG 3 cut(s) 99, 156, 190
BstH2I RGCGCY 1 cut(s) 1146
BstHHI GCGC 4 cut(s) 192, 461, 1129, 1145
BstKTI GATC 7 cut(s) 88, 148, 237, 572, 666, 1060, 1257
BstMAI GTCTC 7 cut(s) 155, 271, 513, 595, 811, 844, 1082
BstMBI GATC 7 cut(s) 85, 145, 234, 569, 663, 1057, 1254
BstMCI CGRYCG 1 cut(s) 148
BstNI CCWGG 2 cut(s) 1247, 1265
BstNSI RCATGY 1 cut(s) 24
BstSCI CCNGG 4 cut(s) 968, 994, 1245, 1263
BstUI CGCG 3 cut(s) 99, 156, 190
BstV1I GCAGC 4 cut(s) 327, 767, 972, 1043
BstV2I GAAGAC 1 cut(s) 601
BstXI CCANNNNNNTGG 1 cut(s) 629
BsuRI GGCC 7 cut(s) 486, 582, 621, 681, 801, 881, 932
BtgZI GCGATG 1 cut(s) 160
BtsCI GGATG 1 cut(s) 90
BtsI GCAGTG 1 cut(s) 359
BtsIMutI CAGTG 2 cut(s) 48, 359
BveI ACCTGC 2 cut(s) 464, 503
Cac8I GCNNGC 5 cut(s) 22, 341, 350, 580, 817
CciI TCATGA 1 cut(s) 258
CfoI GCGC 4 cut(s) 192, 461, 1129, 1145
Cfr10I RCCGGY 3 cut(s) 283, 311, 815
Cfr13I GGNCC 3 cut(s) 330, 654, 680
CseI GACGC 1 cut(s) 991
Csp6I GTAC 2 cut(s) 502, 792
CspAI ACCGGT 1 cut(s) 283
CviAII CATG 6 cut(s) 21, 259, 345, 432, 623, 1210
CviQI GTAC 2 cut(s) 502, 792
DdeI CTNAG 5 cut(s) 244, 699, 1073, 1251, 1320
DinI GGCGCC 1 cut(s) 1144
DpnI GATC 7 cut(s) 87, 147, 236, 571, 665, 1059, 1256
DpnII GATC 7 cut(s) 85, 145, 234, 569, 663, 1057, 1254
EaeI YGGCCR 2 cut(s) 484, 619
Eam1104I CTCTTC 2 cut(s) 36, 383
EarI CTCTTC 2 cut(s) 36, 383
Ecl136II GAGCTC 1 cut(s) 243
Eco24I GRGCYC 1 cut(s) 245
Eco31I GGTCTC 3 cut(s) 513, 595, 844
Eco47I GGWCC 2 cut(s) 330, 654
Eco53kI GAGCTC 1 cut(s) 243
Eco72I CACGTG 2 cut(s) 182, 536
Eco88I CYCGRG 2 cut(s) 238, 875
EcoICRI GAGCTC 1 cut(s) 243
EcoRII CCWGG 2 cut(s) 1245, 1263
EcoT38I GRGCYC 1 cut(s) 245
EgeI GGCGCC 1 cut(s) 1144
EheI GGCGCC 1 cut(s) 1144
Esp3I CGTCTC 2 cut(s) 155, 271
FaeI CATG 6 cut(s) 24, 262, 348, 435, 626, 1213
FalI AAGNNNNNCTT 4 cut(s) 341, 373, 593, 625
FaqI GGGAC 1 cut(s) 985
FatI CATG 6 cut(s) 20, 258, 344, 431, 622, 1209
FauI CCCGC 1 cut(s) 1041
FokI GGATG 1 cut(s) 77
FriOI GRGCYC 1 cut(s) 245
FspBI CTAG 4 cut(s) 545, 671, 1062, 1280
GlaI GCGC 4 cut(s) 191, 460, 1128, 1144
GsaI CCCAGC 1 cut(s) 389
GsuI CTGGAG 2 cut(s) 463, 1046
HaeII RGCGCY 1 cut(s) 1146
HaeIII GGCC 7 cut(s) 486, 582, 621, 681, 801, 881, 932
HapII CCGG 9 cut(s) 284, 312, 657, 810, 816, 939, 969, 996, 1115
HgaI GACGC 1 cut(s) 991
