FvH4_5g25440

Pentatricopeptide repeat domain

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
16935568 .. 16937714
2147 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g25440.t1

Sequence Viewer

Length: 1416 bp
ATGGAATCCGTATTCGTTGGTGGAAATACCATTTTGTCCCCACATACTCTTGCAAGGAATGGTAGGGTGGCTTTCATGGTGCCTCCTAGTAGTACTAGGAGAAACCTCCCCAAGAACCTTCGCTATCCGCGGCAAGCAAAGCATCCTCCTGATCTGGGAGTCAATCAGTTCTTGAAGAAGACAAGCAATGATGCCAGTGAGCCAGTTCAAACAGAGTTCCCTGAGGAGGAGGAAGAAAAATATACTGAAAACGGCGACATTGTTTGGGAATCAGAAGAAATTGAAGCTATTGAGTCACTTTTCCGAGGGAGGATACCCCAAAAGCCGGGAAGTTTGAATAGGCAGAGGCCTCTACCGCTGCCACTGCCTTACAAGGTTCGACCTTTGAGACTTCCTTCGCCAAAGAAAAATGCTGTTAAGATTGGACCCATATCTAAGCAAGTGTACAAGAACCCCAATGCCCTTGTTGGGTTGGCAAGGGAAATTAGAAGCCTTGGAGAAGATAAAGATGTGGGGATAGTTCTGAACAAGAGGGTTCAGTTTCTGCGAAAAGGGTCTCTCTCCATGACAATACGGGAATTGGGGCACATGGGGCTTCCTGAGAGGGCTCTGCAGACCTTCTGTTGGGCTCAGAAACAGCCTCAGCTATACCCTGACGACAGGATTCTGAGTTCGACGGTGGAGGTCCTGGCAAGGAACCATGAGCTCAAACTGCCGTTTAATTTGGACAAGTTCACTAGCTCTGCTAATCGTGGTGTGATTGAGGCAATGGTGAGAGGTTTCATCAAAGGAGGAAGCTTGCATCTAGCTTGGAAGTTAGTATCGATAGCCAAAGATAATCAAAGGAAGCTGGATCCTAGCTTGTACGCAAAGCTAATAGTAGAGTTTGGGAAAAACCCTGATAAACATATGGTTGTGATGACCTTACTGGAGGAGCTTGGAGAAAGAGAAGACCTGAAATTAAGCCAACAGGACTGTACTTCTATTATGAAGGTGTGCATTAGGCTAGGGAAATTTGAAGTCGTTGAGAGTGTTTATGATTGGTTTAGACAATCTGGACATGATCCAACTGTCGTAGTTTACACTACTTTGATTCACAGCCGCTACTCCGAGAAGAGATACAAGGCGGCCTTGGCTGTGGTTTGGGAGATGGAGGCTTCAAACTGTCTCTTTGACTTTCCAGCTTATCGAGTTGTAATAAAAGTTTTTGTTGCTCTCAATGATCTTGCAAGGGCTGCAAGATATTTTTCGAAGCTTAAAGAAGCAGGTTTCACTCCGACATATGACATATACCGGGATATGATCAGAATTTACATGGTTTCTGGGCGGCTAGCCAAGTGTAGGGAGATCTGCAAGGAGGTAGAGATGGGAGGACTGAAGTTAGATCAAGAAACAATGTCTCATTTGTTGCAATAA

Protein Analysis

472

Amino Acids

53.76

Weight (kDa)

9.37

Isoelectric Point (pI)

