Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0013270

Physical Location & Seq

Genomic Coordinates Reverse (-)

72461687 .. 72463123

Gene Structure 1437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G041080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1437 bp

ATGGATTGCATGGTCTTTGGTATGATTCCCATTTTGTGCCCGCAGAATTTTGCAAGGAATGATAGGGTGGCTTTCATGGTGCGTCCTAGTAGTACAAGGAGAAGAAGCCTGCCCAAGAACCTTCGCTATCCGCGGCAAGCAAAGCTTCCTCCTGATCTCGGAGTCAACCAATTCTTGAACAAGACAAGCAATGATGCCAGTGAGCCAGAGTTCCCTGAAGAAGAAGAAGAAAATTATACTGAAGATGGCGACATTGTTTGGGAATCGGATGAAATTGAAGCTATTCAGTCACTTTTCCAAGGGAGAATACCCCAAAAGCCGGGGAGTTTGAATAGGCAGAGGCCTCTACCACTCCCACTTCCTTACAAGGTTCGACCTTCGAGACTTCCATCACCCAAGAAAAATGCTGTTAAGATTGGACCAATGTCTAAGCAAGTGTACAAGAACCCCAATGCCCTTGTTGGTTTGGCAAGGGAAATTAGAAGCCTTGCAGCGGATAAAGATGTGGGCATAGTTCTCAACAAGAGGGTTCACTTTCTGCGAAAAGGGTCTCTCTCCATGACAATTCGGGAATTGGGTCACATGGGGCTTCCTGAGAGGGCTCTGCAGACCTTCTGTTGGGCTCAGAAACAGCCACAGCTGTACCCTGATGACCGGATTTTGAGTTCGACAGTTGAGGTCTTGGCAAGGAACCATGAGCTGAAACTGCCATTTAATTTGGACAAGTTCGCTAGTTCCGCGAGTCGTGGTGTGATTGAGGCAATGGTGAGAGGTTTCATTAAAGGAGGAAGCTTGCACCTAGCTTGGAAGCTAGTATCGGTAGCCAAGGATAATCAAAGGAAGCTGGATCCCAGCTTGTATGCCAAGCTAATAGTAGAGTTCGGGAAAAATCCTGATAAACATATGGTTGTAATGACCTTACTGGAGGAGCTTGGAGAAAGAGAAGACTTGAGTTTAAGCCAACAGGACTGTACTGCTATTATGAAAGTATGCATTAGGCTTGGAAAATTTGAAGTGGTCGAGAGTGTTTATGATTGGTTTAGACAATCTGGACACGATCCAACTGTCGTTATTTACACAACTTTGATTCACAGCCGCTACTCTGAGAAGAGGTACAGGGAGGCCTTGGCTGTGGTTTGGGAAATGGAGGCTTCAAATTGTCTCTTTGACTTTCCAGCTTATCGAGTTGTAATAAAACTTTTTGTTGCTCTGAATGATCTTGCAAGGGCAGCAAGATATTTTTCAAAACTTAAAGAAGCAGGTTTTACCCCAACATATGACGTATACCGGGATTTGATCAGAATTTACATGGTTTCTGGGCGGCTAGCCAAGTGTAGAGAGATTTGCAAGGAGGTAGAGATGGGAGGACTGAAGTTGGATCAAGAAACAATGTCTCATTTGTTGCAATTAGAAAGAGAGAAAAGGTTTGGTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_3

Protein Analysis

478

Amino Acids

54.78

Weight (kDa)

9.23

Isoelectric Point (pI)

