RLG00000035892

Pentatricopeptide repeat domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0013270
Physical Location & Seq
Reverse (-)
73147188 .. 73148794
1607 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035892

Sequence Viewer

Length: 1503 bp
ATGGATTGCATGTTCTTTGGTATGATTCCCATTTTGTGCCCACAGAATTTTGCAAGGAATGATAGGGTGACTTTCATGGTGCGTCCTAGTAGTACAAGGAGAAGAAGCCTGCCCAAGAACCTTCGCTATCCGCGGCAAGCAAAGCTTCCTCCTGATCTCGGAGTCAACCAATTCTTGAACAAGACAAGCAATGATGCCAGTGAGCCAGAGTTCCCTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGTGTACTGAAGATGGCGACATTGTTTGGGAATCAGATGAAATTGAAGCTATTCAGTCACTTTTCCAAGGGAGAATACCCCAAAAGCCGGGGAGTTTGAATAGGCAGAGGCCTCTACCACTCCCACTTCCTTATAAGGTTCGACCTTCGAGACTTCCATCACCCAAGAAAAATGCTGTTAAGATTGGACCAATGTCTAAGCAAGTGTACAAGAACCCCAATGCCCTTGTTGGTTTGGCAAGGGAAATTGGAAGCCTTGCAGCGGATAAAGATGTGGGCATAGTTCTCAACAAGAGGGTTCACTTTCTGCGAAAAGGGTCTCTCTCCATGACAATTCGGGAATTGGGTCACATGGGGCTTCCTGAGAGGGCTCTGCAGACCTTCTGTTGGGCTCAGAAACAGCCTCAGCTGTACCCTGATGACCGGATTTTGAGTTCGACAGTTGAGGTCCTGGCAAGGAACCATGAGCTGAAACTGCCATTTAATTTGGACAAGTTCACTAGTTCCGCGAGTCGTAGTGTGATTGAGGCAATGGTGAGAGGTTTCATTAAAGGAGGAAGCTTGCATCTAGCTTGGAAGCTAGTATCGGTAGCCAAGGATAATCAAAGGAAGCTGGATCCCAGCTTGTACGCCAAGCTAATAGTAGAGTTTGGGAAAAATCCTGATAAACATATGGTTGTAATGACCATACTGGAGGAGCTTGGAGAAAGAGAAGACTTGAGTTTAAGCCAACAGGACTGTACTGCTATTATGAAAGTATGCATTAGGCTTGGAAAATTTGAAGTGGTCGAGAGTGTTTATGATTGGTTTAGACAATCTGGACACGATCCAACTGTCGTTATTTACACAACTTTGATGCACAGCCGCTACTCTGAGAAGAGATACAGGGACGCCTTGGCTGTGGTTTGGGAAATGGAGGCTTCAAATTGTCTCTTTGACTTTCCAGCTTATCGAGTTGTAATAAAACTTTTTGTTGCTCTGAATGATCTTGCAAGGGCTGCAAGATATTTTTCGAAACTTAAAGAAGCAGGTTTTACCCCAACATATGACGTATACCGGGATTTGATCAGAATTTACATGGTTTCTGGGCGGCTAGCCAAGTGTAGAGAGATTTGCAAGGAGGTAGAGATGGGAGGACTGAAGTTGGATCAAGAAACAATGTCTCATTTGTTGCAATTAGAAAGAGAGAAAAGCTTACTGACTTCATCATGGTGTGCTACTGATTTAGATATTGTATGTGTAACCAAAATTCACTGA

Protein Analysis

501

Amino Acids

57.24

Weight (kDa)

8.6

Isoelectric Point (pI)