HhaI GCGC 4 cut(s) 192, 461, 1129, 1145
Hin1I GRCGYC 3 cut(s) 5, 1011, 1143
Hin1II CATG 6 cut(s) 24, 262, 348, 435, 626, 1213
Hin6I GCGC 4 cut(s) 190, 459, 1127, 1143
HinP1I GCGC 4 cut(s) 190, 459, 1127, 1143
HincII GTYRAC 2 cut(s) 718, 981
HindII GTYRAC 2 cut(s) 718, 981
HpaI GTTAAC 1 cut(s) 718
HpaII CCGG 9 cut(s) 284, 312, 657, 810, 816, 939, 969, 996, 1115
HphI GGTGA 2 cut(s) 70, 553
Hpy166II GTNNAC 2 cut(s) 718, 981
Hpy188III TCNNGA 6 cut(s) 238, 246, 259, 328, 551, 1025
Hpy8I GTNNAC 2 cut(s) 718, 981
Hpy99I CGWCG 8 cut(s) 86, 275, 647, 938, 1010, 1013, 1016, 1151
HpyAV CCTTC 6 cut(s) 127, 172, 568, 649, 868, 1309
HpyCH4III ACNGT 5 cut(s) 67, 82, 512, 823, 1294
HpyCH4IV ACGT 7 cut(s) 181, 264, 535, 977, 1011, 1149, 1227
HpyCH4V TGCA 5 cut(s) 20, 339, 348, 1043, 1317
HpyF3I CTNAG 5 cut(s) 244, 699, 1073, 1251, 1320
HpySE526I ACGT 7 cut(s) 181, 264, 535, 977, 1011, 1149, 1227
Hsp92I GRCGYC 3 cut(s) 5, 1011, 1143
Hsp92II CATG 6 cut(s) 24, 262, 348, 435, 626, 1213
HspAI GCGC 4 cut(s) 190, 459, 1127, 1143
KasI GGCGCC 1 cut(s) 1142
KroI GCCGGC 1 cut(s) 815
KroNI GCCGGC 1 cut(s) 817
KspAI GTTAAC 1 cut(s) 718
Kzo9I GATC 7 cut(s) 85, 145, 234, 569, 663, 1057, 1254
LmnI GCTCC 6 cut(s) 176, 200, 218, 440, 530, 993
Lsp1109I GCAGC 4 cut(s) 327, 767, 972, 1043
MaeI CTAG 4 cut(s) 545, 671, 1062, 1280
MaeII ACGT 7 cut(s) 181, 264, 535, 977, 1011, 1149, 1227
MaeIII GTNAC 5 cut(s) 6, 67, 512, 903, 950
MalI GATC 7 cut(s) 87, 147, 236, 571, 665, 1059, 1256
MbiI CCGCTC 3 cut(s) 171, 525, 1048
MboI GATC 7 cut(s) 85, 145, 234, 569, 663, 1057, 1254
MboII GAAGA 5 cut(s) 23, 370, 601, 613, 1199
MhlI GDGCHC 1 cut(s) 245
Mly113I GGCGCC 1 cut(s) 1143
MmeI TCCRAC 3 cut(s) 253, 462, 871
MroNI GCCGGC 1 cut(s) 815
MseI TTAA 4 cut(s) 717, 1038, 1086, 1152
MslI CAYNNNNRTG 1 cut(s) 627
MspA1I CMGCKG 1 cut(s) 483
MspI CCGG 9 cut(s) 284, 312, 657, 810, 816, 939, 969, 996, 1115
MspR9I CCNGG 4 cut(s) 970, 996, 1247, 1265
MvaI CCWGG 2 cut(s) 1247, 1265
MvnI CGCG 3 cut(s) 99, 156, 190
NaeI GCCGGC 1 cut(s) 817
NarI GGCGCC 1 cut(s) 1143
NciI CCSGG 2 cut(s) 970, 996
NdeII GATC 7 cut(s) 85, 145, 234, 569, 663, 1057, 1254
NgoMIV GCCGGC 1 cut(s) 815
NlaIII CATG 6 cut(s) 24, 262, 348, 435, 626, 1213
NmeAIII GCCGAG 1 cut(s) 496
NmuCI GTSAC 1 cut(s) 6