46.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01860
fragaria_vesca	FvH4_5g25440
malus_domestica	MD00G1136800.v1.1 MD16G1284100.v1.1
prunus_persica	Prupe.5G010100_v2.0.a1 Prupe.5G010100_v2.0.a1 Prupe.5G010100_v2.0.a1
pyrus_communis	pycom16g26000
rosa_chinensis	RchiOBHm_Chr5g0066911
rosa_laevigata	RLG00000002634 RLG00000035892
rosa_roxburghii	Rroxscaffold_1G00014210
rosa_rugosa	Rorug05G0379600.1
rosa_samantha	Rh5BG456300 Rh5CG478400 Rh5DG471100
rosa_wichuraiana	Rw5G041080 Rw7G024910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1250
AccI	GTMKAC	1 cut(s)	1284
AccII	CGCG	2 cut(s)	133, 740
AciI	CCGC	7 cut(s)	41, 131, 133, 494, 738, 1096, 1321
AclWI	GGATC	4 cut(s)	842, 855, 1052, 1386
AcsI	RAATTY	3 cut(s)	46, 1007, 1302
AcuI	CTGAAG	3 cut(s)	237, 261, 1391
AfaI	GTAC	5 cut(s)	94, 440, 644, 973, 1115
AfiI	CCNNNNNNNGG	4 cut(s)	158, 319, 493, 618
AgsI	TTSAA	6 cut(s)	178, 278, 331, 1013, 1155, 1245
AloI	GAACNNNNNNTCC	2 cut(s)	649, 681
Alw26I	GTCTC	4 cut(s)	376, 555, 1166, 1398
AlwI	GGATC	4 cut(s)	842, 855, 1052, 1386
AoxI	GGCC	2 cut(s)	341, 1122
ApeKI	GCWGC	2 cut(s)	491, 1229
ApoI	RAATTY	3 cut(s)	46, 1007, 1302
Asp700I	GAANNNNTTC	1 cut(s)	282
AspS9I	GGNCC	1 cut(s)	419
AsuC2I	CCSGG	2 cut(s)	321, 1289
AsuHPI	GGTGA	2 cut(s)	384, 778
AsuNHI	GCTAGC	1 cut(s)	1324
AvaII	GGWCC	1 cut(s)	419
BaeGI	GKGCMC	1 cut(s)	41
BaeI	ACNNNNGTAYC	2 cut(s)	626, 659
BamHI	GGATCC	1 cut(s)	847
BanII	GRGCYC	2 cut(s)	604, 625
BbsI	GAAGAC	1 cut(s)	951
BbvI	GCAGC	2 cut(s)	503, 1241
BccI	CCATC	3 cut(s)	239, 397, 1354
BclI	TGATCA	1 cut(s)	1296
BcnI	CCSGG	2 cut(s)	321, 1289
BcoDI	GTCTC	4 cut(s)	376, 555, 1166, 1398
BfaI	CTAG	5 cut(s)	87, 732, 800, 812, 1325
BfmI	CTRYAG	1 cut(s)	605
BfuAI	ACCTGC	1 cut(s)	1250
BisI	GCNGC	5 cut(s)	134, 492, 1096, 1230, 1322
BlsI	GCNGC	5 cut(s)	135, 493, 1097, 1231, 1323
Bme1390I	CCNGG	2 cut(s)	321, 1289
Bme18I	GGWCC	1 cut(s)	419
BmgT120I	GGNCC	1 cut(s)	419
BmiI	GGNNCC	2 cut(s)	692, 849
BmrFI	CCNGG	2 cut(s)	321, 1289
BmsI	GCATC	1 cut(s)	184
BmtI	GCTAGC	1 cut(s)	1328
BoxI	GACNNNNGTC	1 cut(s)	424
BpiI	GAAGAC	1 cut(s)	951
BpmI	CTGGAG	1 cut(s)	944
BpuEI	CTTGAG	1 cut(s)	970
BpuMI	CCSGG	2 cut(s)	321, 1289
BsaI	GGTCTC	1 cut(s)	555
BsaJI	CCNNGG	5 cut(s)	131, 298, 320, 825, 1125
BsaWI	WCCGGW	1 cut(s)	654
Bsc4I	CCNNNNNNNGG	4 cut(s)	158, 319, 493, 618
Bse1I	ACTGG	2 cut(s)	198, 927
Bse3DI	GCAATG	2 cut(s)	196, 768
BseDI	CCNNGG	5 cut(s)	131, 298, 320, 825, 1125
BseGI	GGATG	1 cut(s)	274