50.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013270)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01860
fragaria_vesca FvH4_5g25440
malus_domestica MD00G1136800.v1.1 MD16G1284100.v1.1
prunus_persica Prupe.5G010100_v2.0.a1 Prupe.5G010100_v2.0.a1 Prupe.5G010100_v2.0.a1
pyrus_communis pycom16g26000
rosa_chinensis RchiOBHm_Chr5g0066911
rosa_laevigata RLG00000002634 RLG00000035892
rosa_roxburghii Rroxscaffold_1G00014210
rosa_rugosa Rorug05G0379600.1
rosa_samantha Rh5BG456300 Rh5CG478400 Rh5DG471100
rosa_wichuraiana Rw5G041080 Rw7G024910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 381
Acc36I ACCTGC 1 cut(s) 1265
AccI GTMKAC 1 cut(s) 1299
AccII CGCG 2 cut(s) 133, 755
AciI CCGC 6 cut(s) 131, 133, 509, 753, 1111, 1336
AclWI GGATC 4 cut(s) 857, 870, 1067, 1401
AcsI RAATTY 4 cut(s) 46, 1022, 1317, 1494
AcuI CTGAAG 3 cut(s) 237, 276, 1406
AcyI GRCGYC 1 cut(s) 1137
AfaI GTAC 6 cut(s) 94, 253, 455, 659, 875, 988
AfiI CCNNNNNNNGG 4 cut(s) 158, 334, 508, 633
AgsI TTSAA 5 cut(s) 178, 293, 346, 1028, 1170
AhlI ACTAGT 1 cut(s) 746
AjnI CCWGG 1 cut(s) 696
AloI GAACNNNNNNTCC 3 cut(s) 28, 664, 696
Alw26I GTCTC 4 cut(s) 391, 570, 1181, 1413
AlwI GGATC 4 cut(s) 857, 870, 1067, 1401
AoxI GGCC 1 cut(s) 356
ApeKI GCWGC 2 cut(s) 506, 1244
ApoI RAATTY 4 cut(s) 46, 1022, 1317, 1494
Asp700I GAANNNNTTC 1 cut(s) 297
AspS9I GGNCC 2 cut(s) 434, 694
AsuC2I CCSGG 2 cut(s) 336, 1304
AsuHPI GGTGA 3 cut(s) 79, 399, 793
AsuII TTCGAA 1 cut(s) 1259
AsuNHI GCTAGC 1 cut(s) 1339
AvaII GGWCC 2 cut(s) 434, 694
BaeGI GKGCMC 1 cut(s) 41
BamHI GGATCC 1 cut(s) 862
BanII GRGCYC 2 cut(s) 619, 640
BbsI GAAGAC 1 cut(s) 966
BbvCI CCTCAGC 1 cut(s) 651
BbvI GCAGC 2 cut(s) 518, 1231
BccI CCATC 3 cut(s) 254, 412, 1369
BciT130I CCWGG 1 cut(s) 698
BclI TGATCA 1 cut(s) 1311
BcnI CCSGG 2 cut(s) 336, 1304
BcoDI GTCTC 4 cut(s) 391, 570, 1181, 1413
BcuI ACTAGT 1 cut(s) 746
BfaI CTAG 5 cut(s) 87, 747, 815, 827, 1340
BfmI CTRYAG 1 cut(s) 620
BfuAI ACCTGC 1 cut(s) 1265
BisI GCNGC 5 cut(s) 134, 507, 1111, 1245, 1337
BlsI GCNGC 5 cut(s) 135, 508, 1112, 1246, 1338
Bme1390I CCNGG 3 cut(s) 336, 698, 1304
Bme18I GGWCC 2 cut(s) 434, 694
BmgT120I GGNCC 2 cut(s) 434, 694
BmiI GGNNCC 2 cut(s) 707, 864