44.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013270)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1256
AccB1I GGYRCC 1 cut(s) 79
AccII CGCG 1 cut(s) 130
AciI CCGC 6 cut(s) 128, 130, 356, 1102, 1127, 1327
AclWI GGATC 3 cut(s) 848, 861, 1058
AcsI RAATTY 2 cut(s) 1013, 1308
AcuI CTGAAG 1 cut(s) 1397
AfaI GTAC 4 cut(s) 94, 446, 866, 979
AfiI CCNNNNNNNGG 6 cut(s) 155, 226, 325, 468, 624, 1341
AgsI TTSAA 6 cut(s) 175, 209, 284, 337, 1019, 1161
AjnI CCWGG 1 cut(s) 687
AloI GAACNNNNNNTCC 2 cut(s) 655, 687
Alw21I GWGCWC 1 cut(s) 708
Alw26I GTCTC 4 cut(s) 382, 561, 1172, 1404
AlwI GGATC 3 cut(s) 848, 861, 1058
AlwNI CAGNNNCTG 1 cut(s) 544
AoxI GGCC 2 cut(s) 347, 1128
ApeKI GCWGC 2 cut(s) 358, 1235
ApoI RAATTY 2 cut(s) 1013, 1308
AspS9I GGNCC 2 cut(s) 425, 685
AsuC2I CCSGG 2 cut(s) 327, 1295
AsuHPI GGTGA 1 cut(s) 784
AsuII TTCGAA 1 cut(s) 1250
AsuNHI GCTAGC 1 cut(s) 1330
AvaII GGWCC 2 cut(s) 425, 685
AxyI CCTNAGG 1 cut(s) 222
BaeGI GKGCMC 1 cut(s) 588
BamHI GGATCC 1 cut(s) 853
BanI GGYRCC 1 cut(s) 79
BanII GRGCYC 3 cut(s) 610, 631, 708
BbsI GAAGAC 2 cut(s) 185, 957
Bbv12I GWGCWC 1 cut(s) 708
BbvCI CCTCAGC 1 cut(s) 642
BbvI GCAGC 2 cut(s) 345, 1222
BccI CCATC 2 cut(s) 1144, 1360
BceAI ACGGC 2 cut(s) 268, 700
BciT130I CCWGG 1 cut(s) 689
BciVI GTATCC 1 cut(s) 306
BclI TGATCA 1 cut(s) 1302
BcnI CCSGG 2 cut(s) 327, 1295
BcoDI GTCTC 4 cut(s) 382, 561, 1172, 1404
BfaI CTAG 7 cut(s) 87, 96, 738, 806, 858, 1007, 1331
BfmI CTRYAG 1 cut(s) 611
BfuAI ACCTGC 1 cut(s) 1256
BfuI GTATCC 1 cut(s) 306
BglII AGATCT 1 cut(s) 1347
BisI GCNGC 6 cut(s) 131, 359, 1102, 1128, 1236, 1328
BlsI GCNGC 6 cut(s) 132, 360, 1103, 1129, 1237, 1329
BmcAI AGTACT 1 cut(s) 94
Bme1390I CCNGG 3 cut(s) 327, 689, 1295
Bme18I GGWCC 2 cut(s) 425, 685
BmgT120I GGNCC 2 cut(s) 425, 685
BmiI GGNNCC 4 cut(s) 81, 427, 698, 855
BmrFI CCNGG 3 cut(s) 327, 689, 1295
BmsI GCATC 3 cut(s) 151, 181, 811
BmtI GCTAGC 1 cut(s) 1334
BpiI GAAGAC 2 cut(s) 185, 957
BpmI CTGGAG 1 cut(s) 950
Bpu10I CCTNAGC 1 cut(s) 642
Bpu14I TTCGAA 1 cut(s) 1250
BpuMI CCSGG 2 cut(s) 327, 1295
Bsa29I ATCGAT 1 cut(s) 824
BsaI GGTCTC 1 cut(s) 561
