Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0013270

Physical Location & Seq

Genomic Coordinates Forward (+)

40344163 .. 40345450

Gene Structure 1288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1284100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGGTCATAGTTTTCATTCAATGGATTCTCTATTGTCCGCTACAATTCCCTTTTTGTTCCCTCAAAGTTTTGCAAGAAATGGCCGCCGGCTGGTTACAGTGGCGCAGCGTTCTAACACTAGGACACGACTTCCCAAGAACCTTCGCTACCCGCGGCGCACCAAGCTTCCTCCGGACCTCCTTGGAATCGACCCCTTCTTGAACAACACAAGCACTTCCACAGAACCTTCATCTCGAACAGAAGAATTCGAGGCAGCAGCAGCAGATGAAGAAGGTAAAGAAGATGGCGTCATTGCGTGGGAATCAGATGAGATCGAAGCTATTTCATCCCTTTTCCAAGGGAGAATACCCCAGAAGCCCGGAATGCTGAATCGACAGAGGCCTTTCCCGCTCCCACTTCCTCACAAGCTTCGACCTTTGGGACTTCCCACGCCCAAGAAACATGTTAAGGTGCCGCCCGTATGCGACCAAGTCTACAAAAACCCTAATAATGCGCTTGTTGGGTTAGCAAGGGAAATCAGAAGCCTTGGAGCAGACGAAGACGCGGGACGAGTTCTGAACAATTGGATTCAGTGTCTTAGAAAAGGCTCTCTTTCCATGACAATTAGGGAATTGGGTCACATGGGTCTCCCTGAGAGAGCTCTGCAGACCTTCTCTTGGGCTCAGAAACAGCCTCAACTCTTCCCCGATGACCGCCTTTTGGCTTCAACGGTTGAGGGTTCATTAAAGGAGGAAGCTTGCATCTGGAAGCTTGTATTGGTAGCTAAGAATAGTGGAAGAAAGTTGGATCCGGGCTTATATGCTAAGCTGATACTCAAGCTTGGGAAGAACCCCGATAAGCACAGGCTTGTAATGACCTTACTCGACGAGCTTGGAGAAAGGGAAGACATGAATTTAAGTCAGCAGGATTGTACTGCTATTATGAAAGTGTGCATTAGGCTTGGGAAATTTGAAGTTGTGGAGAGTGTTTATGACTGGTTTAGACAATCTGGGCATGATCCAAGTGTCGTTATGTACACAACTCTGATTCATAGTCGCTATTCGCAGAAGAAATACAGGGAGGCTCTAGCTTTGGTTTGGGAAATGGAGGCTTCAAATTGTCTCTTTGATTTTCCAGCTTATCGTGTGGCAGTAAAGCTTTTTGTTGCCCTGAATGATCATCCCAAGGGCAGTAAGATATTTCTCAAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_3

Protein Analysis

398

Amino Acids

44.91

Weight (kDa)

9.31

Isoelectric Point (pI)