BmrFI CCNGG 3 cut(s) 336, 698, 1304
BmsI GCATC 3 cut(s) 184, 820, 1092
BmtI GCTAGC 1 cut(s) 1343
BoxI GACNNNNGTC 1 cut(s) 439
BpiI GAAGAC 1 cut(s) 966
BpmI CTGGAG 1 cut(s) 959
Bpu10I CCTNAGC 1 cut(s) 651
Bpu14I TTCGAA 1 cut(s) 1259
BpuEI CTTGAG 1 cut(s) 985
BpuMI CCSGG 2 cut(s) 336, 1304
BsaHI GRCGYC 1 cut(s) 1137
BsaI GGTCTC 1 cut(s) 570
BsaJI CCNNGG 5 cut(s) 131, 313, 335, 840, 1140
BsaWI WCCGGW 1 cut(s) 669
Bsc4I CCNNNNNNNGG 4 cut(s) 158, 334, 508, 633
Bse1I ACTGG 2 cut(s) 198, 942
Bse3DI GCAATG 2 cut(s) 196, 783
BseBI CCWGG 1 cut(s) 698
BseDI CCNNGG 5 cut(s) 131, 313, 335, 840, 1140
BseLI CCNNNNNNNGG 4 cut(s) 158, 334, 508, 633
BseMI GCAATG 2 cut(s) 196, 783
BseMII CTCAG 4 cut(s) 600, 653, 665, 1110
BseNI ACTGG 2 cut(s) 198, 942
BseRI GAGGAG 1 cut(s) 956
BseSI GKGCMC 1 cut(s) 41
BseXI GCAGC 2 cut(s) 518, 1231
BseYI CCCAGC 1 cut(s) 866
Bsh1236I CGCG 2 cut(s) 133, 755
BshFI GGCC 1 cut(s) 358
BsiSI CCGG 3 cut(s) 335, 670, 1303
BslFI GGGAC 1 cut(s) 1148
BslI CCNNNNNNNGG 4 cut(s) 158, 334, 508, 633
BsmAI GTCTC 4 cut(s) 391, 570, 1181, 1413
BsmFI GGGAC 1 cut(s) 1148
BsnI GGCC 1 cut(s) 358
Bso31I GGTCTC 1 cut(s) 570
Bsp119I TTCGAA 1 cut(s) 1259
Bsp1286I GDGCHC 3 cut(s) 41, 619, 640
Bsp1407I TGTACA 1 cut(s) 453
Bsp143I GATC 6 cut(s) 154, 862, 1072, 1231, 1311, 1393
BspACI CCGC 6 cut(s) 131, 133, 509, 753, 1111, 1336
BspANI GGCC 1 cut(s) 358
BspCNI CTCAG 4 cut(s) 601, 652, 664, 1111
BspFNI CGCG 2 cut(s) 133, 755
BspLI GGNNCC 2 cut(s) 707, 864
BspMAI CTGCAG 1 cut(s) 624
BspMI ACCTGC 1 cut(s) 1265
BspOI GCTAGC 1 cut(s) 1343
BspPI GGATC 4 cut(s) 857, 870, 1067, 1401
BspT104I TTCGAA 1 cut(s) 1259
BspTNI GGTCTC 1 cut(s) 570
BsrDI GCAATG 2 cut(s) 196, 783
BsrGI TGTACA 1 cut(s) 453
BsrI ACTGG 2 cut(s) 198, 942
BssECI CCNNGG 5 cut(s) 131, 313, 335, 840, 1140
BssMI GATC 6 cut(s) 154, 862, 1072, 1231, 1311, 1393
BssNAI GTATAC 1 cut(s) 1300
BssNI GRCGYC 1 cut(s) 1137
BssT1I CCWWGG 3 cut(s) 313, 840, 1140
Bst1107I GTATAC 1 cut(s) 1300
Bst2UI CCWGG 1 cut(s) 698
Bst4CI ACNGT 3 cut(s) 688, 986, 1081
Bst6I CTCTTC 1 cut(s) 1118
BstACI GRCGYC 1 cut(s) 1137
BstAPI GCANNNNNTGC 1 cut(s) 1244
BstAUI TGTACA 1 cut(s) 453
BstBI TTCGAA 1 cut(s) 1259