BseLI	CCNNNNNNNGG	4 cut(s)	158, 319, 493, 618
BseMI	GCAATG	2 cut(s)	196, 768
BseMII	CTCAG	3 cut(s)	585, 638, 1095
BseNI	ACTGG	2 cut(s)	198, 927
BseRI	GAGGAG	1 cut(s)	941
BseSI	GKGCMC	1 cut(s)	41
BseXI	GCAGC	2 cut(s)	503, 1241
BseYI	CCCAGC	1 cut(s)	851
Bsh1236I	CGCG	2 cut(s)	133, 740
BshFI	GGCC	2 cut(s)	343, 1124
BsiSI	CCGG	3 cut(s)	320, 655, 1288
BslI	CCNNNNNNNGG	4 cut(s)	158, 319, 493, 618
BsmAI	GTCTC	4 cut(s)	376, 555, 1166, 1398
BsnI	GGCC	2 cut(s)	343, 1124
Bso31I	GGTCTC	1 cut(s)	555
Bsp1286I	GDGCHC	3 cut(s)	41, 604, 625
Bsp1407I	TGTACA	1 cut(s)	438
Bsp143I	GATC	6 cut(s)	154, 847, 1057, 1216, 1296, 1378
BspACI	CCGC	7 cut(s)	41, 131, 133, 494, 738, 1096, 1321
BspANI	GGCC	2 cut(s)	343, 1124
BspCNI	CTCAG	3 cut(s)	586, 637, 1096
BspFNI	CGCG	2 cut(s)	133, 740
BspLI	GGNNCC	2 cut(s)	692, 849
BspMAI	CTGCAG	1 cut(s)	609
BspMI	ACCTGC	1 cut(s)	1250
BspOI	GCTAGC	1 cut(s)	1328
BspPI	GGATC	4 cut(s)	842, 855, 1052, 1386
BspTNI	GGTCTC	1 cut(s)	555
BsrDI	GCAATG	2 cut(s)	196, 768
BsrGI	TGTACA	1 cut(s)	438
BsrI	ACTGG	2 cut(s)	198, 927
BssECI	CCNNGG	5 cut(s)	131, 298, 320, 825, 1125
BssMI	GATC	6 cut(s)	154, 847, 1057, 1216, 1296, 1378
BssNAI	GTATAC	1 cut(s)	1285
BssT1I	CCWWGG	3 cut(s)	298, 825, 1125
Bst1107I	GTATAC	1 cut(s)	1285
Bst4CI	ACNGT	3 cut(s)	673, 971, 1066
Bst6I	CTCTTC	1 cut(s)	1103
BstAUI	TGTACA	1 cut(s)	438
BstC8I	GCNNGC	5 cut(s)	41, 110, 138, 794, 1326
BstDEI	CTNAG	4 cut(s)	429, 594, 624, 1104
BstDSI	CCRYGG	1 cut(s)	131
BstF5I	GGATG	1 cut(s)	274
BstFNI	CGCG	2 cut(s)	133, 740
BstKTI	GATC	6 cut(s)	157, 850, 1060, 1219, 1299, 1381
BstMAI	GTCTC	4 cut(s)	376, 555, 1166, 1398
BstMBI	GATC	6 cut(s)	154, 847, 1057, 1216, 1296, 1378
BstMWI	GCNNNNNNNGC	4 cut(s)	142, 706, 737, 1229
BstPAI	GACNNNNGTC	1 cut(s)	424
BstSCI	CCNGG	2 cut(s)	319, 1287
BstSFI	CTRYAG	1 cut(s)	605
BstSLI	GKGCMC	1 cut(s)	41
BstUI	CGCG	2 cut(s)	133, 740
BstV1I	GCAGC	2 cut(s)	503, 1241
BstV2I	GAAGAC	1 cut(s)	951
BstX2I	RGATCY	1 cut(s)	847
BstYI	RGATCY	1 cut(s)	847
BstZ17I	GTATAC	1 cut(s)	1285
BsuRI	GGCC	2 cut(s)	343, 1124
BtgI	CCRYGG	1 cut(s)	131
BtsCI	GGATG	1 cut(s)	274
BtsIMutI	CAGTG	1 cut(s)	205
BveI	ACCTGC	1 cut(s)	1250
Cac8I	GCNNGC	5 cut(s)	41, 110, 138, 794, 1326
Cfr13I	GGNCC	1 cut(s)	419
Cfr42I	CCGCGG	1 cut(s)	134
CseI	GACGC	1 cut(s)	71
Csp6I	GTAC	5 cut(s)	93, 439, 643, 972, 1114
CviAII	CATG	6 cut(s)	10, 76, 559, 583, 695, 1309
CviQI	GTAC	5 cut(s)	93, 439, 643, 972, 1114
DdeI	CTNAG	4 cut(s)	429, 594, 624, 1104
DpnI	GATC	6 cut(s)	156, 849, 1059, 1218, 1298, 1380
