Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0013270

Physical Location & Seq

Genomic Coordinates Forward (+)

1033119 .. 1038615

Gene Structure 5497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G010100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1440 bp

ATGGATTGCGCATTCTTGGGTATAAATCCCATTTTGTTCCAAGAAAGTTTTGCAGGAAATGGGAATGGAAATGGTAGGGTGTCTCTGATGGCGCGTTCTAATTCTAGTACAAGGAGAAGACTTCCCAGCAACCTTCGCTACCCGCAGCGCACCAAACTTCCTCCGGATTTTGGAATCAATCACTTGTTGAGGAACACCACAGAACCATCATCTCAAACGGAATTTAAGGAAGCAGAAGCAGAAGAAGATGGCGAAGATATTGCTTGGGAGGCAGATGAGATTGAAGCTATTTCATCACTTTTCCAAGGGAGGATACCCCAAAAGCCTGGAAAGTTGGATAGACAAAGGCCTCTCCCCCTCCCACTTCCTTACAAGCTTCGACCTTTGGGACTTCCTAGGCCGAAGAAACATGTCAAGATGGCACCCATTTGTGACCAAGTCTACAAGAATCCCAATGCGCTTGTTGGTTTAGCAAGGGAAATTAGAAGCCTTGGGGTAGTTGAAGATGTGGGACTAATTCTCAACAAGTGGGTTCCCTTTCTTAGAAAAGGGTCTCTCTCCATGACAATTAGGGAATTGGGTCACATGGGTCTCCCTGACAGAGCTCTGCAGACCTTCTCTTGGGCTCAGAAACAGCCTCACCTCTTCCCGGATGACCGGCTTTTGGCTTCCGCTGTTGAGGTCCTGGCAAGATACCATGAGCTTAAACTGCCATTCAATTTGGACAAATTCACAAGTTTGGCAAGTCGTGGTGTGATTGAGGCAATGGCAAGAGGGTTCATCAAAGGGGGAAGCTTGCATCTTGCTTGGAAGCTTATATTCATAGCTAAGAATAGTGGAAGAAAGTTGAATACGAGCGTATATGCCAAGCTAATACTGGAGCTTGGGAAGAACCCGGATAAGCACAGGCTTATAGGGACCTTACTGGACGAGCTTGGGAAAAGAGAAGACCTGAATTTAACCCAGCAGGATTGTACTGCTATTATGAAAGTGTGCATTAGGCTTGGAAAATTTGAAGTTGTGGAGAGTGTTTATGACTGGTTTAGACAATCTGGGCATGATCCAAGTGTTGTTATGTACACAACTCTGATTCATAGCCGCTATTCAGAGAAGAAATACAGGGAGGCCTTGGCTGTGGTTTGGGAAATGGAGGCTTCAAACTGTCCCTTTGATTTTCCAGCTTATCGTGTGGCAATAAAGCTTTTTGTTGCTCTGAATGATCTTCCAAGGGCTGTAAGATATATTTCCAAGCTTAAGGAAGCAGGTTTCTCTCCGACATATGATGTCTACCGGGACTTGATTAAAATGTACATGGTTTCTGGGAGGCTGGCAAAGTGTAGGGATGTATGCAAGGAGGTAGACATAGCAGGATTCAAGTTAGATAAAGAAACAATGTCACAGTTGTTGCAATTAGAAAGTGAGAAAAGGTTAAGTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_3

Protein Analysis

480

Amino Acids

54.42

Weight (kDa)

9.36

Isoelectric Point (pI)