NspI RCATGY 1 cut(s) 24
PaeI GCATGC 1 cut(s) 24
PaeR7I CTCGAG 2 cut(s) 238, 875
PagI TCATGA 1 cut(s) 258
PaqCI CACCTGC 2 cut(s) 464, 503
PcsI WCGNNNNNNNCGW 1 cut(s) 1011
PdiI GCCGGC 1 cut(s) 817
PfeI GAWTC 3 cut(s) 300, 999, 1213
PflFI GACNNNGTC 1 cut(s) 1010
PfoI TCCNGGA 1 cut(s) 968
PinAI ACCGGT 1 cut(s) 283
Ple19I CGATCG 1 cut(s) 148
PluTI GGCGCC 1 cut(s) 1146
PmaCI CACGTG 2 cut(s) 182, 536
PmlI CACGTG 2 cut(s) 182, 536
Ppu21I YACGTR 2 cut(s) 182, 536
PshBI ATTAAT 1 cut(s) 1038
PsiI TTATAA 1 cut(s) 1121
Psp124BI GAGCTC 1 cut(s) 245
Psp6I CCWGG 2 cut(s) 1245, 1263
PspCI CACGTG 2 cut(s) 182, 536
PspFI CCCAGC 1 cut(s) 385
PspGI CCWGG 2 cut(s) 1245, 1263
PspPI GGNCC 3 cut(s) 330, 654, 680
PspXI VCTCGAGB 1 cut(s) 875
PsyI GACNNNGTC 1 cut(s) 1010
PvuI CGATCG 1 cut(s) 148
RsaI GTAC 2 cut(s) 503, 793
RsaNI GTAC 2 cut(s) 502, 792
RseI CAYNNNNRTG 1 cut(s) 627
SacI GAGCTC 1 cut(s) 245
SaqAI TTAA 4 cut(s) 717, 1038, 1086, 1152
Sau3AI GATC 7 cut(s) 85, 145, 234, 569, 663, 1057, 1254
Sau96I GGNCC 3 cut(s) 330, 654, 680
ScrFI CCNGG 4 cut(s) 970, 996, 1247, 1265
SduI GDGCHC 1 cut(s) 245
SfoI GGCGCC 1 cut(s) 1144
Sfr274I CTCGAG 2 cut(s) 238, 875
SgrAI CRCCGGYG 1 cut(s) 283
SinI GGWCC 2 cut(s) 330, 654
SlaI CTCGAG 2 cut(s) 238, 875
SmiMI CAYNNNNRTG 1 cut(s) 627
SmlI CTYRAG 2 cut(s) 238, 875
SmoI CTYRAG 2 cut(s) 238, 875
SphI GCATGC 1 cut(s) 24
SspDI GGCGCC 1 cut(s) 1142
SspMI CTAG 4 cut(s) 545, 671, 1062, 1280
SstI GAGCTC 1 cut(s) 245
StyD4I CCNGG 4 cut(s) 968, 994, 1245, 1263
TaaI ACNGT 5 cut(s) 67, 82, 512, 823, 1294
TaiI ACGT 7 cut(s) 184, 267, 538, 980, 1014, 1152, 1230
TatI WGTACW 1 cut(s) 501
TauI GCSGC 7 cut(s) 470, 486, 621, 636, 681, 1140, 1143
TfiI GAWTC 3 cut(s) 300, 999, 1213
Tru1I TTAA 4 cut(s) 717, 1038, 1086, 1152
Tru9I TTAA 4 cut(s) 717, 1038, 1086, 1152
TscAI CASTG 2 cut(s) 48, 359
TseFI GTSAC 1 cut(s) 6
TseI GCWGC 4 cut(s) 315, 755, 985, 1031
Tsp45I GTSAC 1 cut(s) 6
TspDTI ATGAA 3 cut(s) 275, 639, 682
TspGWI ACGGA 4 cut(s) 259, 531, 735, 1206
TspRI CASTG 2 cut(s) 48, 359
Tth111I GACNNNGTC 1 cut(s) 1010
VpaK11BI GGWCC 2 cut(s) 330, 654
VspI ATTAAT 1 cut(s) 1038
XceI RCATGY 1 cut(s) 24
XhoI CTCGAG 2 cut(s) 238, 875
XspI CTAG 4 cut(s) 545, 671, 1062, 1280
ZraI GACGTC 1 cut(s) 1012
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.