43.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01860
fragaria_vesca	FvH4_5g25440
malus_domestica	MD00G1136800.v1.1 MD16G1284100.v1.1
prunus_persica	Prupe.5G010100_v2.0.a1 Prupe.5G010100_v2.0.a1 Prupe.5G010100_v2.0.a1
pyrus_communis	pycom16g26000
rosa_chinensis	RchiOBHm_Chr5g0066911
rosa_laevigata	RLG00000002634 RLG00000035892
rosa_roxburghii	Rroxscaffold_1G00014210
rosa_rugosa	Rorug05G0379600.1
rosa_samantha	Rh5BG456300 Rh5CG478400 Rh5DG471100
rosa_wichuraiana	Rw5G041080 Rw7G024910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	451
AccBSI	CCGCTC	1 cut(s)	391
AccI	GTMKAC	1 cut(s)	474
AccII	CGCG	2 cut(s)	154, 545
AccIII	TCCGGA	1 cut(s)	172
AciI	CCGC	8 cut(s)	39, 85, 152, 154, 389, 455, 545, 694
AclWI	GGATC	3 cut(s)	782, 795, 992
AcoI	YGGCCR	1 cut(s)	82
AcsI	RAATTY	3 cut(s)	245, 892, 947
AcyI	GRCGYC	1 cut(s)	288
AfaI	GTAC	2 cut(s)	913, 1016
AfiI	CCNNNNNNNGG	3 cut(s)	91, 657, 700
AflIII	ACRYGT	1 cut(s)	442
AgsI	TTSAA	5 cut(s)	21, 202, 708, 953, 1095
AjuI	GAANNNNNNNTTGG	2 cut(s)	740, 772
Alw21I	GWGCWC	1 cut(s)	643
Alw26I	GTCTC	2 cut(s)	632, 1106
AlwI	GGATC	3 cut(s)	782, 795, 992
Aor13HI	TCCGGA	1 cut(s)	172
AoxI	GGCC	2 cut(s)	82, 380
ApeKI	GCWGC	4 cut(s)	106, 254, 257, 260
ApoI	RAATTY	3 cut(s)	245, 892, 947
AspLEI	GCGC	3 cut(s)	106, 159, 496
AspS9I	GGNCC	1 cut(s)	175
AsuC2I	CCSGG	2 cut(s)	360, 792
AvaII	GGWCC	1 cut(s)	175
BamHI	GGATCC	1 cut(s)	787
BanI	GGYRCC	1 cut(s)	451
BanII	GRGCYC	2 cut(s)	643, 664
BbsI	GAAGAC	2 cut(s)	546, 891
Bbv12I	GWGCWC	1 cut(s)	643
BbvI	GCAGC	4 cut(s)	118, 266, 269, 272
BccI	CCATC	1 cut(s)	278
BclI	TGATCA	1 cut(s)	1156
BcnI	CCSGG	2 cut(s)	360, 792
BcoDI	GTCTC	2 cut(s)	632, 1106
BfaI	CTAG	2 cut(s)	120, 1067
BfmI	CTRYAG	1 cut(s)	644
BisI	GCNGC	7 cut(s)	85, 107, 155, 255, 258, 261, 455
BlpI	GCTNAGC	1 cut(s)	804
BlsI	GCNGC	7 cut(s)	86, 108, 156, 256, 259, 262, 456
Bme1390I	CCNGG	2 cut(s)	360, 792
Bme18I	GGWCC	1 cut(s)	175
BmgT120I	GGNCC	1 cut(s)	175
BmiI	GGNNCC	2 cut(s)	453, 789
BmrFI	CCNGG	2 cut(s)	360, 792
BmsI	GCATC	1 cut(s)	750
BpiI	GAAGAC	2 cut(s)	546, 891
Bpu1102I	GCTNAGC	1 cut(s)	804
BpuEI	CTTGAG	1 cut(s)	800
BpuMI	CCSGG	2 cut(s)	360, 792
BsaHI	GRCGYC	1 cut(s)	288
BsaI	GGTCTC	1 cut(s)	632
BsaJI	CCNNGG	5 cut(s)	152, 181, 337, 526, 1164
BsaWI	WCCGGW	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	3 cut(s)	91, 657, 700
Bse118I	RCCGGY	1 cut(s)	87
Bse1I	ACTGG	1 cut(s)	980
Bse3DI	GCAATG	1 cut(s)	291
BseAI	TCCGGA	1 cut(s)	172
BseDI	CCNNGG	5 cut(s)	152, 181, 337, 526, 1164
BseGI	GGATG	2 cut(s)	326, 1159
BseLI	CCNNNNNNNGG	3 cut(s)	91, 657, 700
BseMI	GCAATG	1 cut(s)	291