41.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01860
fragaria_vesca	FvH4_5g25440
malus_domestica	MD00G1136800.v1.1 MD16G1284100.v1.1
prunus_persica	Prupe.5G010100_v2.0.a1 Prupe.5G010100_v2.0.a1 Prupe.5G010100_v2.0.a1
pyrus_communis	pycom16g26000
rosa_chinensis	RchiOBHm_Chr5g0066911
rosa_laevigata	RLG00000002634 RLG00000035892
rosa_roxburghii	Rroxscaffold_1G00014210
rosa_rugosa	Rorug05G0379600.1
rosa_samantha	Rh5BG456300 Rh5CG478400 Rh5DG471100
rosa_wichuraiana	Rw5G041080 Rw7G024910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	10
Acc36I	ACCTGC	1 cut(s)	1253
AccB1I	GGYRCC	1 cut(s)	421
AccI	GTMKAC	3 cut(s)	441, 1287, 1359
AccII	CGCG	1 cut(s)	94
AccIII	TCCGGA	1 cut(s)	163
AciI	CCGC	3 cut(s)	143, 672, 1099
AclWI	GGATC	1 cut(s)	1055
AcsI	RAATTY	4 cut(s)	221, 728, 955, 1010
AfaI	GTAC	4 cut(s)	109, 976, 1079, 1310
AfiI	CCNNNNNNNGG	4 cut(s)	170, 621, 649, 664
AflII	CTTAAG	1 cut(s)	1253
AflIII	ACRYGT	1 cut(s)	409
AgsI	TTSAA	7 cut(s)	284, 503, 718, 850, 1016, 1158, 1375
AjnI	CCWGG	2 cut(s)	325, 684
Alw21I	GWGCWC	1 cut(s)	607
Alw26I	GTCTC	3 cut(s)	87, 558, 596
AlwI	GGATC	1 cut(s)	1055
Aor13HI	TCCGGA	1 cut(s)	163
AoxI	GGCC	3 cut(s)	347, 398, 1125
ApeKI	GCWGC	1 cut(s)	145
ApoI	RAATTY	4 cut(s)	221, 728, 955, 1010
AspA2I	CCTAGG	1 cut(s)	395
AspLEI	GCGC	4 cut(s)	11, 94, 150, 460
AspS9I	GGNCC	2 cut(s)	682, 918
AsuC2I	CCSGG	3 cut(s)	650, 896, 1292
AsuHPI	GGTGA	1 cut(s)	632
AvaII	GGWCC	2 cut(s)	682, 918
AvrII	CCTAGG	1 cut(s)	395
BanI	GGYRCC	1 cut(s)	421
BanII	GRGCYC	2 cut(s)	607, 628
BbsI	GAAGAC	2 cut(s)	124, 954
Bbv12I	GWGCWC	1 cut(s)	607
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	4 cut(s)	82, 214, 242, 412
BcgI	CGANNNNNNTGC	2 cut(s)	242, 276
BciT130I	CCWGG	2 cut(s)	327, 686
BciVI	GTATCC	1 cut(s)	306
BcnI	CCSGG	3 cut(s)	650, 896, 1292
BcoDI	GTCTC	3 cut(s)	87, 558, 596
BfaI	CTAG	2 cut(s)	105, 396
BfmI	CTRYAG	1 cut(s)	608
BfrI	CTTAAG	1 cut(s)	1253
BfuAI	ACCTGC	1 cut(s)	1253
BfuI	GTATCC	1 cut(s)	306
BisI	GCNGC	2 cut(s)	146, 1099
BlnI	CCTAGG	1 cut(s)	395
BlsI	GCNGC	2 cut(s)	147, 1100