BstC8I GCNNGC 4 cut(s) 110, 138, 809, 1341
BstDEI CTNAG 5 cut(s) 444, 609, 639, 651, 1119
BstDSI CCRYGG 1 cut(s) 131
BstFNI CGCG 2 cut(s) 133, 755
BstKTI GATC 6 cut(s) 157, 865, 1075, 1234, 1314, 1396
BstMAI GTCTC 4 cut(s) 391, 570, 1181, 1413
BstMBI GATC 6 cut(s) 154, 862, 1072, 1231, 1311, 1393
BstMWI GCNNNNNNNGC 3 cut(s) 142, 721, 1244
BstNI CCWGG 1 cut(s) 698
BstNSI RCATGY 1 cut(s) 13
BstPAI GACNNNNGTC 1 cut(s) 439
BstSCI CCNGG 3 cut(s) 334, 696, 1302
BstSFI CTRYAG 1 cut(s) 620
BstSLI GKGCMC 1 cut(s) 41
BstUI CGCG 2 cut(s) 133, 755
BstV1I GCAGC 2 cut(s) 518, 1231
BstV2I GAAGAC 1 cut(s) 966
BstX2I RGATCY 1 cut(s) 862
BstYI RGATCY 1 cut(s) 862
BstZ17I GTATAC 1 cut(s) 1300
BsuRI GGCC 1 cut(s) 358
BtgI CCRYGG 1 cut(s) 131
BtsIMutI CAGTG 2 cut(s) 205, 1498
BveI ACCTGC 1 cut(s) 1265
Cac8I GCNNGC 4 cut(s) 110, 138, 809, 1341
Cfr13I GGNCC 2 cut(s) 434, 694
Cfr42I CCGCGG 1 cut(s) 134
CseI GACGC 2 cut(s) 71, 1145
Csp6I GTAC 6 cut(s) 93, 252, 454, 658, 874, 987
CviAII CATG 7 cut(s) 10, 76, 574, 598, 710, 1324, 1455
CviQI GTAC 6 cut(s) 93, 252, 454, 658, 874, 987
DdeI CTNAG 5 cut(s) 444, 609, 639, 651, 1119
DpnI GATC 6 cut(s) 156, 864, 1074, 1233, 1313, 1395
DpnII GATC 6 cut(s) 154, 862, 1072, 1231, 1311, 1393
Eam1104I CTCTTC 1 cut(s) 1118
EarI CTCTTC 1 cut(s) 1118
Eco130I CCWWGG 3 cut(s) 313, 840, 1140
Eco147I AGGCCT 1 cut(s) 358
Eco24I GRGCYC 2 cut(s) 619, 640
Eco31I GGTCTC 1 cut(s) 570
Eco47I GGWCC 2 cut(s) 434, 694
Eco57I CTGAAG 3 cut(s) 237, 276, 1406
EcoO109I RGGNCCY 1 cut(s) 694
EcoRII CCWGG 1 cut(s) 696
EcoT14I CCWWGG 3 cut(s) 313, 840, 1140
EcoT22I ATGCAT 1 cut(s) 1010
EcoT38I GRGCYC 2 cut(s) 619, 640
ErhI CCWWGG 3 cut(s) 313, 840, 1140
FaeI CATG 7 cut(s) 13, 79, 577, 601, 713, 1327, 1458
FalI AAGNNNNNCTT 2 cut(s) 129, 161
FaqI GGGAC 1 cut(s) 1148
FatI CATG 7 cut(s) 9, 75, 573, 597, 709, 1323, 1454
FauNDI CATATG 2 cut(s) 918, 1291
FbaI TGATCA 1 cut(s) 1311
FblI GTMKAC 1 cut(s) 1299
Fnu4HI GCNGC 5 cut(s) 134, 507, 1111, 1245, 1337
FriOI GRGCYC 2 cut(s) 619, 640
Fsp4HI GCNGC 5 cut(s) 134, 507, 1111, 1245, 1337
FspBI CTAG 5 cut(s) 87, 747, 815, 827, 1340
GluI GCNGC 5 cut(s) 134, 507, 1111, 1245, 1337
GsaI CCCAGC 1 cut(s) 870
GsuI CTGGAG 1 cut(s) 959