BseMII	CTCAG	2 cut(s)	624, 677
BseNI	ACTGG	1 cut(s)	980
BseXI	GCAGC	4 cut(s)	118, 266, 269, 272
Bsh1236I	CGCG	2 cut(s)	154, 545
BshFI	GGCC	2 cut(s)	84, 382
BshNI	GGYRCC	1 cut(s)	451
BsiHKAI	GWGCWC	1 cut(s)	643
BsiSI	CCGG	4 cut(s)	88, 173, 360, 791
BslFI	GGGAC	2 cut(s)	435, 561
BslI	CCNNNNNNNGG	3 cut(s)	91, 657, 700
BsmAI	GTCTC	2 cut(s)	632, 1106
BsmFI	GGGAC	2 cut(s)	435, 561
BsmI	GAATGC	1 cut(s)	369
BsnI	GGCC	2 cut(s)	84, 382
Bso31I	GGTCTC	1 cut(s)	632
Bsp1286I	GDGCHC	2 cut(s)	643, 664
Bsp13I	TCCGGA	1 cut(s)	172
Bsp1407I	TGTACA	1 cut(s)	1014
Bsp143I	GATC	4 cut(s)	312, 787, 997, 1156
Bsp1720I	GCTNAGC	1 cut(s)	804
BspACI	CCGC	8 cut(s)	39, 85, 152, 154, 389, 455, 545, 694
BspANI	GGCC	2 cut(s)	84, 382
BspCNI	CTCAG	2 cut(s)	625, 676
BspEI	TCCGGA	1 cut(s)	172
BspFNI	CGCG	2 cut(s)	154, 545
BspLI	GGNNCC	2 cut(s)	453, 789
BspMAI	CTGCAG	1 cut(s)	648
BspPI	GGATC	3 cut(s)	782, 795, 992
BspT107I	GGYRCC	1 cut(s)	451
BspTNI	GGTCTC	1 cut(s)	632
BsrBI	CCGCTC	1 cut(s)	391
BsrDI	GCAATG	1 cut(s)	291
BsrFI	RCCGGY	1 cut(s)	87
BsrGI	TGTACA	1 cut(s)	1014
BsrI	ACTGG	1 cut(s)	980
BssAI	RCCGGY	1 cut(s)	87
BssECI	CCNNGG	5 cut(s)	152, 181, 337, 526, 1164
BssMI	GATC	4 cut(s)	312, 787, 997, 1156
BssNI	GRCGYC	1 cut(s)	288
BssT1I	CCWWGG	4 cut(s)	181, 337, 526, 1164
Bst4CI	ACNGT	2 cut(s)	100, 712
Bst6I	CTCTTC	1 cut(s)	686
BstACI	GRCGYC	1 cut(s)	288
BstAUI	TGTACA	1 cut(s)	1014
BstC8I	GCNNGC	2 cut(s)	89, 739
BstDEI	CTNAG	5 cut(s)	578, 633, 663, 765, 804
BstDSI	CCRYGG	1 cut(s)	152
BstF5I	GGATG	2 cut(s)	326, 1159
BstFNI	CGCG	2 cut(s)	154, 545
BstHHI	GCGC	3 cut(s)	106, 159, 496
BstKTI	GATC	4 cut(s)	315, 790, 1000, 1159
BstMAI	GTCTC	2 cut(s)	632, 1106
BstMBI	GATC	4 cut(s)	312, 787, 997, 1156
BstMWI	GCNNNNNNNGC	4 cut(s)	163, 260, 364, 388
BstNSI	RCATGY	1 cut(s)	446
BstSCI	CCNGG	2 cut(s)	358, 790
BstSFI	CTRYAG	1 cut(s)	644
BstUI	CGCG	2 cut(s)	154, 545
BstV1I	GCAGC	4 cut(s)	118, 266, 269, 272
BstV2I	GAAGAC	2 cut(s)	546, 891
BstX2I	RGATCY	1 cut(s)	787
BstYI	RGATCY	1 cut(s)	787
BsuRI	GGCC	2 cut(s)	84, 382
BtgI	CCRYGG	1 cut(s)	152
BtsCI	GGATG	2 cut(s)	326, 1159
BtsIMutI	CAGTG	2 cut(s)	105, 578
Cac8I	GCNNGC	2 cut(s)	89, 739
CfoI	GCGC	3 cut(s)	106, 159, 496
Cfr10I	RCCGGY	1 cut(s)	87
Cfr13I	GGNCC	1 cut(s)	175
Cfr42I	CCGCGG	1 cut(s)	155
CseI	GACGC	2 cut(s)	277, 551
Csp6I	GTAC	2 cut(s)	912, 1015
CviAII	CATG	5 cut(s)	443, 598, 622, 889, 995
CviQI	GTAC	2 cut(s)	912, 1015
DdeI	CTNAG	5 cut(s)	578, 633, 663, 765, 804
DpnI	GATC	4 cut(s)	314, 789, 999, 1158
DpnII	GATC	4 cut(s)	312, 787, 997, 1156
EaeI	YGGCCR	1 cut(s)	82
Eam1104I	CTCTTC	1 cut(s)	686