DpnII	GATC	6 cut(s)	154, 847, 1057, 1216, 1296, 1378
Eam1104I	CTCTTC	1 cut(s)	1103
EarI	CTCTTC	1 cut(s)	1103
Eco130I	CCWWGG	3 cut(s)	298, 825, 1125
Eco147I	AGGCCT	2 cut(s)	343, 1124
Eco24I	GRGCYC	2 cut(s)	604, 625
Eco31I	GGTCTC	1 cut(s)	555
Eco47I	GGWCC	1 cut(s)	419
Eco57I	CTGAAG	3 cut(s)	237, 261, 1391
EcoT14I	CCWWGG	3 cut(s)	298, 825, 1125
EcoT22I	ATGCAT	1 cut(s)	995
EcoT38I	GRGCYC	2 cut(s)	604, 625
ErhI	CCWWGG	3 cut(s)	298, 825, 1125
FaeI	CATG	6 cut(s)	13, 79, 562, 586, 698, 1312
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FatI	CATG	6 cut(s)	9, 75, 558, 582, 694, 1308
FauI	CCCGC	1 cut(s)	48
FauNDI	CATATG	2 cut(s)	903, 1276
FbaI	TGATCA	1 cut(s)	1296
FblI	GTMKAC	1 cut(s)	1284
Fnu4HI	GCNGC	5 cut(s)	134, 492, 1096, 1230, 1322
FokI	GGATG	1 cut(s)	281
FriOI	GRGCYC	2 cut(s)	604, 625
Fsp4HI	GCNGC	5 cut(s)	134, 492, 1096, 1230, 1322
FspBI	CTAG	5 cut(s)	87, 732, 800, 812, 1325
GluI	GCNGC	5 cut(s)	134, 492, 1096, 1230, 1322
GsaI	CCCAGC	1 cut(s)	855
GsuI	CTGGAG	1 cut(s)	944
HaeIII	GGCC	2 cut(s)	343, 1124
HapII	CCGG	3 cut(s)	320, 655, 1288
HgaI	GACGC	1 cut(s)	71
Hin1II	CATG	6 cut(s)	13, 79, 562, 586, 698, 1312
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HindIII	AAGCTT	2 cut(s)	143, 790
HinfI	GANTC	5 cut(s)	25, 162, 263, 742, 1087
HpaII	CCGG	3 cut(s)	320, 655, 1288
HphI	GGTGA	2 cut(s)	384, 778
Hpy166II	GTNNAC	4 cut(s)	166, 439, 532, 1285
Hpy188I	TCNGA	6 cut(s)	161, 268, 627, 1105, 1212, 1301
Hpy8I	GTNNAC	4 cut(s)	166, 439, 532, 1285
HpyAV	CCTTC	3 cut(s)	131, 387, 622
HpyCH4III	ACNGT	3 cut(s)	673, 971, 1066
HpyCH4IV	ACGT	1 cut(s)	1281
HpyCH4V	TGCA	9 cut(s)	9, 53, 491, 607, 796, 993, 1223, 1347, 1405
HpyF10VI	GCNNNNNNNGC	4 cut(s)	142, 706, 737, 1229
HpyF3I	CTNAG	4 cut(s)	429, 594, 624, 1104
HpySE526I	ACGT	1 cut(s)	1281
Hsp92II	CATG	6 cut(s)	13, 79, 562, 586, 698, 1312
Ksp22I	TGATCA	1 cut(s)	1296
KspI	CCGCGG	1 cut(s)	134
Kzo9I	GATC	6 cut(s)	154, 847, 1057, 1216, 1296, 1378
LmnI	GCTCC	1 cut(s)	928
Lsp1109I	GCAGC	2 cut(s)	503, 1241
LweI	GCATC	1 cut(s)	184
MaeI	CTAG	5 cut(s)	87, 732, 800, 812, 1325
MaeII	ACGT	1 cut(s)	1281
MaeIII	GTNAC	2 cut(s)	288, 578
MalI	GATC	6 cut(s)	156, 849, 1059, 1218, 1298, 1380
MboI	GATC	6 cut(s)	154, 847, 1057, 1216, 1296, 1378
MboII	GAAGA	8 cut(s)	114, 230, 233, 236, 239, 254, 956, 1120
MflI	RGATCY	1 cut(s)	847
MhlI	GDGCHC	3 cut(s)	41, 604, 625
MlyI	GAGTC	2 cut(s)	171, 751
MmeI	TCCRAC	2 cut(s)	1085, 1356
Mph1103I	ATGCAT	1 cut(s)	995
MroXI	GAANNNNTTC	1 cut(s)	282