HaeIII GGCC 1 cut(s) 358
HapII CCGG 3 cut(s) 335, 670, 1303
HgaI GACGC 2 cut(s) 71, 1145
Hin1I GRCGYC 1 cut(s) 1137
Hin1II CATG 7 cut(s) 13, 79, 577, 601, 713, 1327, 1458
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HindIII AAGCTT 3 cut(s) 143, 805, 1438
HinfI GANTC 4 cut(s) 25, 162, 278, 757
HpaII CCGG 3 cut(s) 335, 670, 1303
HphI GGTGA 3 cut(s) 79, 399, 793
Hpy166II GTNNAC 6 cut(s) 166, 252, 454, 547, 744, 1300
Hpy188I TCNGA 6 cut(s) 161, 283, 642, 1120, 1227, 1316
Hpy188III TCNNGA 9 cut(s) 152, 175, 396, 584, 608, 908, 1036, 1065, 1397
Hpy8I GTNNAC 6 cut(s) 166, 252, 454, 547, 744, 1300
HpyAV CCTTC 3 cut(s) 131, 402, 637
HpyCH4III ACNGT 3 cut(s) 688, 986, 1081
HpyCH4IV ACGT 1 cut(s) 1296
HpyF10VI GCNNNNNNNGC 3 cut(s) 142, 721, 1244
HpyF3I CTNAG 5 cut(s) 444, 609, 639, 651, 1119
HpySE526I ACGT 1 cut(s) 1296
Hsp92I GRCGYC 1 cut(s) 1137
Hsp92II CATG 7 cut(s) 13, 79, 577, 601, 713, 1327, 1458
Ksp22I TGATCA 1 cut(s) 1311
KspI CCGCGG 1 cut(s) 134
Kzo9I GATC 6 cut(s) 154, 862, 1072, 1231, 1311, 1393
LmnI GCTCC 1 cut(s) 943
Lsp1109I GCAGC 2 cut(s) 518, 1231
LweI GCATC 3 cut(s) 184, 820, 1092
MaeI CTAG 5 cut(s) 87, 747, 815, 827, 1340
MaeII ACGT 1 cut(s) 1296
MaeIII GTNAC 4 cut(s) 67, 303, 593, 1486
MalI GATC 6 cut(s) 156, 864, 1074, 1233, 1313, 1395
MboI GATC 6 cut(s) 154, 862, 1072, 1231, 1311, 1393
MflI RGATCY 1 cut(s) 862
MhlI GDGCHC 3 cut(s) 41, 619, 640
MlyI GAGTC 2 cut(s) 171, 766
MmeI TCCRAC 2 cut(s) 1100, 1371
Mph1103I ATGCAT 1 cut(s) 1010
MroXI GAANNNNTTC 1 cut(s) 297
MseI TTAA 5 cut(s) 426, 729, 795, 971, 1266
MslI CAYNNNNRTG 1 cut(s) 1456
MspA1I CMGCKG 3 cut(s) 133, 509, 655
MspI CCGG 3 cut(s) 335, 670, 1303
MspR9I CCNGG 3 cut(s) 336, 698, 1304
MvaI CCWGG 1 cut(s) 698
MvnI CGCG 2 cut(s) 133, 755
MwoI GCNNNNNNNGC 3 cut(s) 142, 721, 1244
NciI CCSGG 2 cut(s) 336, 1304
NdeI CATATG 2 cut(s) 918, 1291
NdeII GATC 6 cut(s) 154, 862, 1072, 1231, 1311, 1393
NheI GCTAGC 1 cut(s) 1339
NlaIII CATG 7 cut(s) 13, 79, 577, 601, 713, 1327, 1458
NlaIV GGNNCC 2 cut(s) 707, 864
NmuCI GTSAC 3 cut(s) 67, 303, 593
NsiI ATGCAT 1 cut(s) 1010
NspI RCATGY 1 cut(s) 13
NspV TTCGAA 1 cut(s) 1259
PceI AGGCCT 1 cut(s) 358
PdmI GAANNNNTTC 1 cut(s) 297