BsaJI CCNNGG 4 cut(s) 128, 304, 493, 1131
Bsc4I CCNNNNNNNGG 6 cut(s) 155, 226, 325, 468, 624, 1341
Bse1I ACTGG 3 cut(s) 195, 203, 933
Bse21I CCTNAGG 1 cut(s) 222
Bse3DI GCAATG 2 cut(s) 193, 774
BseBI CCWGG 1 cut(s) 689
BseCI ATCGAT 1 cut(s) 824
BseDI CCNNGG 4 cut(s) 128, 304, 493, 1131
BseGI GGATG 1 cut(s) 142
BseLI CCNNNNNNNGG 6 cut(s) 155, 226, 325, 468, 624, 1341
BseMI GCAATG 2 cut(s) 193, 774
BseMII CTCAG 5 cut(s) 213, 591, 644, 656, 659
BseNI ACTGG 3 cut(s) 195, 203, 933
BseRI GAGGAG 3 cut(s) 239, 242, 947
BseSI GKGCMC 1 cut(s) 588
BseXI GCAGC 2 cut(s) 345, 1222
Bsh1236I CGCG 1 cut(s) 130
BshFI GGCC 2 cut(s) 349, 1130
BshNI GGYRCC 1 cut(s) 79
BshVI ATCGAT 1 cut(s) 824
BsiHKAI GWGCWC 1 cut(s) 708
BsiSI CCGG 2 cut(s) 326, 1294
BslFI GGGAC 1 cut(s) 22
BslI CCNNNNNNNGG 6 cut(s) 155, 226, 325, 468, 624, 1341
BsmAI GTCTC 4 cut(s) 382, 561, 1172, 1404
BsmFI GGGAC 1 cut(s) 22
BsnI GGCC 2 cut(s) 349, 1130
Bso31I GGTCTC 1 cut(s) 561
Bsp119I TTCGAA 1 cut(s) 1250
Bsp1286I GDGCHC 4 cut(s) 588, 610, 631, 708
Bsp1407I TGTACA 1 cut(s) 444
Bsp143I GATC 7 cut(s) 151, 853, 1063, 1222, 1302, 1347, 1384
BspACI CCGC 6 cut(s) 128, 130, 356, 1102, 1127, 1327
BspANI GGCC 2 cut(s) 349, 1130
BspCNI CTCAG 5 cut(s) 214, 592, 643, 655, 660
BspDI ATCGAT 1 cut(s) 824
BspFNI CGCG 1 cut(s) 130
BspLI GGNNCC 4 cut(s) 81, 427, 698, 855
BspMAI CTGCAG 1 cut(s) 615
BspMI ACCTGC 1 cut(s) 1256
BspOI GCTAGC 1 cut(s) 1334
BspPI GGATC 3 cut(s) 848, 861, 1058
BspT104I TTCGAA 1 cut(s) 1250
BspT107I GGYRCC 1 cut(s) 79
BspTNI GGTCTC 1 cut(s) 561
BsrDI GCAATG 2 cut(s) 193, 774
BsrGI TGTACA 1 cut(s) 444
BsrI ACTGG 3 cut(s) 195, 203, 933
BssECI CCNNGG 4 cut(s) 128, 304, 493, 1131
BssMI GATC 7 cut(s) 151, 853, 1063, 1222, 1302, 1347, 1384
BssT1I CCWWGG 2 cut(s) 493, 1131
Bst2UI CCWGG 1 cut(s) 689
Bst4CI ACNGT 4 cut(s) 679, 977, 1072, 1166
Bst6I CTCTTC 1 cut(s) 1109
BstAPI GCANNNNNTGC 1 cut(s) 1235
BstAUI TGTACA 1 cut(s) 444
BstBI TTCGAA 1 cut(s) 1250
BstC8I GCNNGC 3 cut(s) 135, 800, 1332
BstDEI CTNAG 6 cut(s) 222, 435, 600, 630, 642, 668
BstDSI CCRYGG 1 cut(s) 128
BstF5I GGATG 1 cut(s) 142
BstFNI CGCG 1 cut(s) 130
