Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0013270

Physical Location & Seq

Genomic Coordinates Reverse (-)

31098297 .. 31100425

Gene Structure 2129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G024910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGTGCTTCCTAGTAGTACAAGGAGAAGCCTGCCCAAGAACCTTCGCTACCCGCGGCAAGCAAAGCTTCCTCCTGATCTCGGAATCAACCAATTCTTGAACAAGACACGCAATGATTCCAGTGAGCCCTTACAAGAAATGCTGTTAAGATTGGACCCATATCTAAGCAAGTGTACAAGAACCCCAAATGCCCTTGTTGGTTTGGCAAGGGAAATTAGAAGCCTTGGAGCAGATAACGATGTGGGGATAGTTCTGAACAAGAGGGTTCAGTTTCTGCGAAAAGGGTCTCTCTCCATGACAATTCGGGAATTGGGTCACATGGGGCTTCCTGAGAAGGCTCTGCAGACCTTCTGTTGGGCTCAGAAACAGCCTCAGCTCTACCTGTCTGTCTCTCATTTTGTTGTGTTCAGAACGCCTCAGCTCTACCCTGATAACCAGATTTCGGGTTGGACAGGTGAGGTGCCGTTCAATTTGGATGCTTTCAGTTGTTTGGCTGGTGGTTGTGTGAGATGGTTCATTAGAGGAATGGACAATCTTGGAGAAAGAGAAGACTTGAATTTAAGCCAGCAGCAAAAAAGGTCCGTCTCTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_3

Protein Analysis

197

Amino Acids

22.37

Weight (kDa)

9.73

Isoelectric Point (pI)