Bme1390I	CCNGG	5 cut(s)	327, 650, 686, 896, 1292
Bme18I	GGWCC	2 cut(s)	682, 918
BmgT120I	GGNCC	2 cut(s)	682, 918
BmiI	GGNNCC	3 cut(s)	423, 534, 919
BmrFI	CCNGG	5 cut(s)	327, 650, 686, 896, 1292
BmsI	GCATC	1 cut(s)	808
BpiI	GAAGAC	2 cut(s)	124, 954
BpmI	CTGGAG	1 cut(s)	899
BpuMI	CCSGG	3 cut(s)	650, 896, 1292
BsaI	GGTCTC	2 cut(s)	558, 596
BsaJI	CCNNGG	5 cut(s)	304, 395, 490, 1128, 1226
BsaWI	WCCGGW	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	4 cut(s)	170, 621, 649, 664
Bse118I	RCCGGY	1 cut(s)	657
Bse1I	ACTGG	3 cut(s)	882, 930, 1043
Bse3DI	GCAATG	1 cut(s)	771
BseAI	TCCGGA	1 cut(s)	163
BseBI	CCWGG	2 cut(s)	327, 686
BseDI	CCNNGG	5 cut(s)	304, 395, 490, 1128, 1226
BseGI	GGATG	2 cut(s)	658, 1348
BseLI	CCNNNNNNNGG	4 cut(s)	170, 621, 649, 664
BseMI	GCAATG	1 cut(s)	771
BseMII	CTCAG	1 cut(s)	641
BseNI	ACTGG	3 cut(s)	882, 930, 1043
BseXI	GCAGC	1 cut(s)	157
BseYI	CCCAGC	2 cut(s)	125, 963
Bsh1236I	CGCG	1 cut(s)	94
BshFI	GGCC	3 cut(s)	349, 400, 1127
BshNI	GGYRCC	1 cut(s)	421
BsiHKAI	GWGCWC	1 cut(s)	607
BsiSI	CCGG	5 cut(s)	164, 650, 658, 896, 1291
BslFI	GGGAC	5 cut(s)	402, 525, 931, 1149, 1307
BslI	CCNNNNNNNGG	4 cut(s)	170, 621, 649, 664
BsmAI	GTCTC	3 cut(s)	87, 558, 596
BsmFI	GGGAC	5 cut(s)	402, 525, 931, 1149, 1307
BsmI	GAATGC	1 cut(s)	11
BsnI	GGCC	3 cut(s)	349, 400, 1127
Bso31I	GGTCTC	2 cut(s)	558, 596
Bsp1286I	GDGCHC	2 cut(s)	607, 628
Bsp13I	TCCGGA	1 cut(s)	163
Bsp1407I	TGTACA	2 cut(s)	1077, 1308
Bsp143I	GATC	2 cut(s)	1060, 1219
BspACI	CCGC	3 cut(s)	143, 672, 1099
BspANI	GGCC	3 cut(s)	349, 400, 1127
BspCNI	CTCAG	1 cut(s)	640
BspEI	TCCGGA	1 cut(s)	163
BspFNI	CGCG	1 cut(s)	94
BspLI	GGNNCC	3 cut(s)	423, 534, 919
BspMAI	CTGCAG	1 cut(s)	612
BspMI	ACCTGC	1 cut(s)	1253
BspPI	GGATC	1 cut(s)	1055
BspT107I	GGYRCC	1 cut(s)	421
BspTI	CTTAAG	1 cut(s)	1253
BspTNI	GGTCTC	2 cut(s)	558, 596
BsrDI	GCAATG	1 cut(s)	771
BsrFI	RCCGGY	1 cut(s)	657
BsrGI	TGTACA	2 cut(s)	1077, 1308
BsrI	ACTGG	3 cut(s)	882, 930, 1043
BssAI	RCCGGY	1 cut(s)	657
BssECI	CCNNGG	5 cut(s)	304, 395, 490, 1128, 1226
BssMI	GATC	2 cut(s)	1060, 1219
BssT1I	CCWWGG	5 cut(s)	304, 395, 490, 1128, 1226