BstKTI GATC 7 cut(s) 154, 856, 1066, 1225, 1305, 1350, 1387
BstMAI GTCTC 4 cut(s) 382, 561, 1172, 1404
BstMBI GATC 7 cut(s) 151, 853, 1063, 1222, 1302, 1347, 1384
BstMWI GCNNNNNNNGC 7 cut(s) 139, 355, 364, 592, 712, 1133, 1235
BstNI CCWGG 1 cut(s) 689
BstSCI CCNGG 3 cut(s) 325, 687, 1293
BstSFI CTRYAG 1 cut(s) 611
BstSLI GKGCMC 1 cut(s) 588
BstUI CGCG 1 cut(s) 130
BstV1I GCAGC 2 cut(s) 345, 1222
BstV2I GAAGAC 2 cut(s) 185, 957
BstX2I RGATCY 2 cut(s) 853, 1347
BstYI RGATCY 2 cut(s) 853, 1347
Bsu15I ATCGAT 1 cut(s) 824
Bsu36I CCTNAGG 1 cut(s) 222
BsuI GTATCC 1 cut(s) 306
BsuRI GGCC 2 cut(s) 349, 1130
BsuTUI ATCGAT 1 cut(s) 824
BtgI CCRYGG 1 cut(s) 128
BtsCI GGATG 1 cut(s) 142
BtsI GCAGTG 1 cut(s) 362
BtsIMutI CAGTG 2 cut(s) 202, 362
BveI ACCTGC 1 cut(s) 1256
Cac8I GCNNGC 3 cut(s) 135, 800, 1332
CaiI CAGNNNCTG 1 cut(s) 544
Cfr13I GGNCC 2 cut(s) 425, 685
Cfr42I CCGCGG 1 cut(s) 131
ClaI ATCGAT 1 cut(s) 824
Csp6I GTAC 4 cut(s) 93, 445, 865, 978
CviAII CATG 6 cut(s) 76, 565, 589, 701, 1061, 1315
CviQI GTAC 4 cut(s) 93, 445, 865, 978
DdeI CTNAG 6 cut(s) 222, 435, 600, 630, 642, 668
DpnI GATC 7 cut(s) 153, 855, 1065, 1224, 1304, 1349, 1386
DpnII GATC 7 cut(s) 151, 853, 1063, 1222, 1302, 1347, 1384
Eam1104I CTCTTC 1 cut(s) 1109
EarI CTCTTC 1 cut(s) 1109
Ecl136II GAGCTC 1 cut(s) 706
Eco130I CCWWGG 2 cut(s) 493, 1131
Eco147I AGGCCT 1 cut(s) 349
Eco24I GRGCYC 3 cut(s) 610, 631, 708
Eco31I GGTCTC 1 cut(s) 561
Eco47I GGWCC 2 cut(s) 425, 685
Eco53kI GAGCTC 1 cut(s) 706
Eco57I CTGAAG 1 cut(s) 1397
Eco81I CCTNAGG 1 cut(s) 222
EcoICRI GAGCTC 1 cut(s) 706
EcoO109I RGGNCCY 1 cut(s) 685
EcoRII CCWGG 1 cut(s) 687
EcoT14I CCWWGG 2 cut(s) 493, 1131
EcoT38I GRGCYC 3 cut(s) 610, 631, 708
ErhI CCWWGG 2 cut(s) 493, 1131
FaeI CATG 6 cut(s) 79, 568, 592, 704, 1064, 1318
FalI AAGNNNNNCTT 2 cut(s) 1115, 1147
FaqI GGGAC 1 cut(s) 22
FatI CATG 6 cut(s) 75, 564, 588, 700, 1060, 1314
FauNDI CATATG 2 cut(s) 909, 1282
FbaI TGATCA 1 cut(s) 1302
Fnu4HI GCNGC 6 cut(s) 131, 359, 1102, 1128, 1236, 1328
FokI GGATG 1 cut(s) 129
FriOI GRGCYC 3 cut(s) 610, 631, 708
Fsp4HI GCNGC 6 cut(s) 131, 359, 1102, 1128, 1236, 1328