57.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01860
fragaria_vesca	FvH4_5g25440
malus_domestica	MD00G1136800.v1.1 MD16G1284100.v1.1
prunus_persica	Prupe.5G010100_v2.0.a1 Prupe.5G010100_v2.0.a1 Prupe.5G010100_v2.0.a1
pyrus_communis	pycom16g26000
rosa_chinensis	RchiOBHm_Chr5g0066911
rosa_laevigata	RLG00000002634 RLG00000035892
rosa_roxburghii	Rroxscaffold_1G00014210
rosa_rugosa	Rorug05G0379600.1
rosa_samantha	Rh5BG456300 Rh5CG478400 Rh5DG471100
rosa_wichuraiana	Rw5G041080 Rw7G024910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	460
AccII	CGCG	1 cut(s)	55
AciI	CCGC	2 cut(s)	53, 55
AcsI	RAATTY	1 cut(s)	556
AfaI	GTAC	2 cut(s)	19, 175
AfiI	CCNNNNNNNGG	3 cut(s)	80, 354, 442
AgsI	TTSAA	3 cut(s)	100, 469, 556
AluBI	AGCT	3 cut(s)	67, 376, 421
AluI	AGCT	3 cut(s)	67, 376, 421
Alw26I	GTCTC	3 cut(s)	291, 394, 589
AlwNI	CAGNNNCTG	1 cut(s)	274
ApeKI	GCWGC	1 cut(s)	568
ApoI	RAATTY	1 cut(s)	556
AspS9I	GGNCC	2 cut(s)	154, 579
AsuHPI	GGTGA	1 cut(s)	467
AvaII	GGWCC	2 cut(s)	154, 579
BanI	GGYRCC	1 cut(s)	460
BanII	GRGCYC	2 cut(s)	129, 361
BbsI	GAAGAC	1 cut(s)	555
BbvCI	CCTCAGC	2 cut(s)	372, 417
BbvI	GCAGC	1 cut(s)	580
BccI	CCATC	1 cut(s)	504
BceAI	ACGGC	1 cut(s)	448
BcoDI	GTCTC	3 cut(s)	291, 394, 589
BfaI	CTAG	1 cut(s)	12
BfmI	CTRYAG	1 cut(s)	341
BisI	GCNGC	2 cut(s)	56, 569
BlsI	GCNGC	2 cut(s)	57, 570
Bme18I	GGWCC	2 cut(s)	154, 579
BmgT120I	GGNCC	2 cut(s)	154, 579
BmiI	GGNNCC	2 cut(s)	156, 462
BmsI	GCATC	1 cut(s)	466
BpiI	GAAGAC	1 cut(s)	555
Bpu10I	CCTNAGC	2 cut(s)	372, 417
BsaI	GGTCTC	1 cut(s)	291
BsaJI	CCNNGG	2 cut(s)	53, 223
Bsc4I	CCNNNNNNNGG	3 cut(s)	80, 354, 442
Bse1I	ACTGG	1 cut(s)	120
Bse3DI	GCAATG	1 cut(s)	118
BseDI	CCNNGG	2 cut(s)	53, 223
BseGI	GGATG	1 cut(s)	481
BseLI	CCNNNNNNNGG	3 cut(s)	80, 354, 442
BseMI	GCAATG	1 cut(s)	118
BseMII	CTCAG	4 cut(s)	321, 374, 386, 431
BseNI	ACTGG	1 cut(s)	120
BseXI	GCAGC	1 cut(s)	580
Bsh1236I	CGCG	1 cut(s)	55
BshNI	GGYRCC	1 cut(s)	460
BslI	CCNNNNNNNGG	3 cut(s)	80, 354, 442
BsmAI	GTCTC	3 cut(s)	291, 394, 589
BsmBI	CGTCTC	1 cut(s)	589
Bso31I	GGTCTC	1 cut(s)	291
Bsp1286I	GDGCHC	2 cut(s)	129, 361
Bsp1407I	TGTACA	1 cut(s)	173
Bsp143I	GATC	1 cut(s)	76
BspACI	CCGC	2 cut(s)	53, 55
BspCNI	CTCAG	4 cut(s)	322, 373, 385, 430
BspFNI	CGCG	1 cut(s)	55
BspLI	GGNNCC	2 cut(s)	156, 462
BspMAI	CTGCAG	1 cut(s)	345
BspT107I	GGYRCC	1 cut(s)	460
BspTNI	GGTCTC	1 cut(s)	291
BsrDI	GCAATG	1 cut(s)	118
BsrGI	TGTACA	1 cut(s)	173
BsrI	ACTGG	1 cut(s)	120
BssECI	CCNNGG	2 cut(s)	53, 223
BssMI	GATC	1 cut(s)	76
BssT1I	CCWWGG	1 cut(s)	223
BstAUI	TGTACA	1 cut(s)	173
BstC8I	GCNNGC	3 cut(s)	32, 60, 566
BstDEI	CTNAG	5 cut(s)	164, 330, 360, 372, 417
BstDSI	CCRYGG	1 cut(s)	53
BstF5I	GGATG	1 cut(s)	481
BstFNI	CGCG	1 cut(s)	55
BstKTI	GATC	1 cut(s)	79
BstMAI	GTCTC	3 cut(s)	291, 394, 589
BstMBI	GATC	1 cut(s)	76
BstMWI	GCNNNNNNNGC	1 cut(s)	64
BstSFI	CTRYAG	1 cut(s)	341
BstUI	CGCG	1 cut(s)	55
BstV1I	GCAGC	1 cut(s)	580
BstV2I	GAAGAC	1 cut(s)	555
BtgI	CCRYGG	1 cut(s)	53
BtsCI	GGATG	1 cut(s)	481
BtsIMutI	CAGTG	1 cut(s)	127
Cac8I	GCNNGC	3 cut(s)	32, 60, 566
CaiI	CAGNNNCTG	1 cut(s)	274