MseI	TTAA	6 cut(s)	411, 714, 780, 956, 1251, 1435
MspA1I	CMGCKG	3 cut(s)	133, 494, 640
MspI	CCGG	3 cut(s)	320, 655, 1288
MspR9I	CCNGG	2 cut(s)	321, 1289
MvnI	CGCG	2 cut(s)	133, 740
MwoI	GCNNNNNNNGC	4 cut(s)	142, 706, 737, 1229
NciI	CCSGG	2 cut(s)	321, 1289
NdeI	CATATG	2 cut(s)	903, 1276
NdeII	GATC	6 cut(s)	154, 847, 1057, 1216, 1296, 1378
NheI	GCTAGC	1 cut(s)	1324
NlaIII	CATG	6 cut(s)	13, 79, 562, 586, 698, 1312
NlaIV	GGNNCC	2 cut(s)	692, 849
NmuCI	GTSAC	2 cut(s)	288, 578
NsiI	ATGCAT	1 cut(s)	995
PceI	AGGCCT	2 cut(s)	343, 1124
PdmI	GAANNNNTTC	1 cut(s)	282
PfeI	GAWTC	3 cut(s)	25, 263, 1087
PkrI	GCNGC	5 cut(s)	135, 493, 1097, 1231, 1323
PleI	GAGTC	2 cut(s)	170, 750
PpsI	GAGTC	2 cut(s)	170, 750
PshAI	GACNNNNGTC	1 cut(s)	424
PspFI	CCCAGC	1 cut(s)	851
PspN4I	GGNNCC	2 cut(s)	692, 849
PspPI	GGNCC	1 cut(s)	419
PstI	CTGCAG	1 cut(s)	609
PsuI	RGATCY	1 cut(s)	847
PvuII	CAGCTG	1 cut(s)	640
RsaI	GTAC	5 cut(s)	94, 440, 644, 973, 1115
RsaNI	GTAC	5 cut(s)	93, 439, 643, 972, 1114
SacII	CCGCGG	1 cut(s)	134
SaqAI	TTAA	6 cut(s)	411, 714, 780, 956, 1251, 1435
SatI	GCNGC	5 cut(s)	134, 492, 1096, 1230, 1322
Sau3AI	GATC	6 cut(s)	154, 847, 1057, 1216, 1296, 1378
Sau96I	GGNCC	1 cut(s)	419
SchI	GAGTC	2 cut(s)	171, 751
ScrFI	CCNGG	2 cut(s)	321, 1289
SduI	GDGCHC	3 cut(s)	41, 604, 625
SfaNI	GCATC	1 cut(s)	184
SfcI	CTRYAG	1 cut(s)	605
Sfr303I	CCGCGG	1 cut(s)	134
SgrBI	CCGCGG	1 cut(s)	134
SinI	GGWCC	1 cut(s)	419
SmlI	CTYRAG	1 cut(s)	949
SmoI	CTYRAG	1 cut(s)	949
SseBI	AGGCCT	2 cut(s)	343, 1124
SsiI	CCGC	7 cut(s)	41, 131, 133, 494, 738, 1096, 1321
SspMI	CTAG	5 cut(s)	87, 732, 800, 812, 1325
StuI	AGGCCT	2 cut(s)	343, 1124
StyD4I	CCNGG	2 cut(s)	319, 1287
StyI	CCWWGG	3 cut(s)	298, 825, 1125
TaaI	ACNGT	3 cut(s)	673, 971, 1066
TaiI	ACGT	1 cut(s)	1284
TaqI	TCGA	5 cut(s)	373, 380, 668, 1020, 1183
TatI	WGTACW	3 cut(s)	92, 438, 971
TauI	GCSGC	3 cut(s)	136, 1098, 1324
TfiI	GAWTC	3 cut(s)	25, 263, 1087
Tru1I	TTAA	6 cut(s)	411, 714, 780, 956, 1251, 1435
Tru9I	TTAA	6 cut(s)	411, 714, 780, 956, 1251, 1435
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	2 cut(s)	288, 578
TseI	GCWGC	2 cut(s)	491, 1229
Tsp45I	GTSAC	2 cut(s)	288, 578
TspDTI	ATGAA	4 cut(s)	64, 285, 766, 998
TspRI	CASTG	1 cut(s)	205
VpaK11BI	GGWCC	1 cut(s)	419
XapI	RAATTY	3 cut(s)	46, 1007, 1302
XmiI	GTMKAC	1 cut(s)	1284
XmnI	GAANNNNTTC	1 cut(s)	282
XspI	CTAG	5 cut(s)	87, 732, 800, 812, 1325
Zsp2I	ATGCAT	1 cut(s)	995

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.