EarI	CTCTTC	1 cut(s)	686
Ecl136II	GAGCTC	1 cut(s)	641
Eco130I	CCWWGG	4 cut(s)	181, 337, 526, 1164
Eco147I	AGGCCT	1 cut(s)	382
Eco24I	GRGCYC	2 cut(s)	643, 664
Eco31I	GGTCTC	1 cut(s)	632
Eco47I	GGWCC	1 cut(s)	175
Eco53kI	GAGCTC	1 cut(s)	641
EcoICRI	GAGCTC	1 cut(s)	641
EcoRI	GAATTC	1 cut(s)	245
EcoT14I	CCWWGG	4 cut(s)	181, 337, 526, 1164
EcoT38I	GRGCYC	2 cut(s)	643, 664
ErhI	CCWWGG	4 cut(s)	181, 337, 526, 1164
FaeI	CATG	5 cut(s)	446, 601, 625, 892, 998
FalI	AAGNNNNNCTT	2 cut(s)	576, 608
FaqI	GGGAC	2 cut(s)	435, 561
FatI	CATG	5 cut(s)	442, 597, 621, 888, 994
FauI	CCCGC	3 cut(s)	159, 396, 538
FbaI	TGATCA	1 cut(s)	1156
FblI	GTMKAC	1 cut(s)	474
Fnu4HI	GCNGC	7 cut(s)	85, 107, 155, 255, 258, 261, 455
FokI	GGATG	2 cut(s)	313, 1146
FriOI	GRGCYC	2 cut(s)	643, 664
Fsp4HI	GCNGC	7 cut(s)	85, 107, 155, 255, 258, 261, 455
FspBI	CTAG	2 cut(s)	120, 1067
GlaI	GCGC	3 cut(s)	105, 158, 495
GluI	GCNGC	7 cut(s)	85, 107, 155, 255, 258, 261, 455
HaeIII	GGCC	2 cut(s)	84, 382
HapII	CCGG	4 cut(s)	88, 173, 360, 791
HgaI	GACGC	2 cut(s)	277, 551
HhaI	GCGC	3 cut(s)	106, 159, 496
Hin1I	GRCGYC	1 cut(s)	288
Hin1II	CATG	5 cut(s)	446, 601, 625, 892, 998
Hin6I	GCGC	3 cut(s)	104, 157, 494
HinP1I	GCGC	3 cut(s)	104, 157, 494
HindIII	AAGCTT	7 cut(s)	164, 407, 735, 749, 818, 1136, 1188
HinfI	GANTC	6 cut(s)	26, 186, 302, 370, 568, 1027
HpaII	CCGG	4 cut(s)	88, 173, 360, 791
Hpy166II	GTNNAC	2 cut(s)	475, 1017
Hpy188I	TCNGA	5 cut(s)	307, 521, 558, 666, 1026
Hpy188III	TCNNGA	4 cut(s)	173, 199, 234, 745
Hpy8I	GTNNAC	2 cut(s)	475, 1017
Hpy99I	CGWCG	1 cut(s)	869
HpyAV	CCTTC	5 cut(s)	152, 205, 237, 266, 661
HpyCH4III	ACNGT	2 cut(s)	100, 712
HpyCH4V	TGCA	4 cut(s)	74, 646, 741, 933
HpyF10VI	GCNNNNNNNGC	4 cut(s)	163, 260, 364, 388
HpyF3I	CTNAG	5 cut(s)	578, 633, 663, 765, 804
Hsp92I	GRCGYC	1 cut(s)	288
Hsp92II	CATG	5 cut(s)	446, 601, 625, 892, 998
HspAI	GCGC	3 cut(s)	104, 157, 494
Kpn2I	TCCGGA	1 cut(s)	172
KroI	GCCGGC	1 cut(s)	87
KroNI	GCCGGC	1 cut(s)	89
Ksp22I	TGATCA	1 cut(s)	1156
KspI	CCGCGG	1 cut(s)	155
Kzo9I	GATC	4 cut(s)	312, 787, 997, 1156
LmnI	GCTCC	2 cut(s)	396, 530
Lsp1109I	GCAGC	4 cut(s)	118, 266, 269, 272
LweI	GCATC	1 cut(s)	750
MaeI	CTAG	2 cut(s)	120, 1067
MaeIII	GTNAC	2 cut(s)	94, 617
MalI	GATC	4 cut(s)	314, 789, 999, 1158
MbiI	CCGCTC	1 cut(s)	391
MboI	GATC	4 cut(s)	312, 787, 997, 1156
MboII	GAAGA	9 cut(s)	254, 281, 293, 551, 673, 789, 838, 896, 1060
MfeI	CAATTG	1 cut(s)	562
MflI	RGATCY	1 cut(s)	787
MhlI	GDGCHC	2 cut(s)	643, 664
MluCI	AATT	8 cut(s)	45, 245, 562, 603, 611, 892, 947, 1096
MmeI	TCCRAC	1 cut(s)	765
MroI	TCCGGA	1 cut(s)	172
MroNI	GCCGGC	1 cut(s)	87