Cfr13I	GGNCC	2 cut(s)	154, 579
Cfr42I	CCGCGG	1 cut(s)	56
Csp6I	GTAC	2 cut(s)	18, 174
CviAII	CATG	2 cut(s)	295, 319
CviQI	GTAC	2 cut(s)	18, 174
DdeI	CTNAG	5 cut(s)	164, 330, 360, 372, 417
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	223
Eco24I	GRGCYC	2 cut(s)	129, 361
Eco31I	GGTCTC	1 cut(s)	291
Eco47I	GGWCC	2 cut(s)	154, 579
EcoT14I	CCWWGG	1 cut(s)	223
EcoT38I	GRGCYC	2 cut(s)	129, 361
ErhI	CCWWGG	1 cut(s)	223
Esp3I	CGTCTC	1 cut(s)	589
FaeI	CATG	2 cut(s)	298, 322
FaiI	YATR	3 cut(s)	160, 296, 320
FalI	AAGNNNNNCTT	2 cut(s)	51, 83
FatI	CATG	2 cut(s)	294, 318
FauI	CCCGC	1 cut(s)	60
Fnu4HI	GCNGC	2 cut(s)	56, 569
FokI	GGATG	1 cut(s)	488
FriOI	GRGCYC	2 cut(s)	129, 361
Fsp4HI	GCNGC	2 cut(s)	56, 569
FspBI	CTAG	1 cut(s)	12
GluI	GCNGC	2 cut(s)	56, 569
Hin1II	CATG	2 cut(s)	298, 322
HindIII	AAGCTT	1 cut(s)	65
HinfI	GANTC	2 cut(s)	84, 116
HphI	GGTGA	1 cut(s)	467
Hpy166II	GTNNAC	1 cut(s)	174
Hpy188I	TCNGA	4 cut(s)	83, 255, 363, 410
Hpy188III	TCNNGA	4 cut(s)	74, 97, 305, 329
Hpy8I	GTNNAC	1 cut(s)	174
HpyAV	CCTTC	3 cut(s)	53, 328, 358
HpyCH4V	TGCA	1 cut(s)	343
HpyF10VI	GCNNNNNNNGC	1 cut(s)	64
HpyF3I	CTNAG	5 cut(s)	164, 330, 360, 372, 417
Hsp92II	CATG	2 cut(s)	298, 322
KspI	CCGCGG	1 cut(s)	56
Kzo9I	GATC	1 cut(s)	76
LmnI	GCTCC	1 cut(s)	227
Lsp1109I	GCAGC	1 cut(s)	580
LweI	GCATC	1 cut(s)	466
MaeI	CTAG	1 cut(s)	12
MaeIII	GTNAC	1 cut(s)	314
MalI	GATC	1 cut(s)	78
MboI	GATC	1 cut(s)	76
MboII	GAAGA	1 cut(s)	560
MhlI	GDGCHC	2 cut(s)	129, 361
MluCI	AATT	6 cut(s)	92, 213, 300, 308, 469, 556
MmeI	TCCRAC	1 cut(s)	428
MnlI	CCTC	6 cut(s)	81, 255, 381, 426, 451, 515
MseI	TTAA	2 cut(s)	146, 560
MspA1I	CMGCKG	1 cut(s)	55
MvnI	CGCG	1 cut(s)	55
MwoI	GCNNNNNNNGC	1 cut(s)	64
NdeII	GATC	1 cut(s)	76
NlaIII	CATG	2 cut(s)	298, 322
NlaIV	GGNNCC	2 cut(s)	156, 462
NmuCI	GTSAC	1 cut(s)	314
PfeI	GAWTC	2 cut(s)	84, 116
PkrI	GCNGC	2 cut(s)	57, 570
PspN4I	GGNNCC	2 cut(s)	156, 462
PspPI	GGNCC	2 cut(s)	154, 579
PsrI	GAACNNNNNNTAC	2 cut(s)	32, 64
PstI	CTGCAG	1 cut(s)	345
PstNI	CAGNNNCTG	1 cut(s)	274
RsaI	GTAC	2 cut(s)	19, 175
RsaNI	GTAC	2 cut(s)	18, 174
SacII	CCGCGG	1 cut(s)	56
SaqAI	TTAA	2 cut(s)	146, 560
SatI	GCNGC	2 cut(s)	56, 569
Sau3AI	GATC	1 cut(s)	76
Sau96I	GGNCC	2 cut(s)	154, 579
SduI	GDGCHC	2 cut(s)	129, 361
SetI	ASST	9 cut(s)	45, 69, 350, 378, 384, 423, 457, 462, 581
SfaNI	GCATC	1 cut(s)	466
SfcI	CTRYAG	1 cut(s)	341
Sfr303I	CCGCGG	1 cut(s)	56
SgrBI	CCGCGG	1 cut(s)	56
SinI	GGWCC	2 cut(s)	154, 579
Sse9I	AATT	6 cut(s)	92, 213, 300, 308, 469, 556
SsiI	CCGC	2 cut(s)	53, 55
SspMI	CTAG	1 cut(s)	12
StyI	CCWWGG	1 cut(s)	223
TasI	AATT	6 cut(s)	92, 213, 300, 308, 469, 556
TatI	WGTACW	2 cut(s)	17, 173
TauI	GCSGC	1 cut(s)	58
TfiI	GAWTC	2 cut(s)	84, 116
Tru1I	TTAA	2 cut(s)	146, 560
Tru9I	TTAA	2 cut(s)	146, 560
TscAI	CASTG	1 cut(s)	127
TseFI	GTSAC	1 cut(s)	314
TseI	GCWGC	1 cut(s)	568
Tsp45I	GTSAC	1 cut(s)	314
TspDTI	ATGAA	1 cut(s)	505
TspGWI	ACGGA	1 cut(s)	571
TspRI	CASTG	1 cut(s)	127
VpaK11BI	GGWCC	2 cut(s)	154, 579
XapI	RAATTY	1 cut(s)	556
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.