Bst2UI	CCWGG	2 cut(s)	327, 686
Bst4CI	ACNGT	2 cut(s)	1163, 1401
Bst6I	CTCTTC	1 cut(s)	650
BstAFI	CTTAAG	1 cut(s)	1253
BstAUI	TGTACA	2 cut(s)	1077, 1308
BstC8I	GCNNGC	2 cut(s)	797, 1329
BstDEI	CTNAG	3 cut(s)	542, 627, 828
BstF5I	GGATG	2 cut(s)	658, 1348
BstFNI	CGCG	1 cut(s)	94
BstHHI	GCGC	4 cut(s)	11, 94, 150, 460
BstKTI	GATC	2 cut(s)	1063, 1222
BstMAI	GTCTC	3 cut(s)	87, 558, 596
BstMBI	GATC	2 cut(s)	1060, 1219
BstMWI	GCNNNNNNNGC	3 cut(s)	135, 269, 709
BstNI	CCWGG	2 cut(s)	327, 686
BstNSI	RCATGY	1 cut(s)	413
BstSCI	CCNGG	5 cut(s)	325, 648, 684, 894, 1290
BstSFI	CTRYAG	1 cut(s)	608
BstUI	CGCG	1 cut(s)	94
BstV1I	GCAGC	1 cut(s)	157
BstV2I	GAAGAC	2 cut(s)	124, 954
BstXI	CCANNNNNNTGG	1 cut(s)	326
BsuI	GTATCC	1 cut(s)	306
BsuRI	GGCC	3 cut(s)	349, 400, 1127
BtsCI	GGATG	2 cut(s)	658, 1348
BveI	ACCTGC	1 cut(s)	1253
Cac8I	GCNNGC	2 cut(s)	797, 1329
CfoI	GCGC	4 cut(s)	11, 94, 150, 460
Cfr10I	RCCGGY	1 cut(s)	657
Cfr13I	GGNCC	2 cut(s)	682, 918
Csp6I	GTAC	4 cut(s)	108, 975, 1078, 1309
CviAII	CATG	6 cut(s)	410, 562, 586, 698, 1058, 1312
CviQI	GTAC	4 cut(s)	108, 975, 1078, 1309
DdeI	CTNAG	3 cut(s)	542, 627, 828
DpnI	GATC	2 cut(s)	1062, 1221
DpnII	GATC	2 cut(s)	1060, 1219
Eam1104I	CTCTTC	1 cut(s)	650
EarI	CTCTTC	1 cut(s)	650
Ecl136II	GAGCTC	1 cut(s)	605
Eco130I	CCWWGG	5 cut(s)	304, 395, 490, 1128, 1226
Eco147I	AGGCCT	2 cut(s)	349, 1127
Eco24I	GRGCYC	2 cut(s)	607, 628
Eco31I	GGTCTC	2 cut(s)	558, 596
Eco47I	GGWCC	2 cut(s)	682, 918
Eco53kI	GAGCTC	1 cut(s)	605
EcoICRI	GAGCTC	1 cut(s)	605
EcoO109I	RGGNCCY	2 cut(s)	682, 918
EcoRII	CCWGG	2 cut(s)	325, 684
EcoT14I	CCWWGG	5 cut(s)	304, 395, 490, 1128, 1226
EcoT38I	GRGCYC	2 cut(s)	607, 628
ErhI	CCWWGG	5 cut(s)	304, 395, 490, 1128, 1226
FaeI	CATG	6 cut(s)	413, 565, 589, 701, 1061, 1315
FaqI	GGGAC	5 cut(s)	402, 525, 931, 1149, 1307
FatI	CATG	6 cut(s)	409, 561, 585, 697, 1057, 1311
FauI	CCCGC	1 cut(s)	150
FauNDI	CATATG	1 cut(s)	1279
FblI	GTMKAC	3 cut(s)	441, 1287, 1359
Fnu4HI	GCNGC	2 cut(s)	146, 1099
FokI	GGATG	2 cut(s)	665, 1355
FriOI	GRGCYC	2 cut(s)	607, 628