MseI	TTAA	4 cut(s)	447, 725, 896, 1192
MspA1I	CMGCKG	1 cut(s)	154
MspI	CCGG	4 cut(s)	88, 173, 360, 791
MspR9I	CCNGG	2 cut(s)	360, 792
MunI	CAATTG	1 cut(s)	562
Mva1269I	GAATGC	1 cut(s)	369
MvnI	CGCG	2 cut(s)	154, 545
MwoI	GCNNNNNNNGC	4 cut(s)	163, 260, 364, 388
NaeI	GCCGGC	1 cut(s)	89
NciI	CCSGG	2 cut(s)	360, 792
NdeII	GATC	4 cut(s)	312, 787, 997, 1156
NgoMIV	GCCGGC	1 cut(s)	87
NlaIII	CATG	5 cut(s)	446, 601, 625, 892, 998
NlaIV	GGNNCC	2 cut(s)	453, 789
NmuCI	GTSAC	1 cut(s)	617
NspI	RCATGY	1 cut(s)	446
PceI	AGGCCT	1 cut(s)	382
PciI	ACATGT	1 cut(s)	442
PctI	GAATGC	1 cut(s)	369
PdiI	GCCGGC	1 cut(s)	89
PfeI	GAWTC	6 cut(s)	26, 186, 302, 370, 568, 1027
PflFI	GACNNNGTC	1 cut(s)	470
PkrI	GCNGC	7 cut(s)	86, 108, 156, 256, 259, 262, 456
PscI	ACATGT	1 cut(s)	442
Psp124BI	GAGCTC	1 cut(s)	643
PspN4I	GGNNCC	2 cut(s)	453, 789
PspPI	GGNCC	1 cut(s)	175
PsrI	GAACNNNNNNTAC	2 cut(s)	131, 163
PstI	CTGCAG	1 cut(s)	648
PsuI	RGATCY	1 cut(s)	787
PsyI	GACNNNGTC	1 cut(s)	470
RsaI	GTAC	2 cut(s)	913, 1016
RsaNI	GTAC	2 cut(s)	912, 1015
SacI	GAGCTC	1 cut(s)	643
SacII	CCGCGG	1 cut(s)	155
SaqAI	TTAA	4 cut(s)	447, 725, 896, 1192
SatI	GCNGC	7 cut(s)	85, 107, 155, 255, 258, 261, 455
Sau3AI	GATC	4 cut(s)	312, 787, 997, 1156
Sau96I	GGNCC	1 cut(s)	175
ScrFI	CCNGG	2 cut(s)	360, 792
SduI	GDGCHC	2 cut(s)	643, 664
SfaNI	GCATC	1 cut(s)	750
SfcI	CTRYAG	1 cut(s)	644
Sfr303I	CCGCGG	1 cut(s)	155
SgrBI	CCGCGG	1 cut(s)	155
SinI	GGWCC	1 cut(s)	175
SmlI	CTYRAG	1 cut(s)	815
SmoI	CTYRAG	1 cut(s)	815
Sse9I	AATT	8 cut(s)	45, 245, 562, 603, 611, 892, 947, 1096
SseBI	AGGCCT	1 cut(s)	382
SsiI	CCGC	8 cut(s)	39, 85, 152, 154, 389, 455, 545, 694
SspMI	CTAG	2 cut(s)	120, 1067
SstI	GAGCTC	1 cut(s)	643
StuI	AGGCCT	1 cut(s)	382
StyD4I	CCNGG	2 cut(s)	358, 790
StyI	CCWWGG	4 cut(s)	181, 337, 526, 1164
TaaI	ACNGT	2 cut(s)	100, 712
TaqI	TCGA	7 cut(s)	189, 235, 249, 315, 373, 412, 864
TasI	AATT	8 cut(s)	45, 245, 562, 603, 611, 892, 947, 1096
TatI	WGTACW	2 cut(s)	911, 1014
TauI	GCSGC	3 cut(s)	87, 157, 457
TfiI	GAWTC	6 cut(s)	26, 186, 302, 370, 568, 1027
Tru1I	TTAA	4 cut(s)	447, 725, 896, 1192
Tru9I	TTAA	4 cut(s)	447, 725, 896, 1192
TscAI	CASTG	2 cut(s)	105, 578
TseFI	GTSAC	1 cut(s)	617
TseI	GCWGC	4 cut(s)	106, 254, 257, 260
Tsp45I	GTSAC	1 cut(s)	617
TspDTI	ATGAA	8 cut(s)	5, 219, 282, 315, 711, 905, 938, 1019
TspRI	CASTG	2 cut(s)	105, 578
Tth111I	GACNNNGTC	1 cut(s)	470
VpaK11BI	GGWCC	1 cut(s)	175
XapI	RAATTY	3 cut(s)	245, 892, 947
XceI	RCATGY	1 cut(s)	446
XmiI	GTMKAC	1 cut(s)	474
XspI	CTAG	2 cut(s)	120, 1067

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.