PfeI GAWTC 2 cut(s) 25, 278
PkrI GCNGC 5 cut(s) 135, 508, 1112, 1246, 1338
PleI GAGTC 2 cut(s) 170, 765
PpsI GAGTC 2 cut(s) 170, 765
PpuMI RGGWCCY 1 cut(s) 694
PshAI GACNNNNGTC 1 cut(s) 439
PsiI TTATAA 1 cut(s) 381
Psp5II RGGWCCY 1 cut(s) 694
Psp6I CCWGG 1 cut(s) 696
PspFI CCCAGC 1 cut(s) 866
PspGI CCWGG 1 cut(s) 696
PspN4I GGNNCC 2 cut(s) 707, 864
PspPI GGNCC 2 cut(s) 434, 694
PspPPI RGGWCCY 1 cut(s) 694
PstI CTGCAG 1 cut(s) 624
PsuI RGATCY 1 cut(s) 862
PvuII CAGCTG 1 cut(s) 655
RsaI GTAC 6 cut(s) 94, 253, 455, 659, 875, 988
RsaNI GTAC 6 cut(s) 93, 252, 454, 658, 874, 987
RseI CAYNNNNRTG 1 cut(s) 1456
SacII CCGCGG 1 cut(s) 134
SaqAI TTAA 5 cut(s) 426, 729, 795, 971, 1266
SatI GCNGC 5 cut(s) 134, 507, 1111, 1245, 1337
Sau3AI GATC 6 cut(s) 154, 862, 1072, 1231, 1311, 1393
Sau96I GGNCC 2 cut(s) 434, 694
SchI GAGTC 2 cut(s) 171, 766
ScrFI CCNGG 3 cut(s) 336, 698, 1304
SduI GDGCHC 3 cut(s) 41, 619, 640
SfaNI GCATC 3 cut(s) 184, 820, 1092
SfcI CTRYAG 1 cut(s) 620
Sfr303I CCGCGG 1 cut(s) 134
SfuI TTCGAA 1 cut(s) 1259
SgrBI CCGCGG 1 cut(s) 134
SinI GGWCC 2 cut(s) 434, 694
SmiMI CAYNNNNRTG 1 cut(s) 1456
SmlI CTYRAG 1 cut(s) 964
SmoI CTYRAG 1 cut(s) 964
SpeI ACTAGT 1 cut(s) 746
SseBI AGGCCT 1 cut(s) 358
SsiI CCGC 6 cut(s) 131, 133, 509, 753, 1111, 1336
SspMI CTAG 5 cut(s) 87, 747, 815, 827, 1340
StuI AGGCCT 1 cut(s) 358
StyD4I CCNGG 3 cut(s) 334, 696, 1302
StyI CCWWGG 3 cut(s) 313, 840, 1140
TaaI ACNGT 3 cut(s) 688, 986, 1081
TaiI ACGT 1 cut(s) 1299
TaqI TCGA 6 cut(s) 388, 395, 683, 1035, 1198, 1259
TatI WGTACW 4 cut(s) 92, 251, 453, 986
TauI GCSGC 3 cut(s) 136, 1113, 1339
TfiI GAWTC 2 cut(s) 25, 278
Tru1I TTAA 5 cut(s) 426, 729, 795, 971, 1266
Tru9I TTAA 5 cut(s) 426, 729, 795, 971, 1266
TscAI CASTG 1 cut(s) 205
TseFI GTSAC 3 cut(s) 67, 303, 593
TseI GCWGC 2 cut(s) 506, 1244
Tsp45I GTSAC 3 cut(s) 67, 303, 593
TspDTI ATGAA 5 cut(s) 64, 300, 781, 1013, 1440
TspRI CASTG 1 cut(s) 205
VpaK11BI GGWCC 2 cut(s) 434, 694
XapI RAATTY 4 cut(s) 46, 1022, 1317, 1494
XceI RCATGY 1 cut(s) 13
XmiI GTMKAC 1 cut(s) 1299
XmnI GAANNNNTTC 1 cut(s) 297
XspI CTAG 5 cut(s) 87, 747, 815, 827, 1340
Zsp2I ATGCAT 1 cut(s) 1010
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.