Fsp4HI	GCNGC	2 cut(s)	146, 1099
FspBI	CTAG	2 cut(s)	105, 396
FspI	TGCGCA	1 cut(s)	10
GlaI	GCGC	4 cut(s)	10, 93, 149, 459
GluI	GCNGC	2 cut(s)	146, 1099
GsaI	CCCAGC	2 cut(s)	129, 967
GsuI	CTGGAG	1 cut(s)	899
HaeIII	GGCC	3 cut(s)	349, 400, 1127
HapII	CCGG	5 cut(s)	164, 650, 658, 896, 1291
HhaI	GCGC	4 cut(s)	11, 94, 150, 460
Hin1II	CATG	6 cut(s)	413, 565, 589, 701, 1061, 1315
Hin6I	GCGC	4 cut(s)	9, 92, 148, 458
HinP1I	GCGC	4 cut(s)	9, 92, 148, 458
HindIII	AAGCTT	5 cut(s)	374, 793, 812, 1199, 1250
HinfI	GANTC	4 cut(s)	174, 448, 1090, 1371
HpaII	CCGG	5 cut(s)	164, 650, 658, 896, 1291
HphI	GGTGA	1 cut(s)	632
Hpy166II	GTNNAC	4 cut(s)	442, 1080, 1288, 1360
Hpy188I	TCNGA	6 cut(s)	87, 630, 1089, 1108, 1215, 1275
Hpy188III	TCNNGA	2 cut(s)	164, 415
Hpy8I	GTNNAC	4 cut(s)	442, 1080, 1288, 1360
HpyAV	CCTTC	2 cut(s)	143, 625
HpyCH4III	ACNGT	2 cut(s)	1163, 1401
HpyCH4V	TGCA	6 cut(s)	53, 610, 799, 996, 1350, 1408
HpyF10VI	GCNNNNNNNGC	3 cut(s)	135, 269, 709
HpyF3I	CTNAG	3 cut(s)	542, 627, 828
Hsp92II	CATG	6 cut(s)	413, 565, 589, 701, 1061, 1315
HspAI	GCGC	4 cut(s)	9, 92, 148, 458
Kpn2I	TCCGGA	1 cut(s)	163
Kzo9I	GATC	2 cut(s)	1060, 1219
LmnI	GCTCC	1 cut(s)	880
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	1 cut(s)	808
MaeI	CTAG	2 cut(s)	105, 396
MaeIII	GTNAC	3 cut(s)	431, 581, 1395
MalI	GATC	2 cut(s)	1062, 1221
MboI	GATC	2 cut(s)	1060, 1219
MhlI	GDGCHC	2 cut(s)	607, 628
MmeI	TCCRAC	2 cut(s)	315, 1298
MroI	TCCGGA	1 cut(s)	163
MseI	TTAA	7 cut(s)	225, 705, 959, 1254, 1302, 1430, 1438
MspA1I	CMGCKG	1 cut(s)	674
MspCI	CTTAAG	1 cut(s)	1253
MspI	CCGG	5 cut(s)	164, 650, 658, 896, 1291
MspR9I	CCNGG	5 cut(s)	327, 650, 686, 896, 1292
Mva1269I	GAATGC	1 cut(s)	11
MvaI	CCWGG	2 cut(s)	327, 686
MvnI	CGCG	1 cut(s)	94
MwoI	GCNNNNNNNGC	3 cut(s)	135, 269, 709
NciI	CCSGG	3 cut(s)	650, 896, 1292
NdeI	CATATG	1 cut(s)	1279
NdeII	GATC	2 cut(s)	1060, 1219
NlaIII	CATG	6 cut(s)	413, 565, 589, 701, 1061, 1315
NlaIV	GGNNCC	3 cut(s)	423, 534, 919
NmuCI	GTSAC	3 cut(s)	431, 581, 1395
NsbI	TGCGCA	1 cut(s)	10
NspI	RCATGY	1 cut(s)	413
PceI	AGGCCT	2 cut(s)	349, 1127