FspBI CTAG 7 cut(s) 87, 96, 738, 806, 858, 1007, 1331
GluI GCNGC 6 cut(s) 131, 359, 1102, 1128, 1236, 1328
GsuI CTGGAG 1 cut(s) 950
HaeIII GGCC 2 cut(s) 349, 1130
HapII CCGG 2 cut(s) 326, 1294
Hin1II CATG 6 cut(s) 79, 568, 592, 704, 1064, 1318
HindIII AAGCTT 2 cut(s) 796, 1253
HinfI GANTC 6 cut(s) 5, 159, 269, 293, 664, 1093
HpaII CCGG 2 cut(s) 326, 1294
HphI GGTGA 1 cut(s) 784
Hpy166II GTNNAC 3 cut(s) 445, 735, 1081
Hpy188I TCNGA 8 cut(s) 274, 305, 525, 633, 669, 1111, 1278, 1307
Hpy188III TCNNGA 5 cut(s) 149, 172, 599, 1056, 1388
Hpy8I GTNNAC 3 cut(s) 445, 735, 1081
Hpy99I CGWCG 1 cut(s) 679
HpyAV CCTTC 4 cut(s) 128, 405, 628, 985
HpyCH4III ACNGT 4 cut(s) 679, 977, 1072, 1166
HpyCH4V TGCA 8 cut(s) 53, 613, 802, 999, 1229, 1238, 1353, 1411
HpyF10VI GCNNNNNNNGC 7 cut(s) 139, 355, 364, 592, 712, 1133, 1235
HpyF3I CTNAG 6 cut(s) 222, 435, 600, 630, 642, 668
Hsp92II CATG 6 cut(s) 79, 568, 592, 704, 1064, 1318
Ksp22I TGATCA 1 cut(s) 1302
KspI CCGCGG 1 cut(s) 131
Kzo9I GATC 7 cut(s) 151, 853, 1063, 1222, 1302, 1347, 1384
LmnI GCTCC 1 cut(s) 934
Lsp1109I GCAGC 2 cut(s) 345, 1222
LweI GCATC 3 cut(s) 151, 181, 811
MaeI CTAG 7 cut(s) 87, 96, 738, 806, 858, 1007, 1331
MaeIII GTNAC 1 cut(s) 294
MalI GATC 7 cut(s) 153, 855, 1065, 1224, 1304, 1349, 1386
MboI GATC 7 cut(s) 151, 853, 1063, 1222, 1302, 1347, 1384
MboII GAAGA 7 cut(s) 187, 190, 245, 287, 512, 962, 1126
MflI RGATCY 2 cut(s) 853, 1347
MhlI GDGCHC 4 cut(s) 588, 610, 631, 708
MluCI AATT 7 cut(s) 279, 483, 578, 721, 959, 1013, 1308
MlyI GAGTC 2 cut(s) 168, 302
MmeI TCCRAC 2 cut(s) 1091, 1301
MseI TTAA 4 cut(s) 417, 720, 962, 1257
MspA1I CMGCKG 2 cut(s) 130, 358
MspI CCGG 2 cut(s) 326, 1294
MspR9I CCNGG 3 cut(s) 327, 689, 1295
MvaI CCWGG 1 cut(s) 689
MvnI CGCG 1 cut(s) 130
MwoI GCNNNNNNNGC 7 cut(s) 139, 355, 364, 592, 712, 1133, 1235
NciI CCSGG 2 cut(s) 327, 1295
NdeI CATATG 2 cut(s) 909, 1282
NdeII GATC 7 cut(s) 151, 853, 1063, 1222, 1302, 1347, 1384
NheI GCTAGC 1 cut(s) 1330
NlaIII CATG 6 cut(s) 79, 568, 592, 704, 1064, 1318
NlaIV GGNNCC 4 cut(s) 81, 427, 698, 855
NmuCI GTSAC 1 cut(s) 294
NspV TTCGAA 1 cut(s) 1250