PciI	ACATGT	1 cut(s)	409
PctI	GAATGC	1 cut(s)	11
PfeI	GAWTC	4 cut(s)	174, 448, 1090, 1371
PflFI	GACNNNGTC	1 cut(s)	437
PfoI	TCCNGGA	1 cut(s)	648
PkrI	GCNGC	2 cut(s)	147, 1100
PpuMI	RGGWCCY	2 cut(s)	682, 918
PscI	ACATGT	1 cut(s)	409
Psp124BI	GAGCTC	1 cut(s)	607
Psp5II	RGGWCCY	2 cut(s)	682, 918
Psp6I	CCWGG	2 cut(s)	325, 684
PspFI	CCCAGC	2 cut(s)	125, 963
PspGI	CCWGG	2 cut(s)	325, 684
PspN4I	GGNNCC	3 cut(s)	423, 534, 919
PspPI	GGNCC	2 cut(s)	682, 918
PspPPI	RGGWCCY	2 cut(s)	682, 918
PstI	CTGCAG	1 cut(s)	612
PsyI	GACNNNGTC	1 cut(s)	437
RsaI	GTAC	4 cut(s)	109, 976, 1079, 1310
RsaNI	GTAC	4 cut(s)	108, 975, 1078, 1309
SacI	GAGCTC	1 cut(s)	607
SaqAI	TTAA	7 cut(s)	225, 705, 959, 1254, 1302, 1430, 1438
SatI	GCNGC	2 cut(s)	146, 1099
Sau3AI	GATC	2 cut(s)	1060, 1219
Sau96I	GGNCC	2 cut(s)	682, 918
ScrFI	CCNGG	5 cut(s)	327, 650, 686, 896, 1292
SduI	GDGCHC	2 cut(s)	607, 628
SfaNI	GCATC	1 cut(s)	808
SfcI	CTRYAG	1 cut(s)	608
SinI	GGWCC	2 cut(s)	682, 918
SmlI	CTYRAG	1 cut(s)	1253
SmoI	CTYRAG	1 cut(s)	1253
SseBI	AGGCCT	2 cut(s)	349, 1127
SsiI	CCGC	3 cut(s)	143, 672, 1099
SspMI	CTAG	2 cut(s)	105, 396
SstI	GAGCTC	1 cut(s)	607
StuI	AGGCCT	2 cut(s)	349, 1127
StyD4I	CCNGG	5 cut(s)	325, 648, 684, 894, 1290
StyI	CCWWGG	5 cut(s)	304, 395, 490, 1128, 1226
TaaI	ACNGT	2 cut(s)	1163, 1401
TaqI	TCGA	1 cut(s)	379
TatI	WGTACW	4 cut(s)	107, 974, 1077, 1308
TauI	GCSGC	1 cut(s)	1101
TfiI	GAWTC	4 cut(s)	174, 448, 1090, 1371
Tru1I	TTAA	7 cut(s)	225, 705, 959, 1254, 1302, 1430, 1438
Tru9I	TTAA	7 cut(s)	225, 705, 959, 1254, 1302, 1430, 1438
TseFI	GTSAC	3 cut(s)	431, 581, 1395
TseI	GCWGC	1 cut(s)	145
Tsp45I	GTSAC	3 cut(s)	431, 581, 1395
TspDTI	ATGAA	5 cut(s)	282, 769, 811, 1001, 1082
TspGWI	ACGGA	1 cut(s)	233
Tth111I	GACNNNGTC	1 cut(s)	437
Vha464I	CTTAAG	1 cut(s)	1253
VpaK11BI	GGWCC	2 cut(s)	682, 918
XapI	RAATTY	4 cut(s)	221, 728, 955, 1010
XceI	RCATGY	1 cut(s)	413
XcmI	CCANNNNNNNNNTGG	1 cut(s)	874
XmaJI	CCTAGG	1 cut(s)	395
XmiI	GTMKAC	3 cut(s)	441, 1287, 1359
XspI	CTAG	2 cut(s)	105, 396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.