PceI AGGCCT 1 cut(s) 349
PfeI GAWTC 4 cut(s) 5, 269, 664, 1093
PkrI GCNGC 6 cut(s) 132, 360, 1103, 1129, 1237, 1329
PleI GAGTC 2 cut(s) 167, 301
PpsI GAGTC 2 cut(s) 167, 301
PpuMI RGGWCCY 1 cut(s) 685
Psp124BI GAGCTC 1 cut(s) 708
Psp5II RGGWCCY 1 cut(s) 685
Psp6I CCWGG 1 cut(s) 687
PspGI CCWGG 1 cut(s) 687
PspN4I GGNNCC 4 cut(s) 81, 427, 698, 855
PspPI GGNCC 2 cut(s) 425, 685
PspPPI RGGWCCY 1 cut(s) 685
PstI CTGCAG 1 cut(s) 615
PstNI CAGNNNCTG 1 cut(s) 544
PsuI RGATCY 2 cut(s) 853, 1347
RsaI GTAC 4 cut(s) 94, 446, 866, 979
RsaNI GTAC 4 cut(s) 93, 445, 865, 978
SacI GAGCTC 1 cut(s) 708
SacII CCGCGG 1 cut(s) 131
SaqAI TTAA 4 cut(s) 417, 720, 962, 1257
SatI GCNGC 6 cut(s) 131, 359, 1102, 1128, 1236, 1328
Sau3AI GATC 7 cut(s) 151, 853, 1063, 1222, 1302, 1347, 1384
Sau96I GGNCC 2 cut(s) 425, 685
ScaI AGTACT 1 cut(s) 94
SchI GAGTC 2 cut(s) 168, 302
ScrFI CCNGG 3 cut(s) 327, 689, 1295
SduI GDGCHC 4 cut(s) 588, 610, 631, 708
SfaNI GCATC 3 cut(s) 151, 181, 811
SfcI CTRYAG 1 cut(s) 611
Sfr303I CCGCGG 1 cut(s) 131
SfuI TTCGAA 1 cut(s) 1250
SgrBI CCGCGG 1 cut(s) 131
SinI GGWCC 2 cut(s) 425, 685
Sse9I AATT 7 cut(s) 279, 483, 578, 721, 959, 1013, 1308
SseBI AGGCCT 1 cut(s) 349
SsiI CCGC 6 cut(s) 128, 130, 356, 1102, 1127, 1327
SspMI CTAG 7 cut(s) 87, 96, 738, 806, 858, 1007, 1331
SstI GAGCTC 1 cut(s) 708
StuI AGGCCT 1 cut(s) 349
StyD4I CCNGG 3 cut(s) 325, 687, 1293
StyI CCWWGG 2 cut(s) 493, 1131
TaaI ACNGT 4 cut(s) 679, 977, 1072, 1166
TaqI TCGA 5 cut(s) 379, 674, 824, 1189, 1250
TasI AATT 7 cut(s) 279, 483, 578, 721, 959, 1013, 1308
TatI WGTACW 3 cut(s) 92, 444, 977
TauI GCSGC 4 cut(s) 133, 1104, 1130, 1330
TfiI GAWTC 4 cut(s) 5, 269, 664, 1093
Tru1I TTAA 4 cut(s) 417, 720, 962, 1257
Tru9I TTAA 4 cut(s) 417, 720, 962, 1257
TscAI CASTG 2 cut(s) 202, 369
TseFI GTSAC 1 cut(s) 294
TseI GCWGC 2 cut(s) 358, 1235
Tsp45I GTSAC 1 cut(s) 294
TspDTI ATGAA 3 cut(s) 64, 772, 1004
TspRI CASTG 2 cut(s) 202, 369
VpaK11BI GGWCC 2 cut(s) 425, 685
XapI RAATTY 2 cut(s) 1013, 1308
XspI CTAG 7 cut(s) 87, 96, 738, 806, 858, 1007, 1331
ZrmI AGTACT 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.