Rroxscaffold_1G00014210

Pentatricopeptide repeat domain

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
17513678 .. 17516870
3193 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00014210.1

Sequence Viewer

Length: 1461 bp
ATGGATTGCATGGTCTTTGGTATGATTCCCATTTTGTGCCCACAGAATTTTGCAAGGAATGATAGGGTGGCTTTCATGGTGCGTCCTAGTAGTACAAGGAGAAGAAGCCTGCCCAAGAACCTTCGCTATCCTCGGCAAGCAAAGCTTCCTCCTGATCTCGGAGTCAACCAATTCTTGAATAAGACAAGCAATGATGCCAGTGAGCCAGAGTTCCCTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGTATACTGAAGATGGCGACCTTGTTTGGGAATCGGATGAAATTGAAGCTATTCAGTCACTTTTCCAAGGGAGAATACCCCAAAAGCCGGGGAGTTTGAATAGGCAGAGGCCTCTACCACTCCCACTTCCTTACAAGGTTCGACCTTCGAGACTTCCATCACCCAAGAAAAATGCTGTTAAGATTGGACCAATGTCTAAACAAGTGTACAAGAACCCCAATGCCCTTGTTGGTTTGGCAAGGGAAATTAGAAGCCTTGCAGCGGATAAAGATGTGGGCATAGTTCTCAACAAGAGGGTTCACTTTCTGCGAAAAGGGTCTCTCTCCATGACAATTCGGGAATTGGGTCACATGGGGCTTCCTGAGAGGGCTCTGCAGACCTTCTGTTGGGCTCAGAAACAGCCTCAGCTCTACCCTGATGACCGGATTTTGAGTTCGACAGTTGAGGTCCTGGCAAGGAACCATGAGCTGAAACTGCCATTTAATTTGGACAAGTTCACTAGTTCCGCGAGTCGTAGTGTGATTGAGGCAATGGTGAGAGGATTCATTAAAGGAGGAAGCTTGCATCTAGCTTGGAAGCTAGTATCGGTAGCCAAGGATAATCAAAGGAAGCTGGATCCCAGCTTGTACGCCAAGCTAATAGTAGAGTTTGGGAAAAATCCTGATAAACATATGGTTGTAATGACCTTACTGGAGGAGCTTGGAGAAAGAGAAGACTTGAGTTTAAGCCAACAGGACTGTACTGCTATTATGAAAGTATGCATTAGGCTTGGAAAATTTGAAGTGGTCGAGAGTGTTTATGATTGGTTTAGACAATCTGGACACGATCCAACTGTCGTTATTTACACAACTTTGATTCACAGCCGCTACTCTGAGAAGAGATACAGGGAGGCCTTGGCTGTGGTTTGGGAAATGGAGGCTTCAAATTGTCTCTTTGACTTTCCAGCTTATCGAGTTGTAATAAAACTTTTTGTTGCTCTGAATGATCTTGCAAGGGCTGCAAGATATTTTTCGAAACTTAAAGAAGCAGGTTTTACCCCAACATATGACGTATACCGGGATTTGATCAGAATTTACATGGTTTCTGGGCGGCTAGCCAAGTGTAGAGAGATTTGCAAGGAGGTAGAGATGGGAGGACTGAAGTTGGATCAAGAAACAATGTCTCATTTGTTGCAATTAGAAAGAGAGAAAAGGTTTGGTATTTAA

Protein Analysis

486

Amino Acids

55.89

Weight (kDa)

8.7

Isoelectric Point (pI)

52.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013270)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1274
AccI GTMKAC 2 cut(s) 260, 1308
AccII CGCG 1 cut(s) 764
AciI CCGC 4 cut(s) 518, 762, 1120, 1345
AclWI GGATC 4 cut(s) 866, 879, 1076, 1410
AcsI RAATTY 3 cut(s) 46, 1031, 1326
AcuI CTGAAG 3 cut(s) 237, 285, 1415
AfaI GTAC 4 cut(s) 94, 464, 884, 997
AfiI CCNNNNNNNGG 5 cut(s) 158, 283, 343, 517, 642
AgsI TTSAA 5 cut(s) 178, 302, 355, 1037, 1179
AhlI ACTAGT 1 cut(s) 755
AjnI CCWGG 1 cut(s) 705
AloI GAACNNNNNNTCC 2 cut(s) 673, 705
Alw26I GTCTC 4 cut(s) 400, 579, 1190, 1422
AlwI GGATC 4 cut(s) 866, 879, 1076, 1410
AoxI GGCC 2 cut(s) 365, 1146
ApeKI GCWGC 2 cut(s) 515, 1253
ApoI RAATTY 3 cut(s) 46, 1031, 1326
Asp700I GAANNNNTTC 1 cut(s) 306
AspS9I GGNCC 2 cut(s) 443, 703
AsuC2I CCSGG 2 cut(s) 345, 1313
AsuHPI GGTGA 2 cut(s) 408, 802
AsuII TTCGAA 1 cut(s) 1268
AsuNHI GCTAGC 1 cut(s) 1348
AvaII GGWCC 2 cut(s) 443, 703
BaeGI GKGCMC 1 cut(s) 41
BamHI GGATCC 1 cut(s) 871
BanII GRGCYC 2 cut(s) 628, 649
BbsI GAAGAC 1 cut(s) 975
BbvCI CCTCAGC 1 cut(s) 660
BbvI GCAGC 2 cut(s) 527, 1240
BccI CCATC 3 cut(s) 263, 421, 1378
BciT130I CCWGG 1 cut(s) 707
BclI TGATCA 1 cut(s) 1320
BcnI CCSGG 2 cut(s) 345, 1313
BcoDI GTCTC 4 cut(s) 400, 579, 1190, 1422
BcuI ACTAGT 1 cut(s) 755
BfaI CTAG 5 cut(s) 87, 756, 824, 836, 1349
BfmI CTRYAG 1 cut(s) 629
BfuAI ACCTGC 1 cut(s) 1274
BisI GCNGC 4 cut(s) 516, 1120, 1254, 1346
BlsI GCNGC 4 cut(s) 517, 1121, 1255, 1347
Bme1390I CCNGG 3 cut(s) 345, 707, 1313
Bme18I GGWCC 2 cut(s) 443, 703
BmgT120I GGNCC 2 cut(s) 443, 703
BmiI GGNNCC 2 cut(s) 716, 873
BmrFI CCNGG 3 cut(s) 345, 707, 1313
BmsI GCATC 2 cut(s) 184, 829
BmtI GCTAGC 1 cut(s) 1352
BoxI GACNNNNGTC 1 cut(s) 448
BpiI GAAGAC 1 cut(s) 975
BpmI CTGGAG 1 cut(s) 968
Bpu10I CCTNAGC 1 cut(s) 660
Bpu14I TTCGAA 1 cut(s) 1268
BpuEI CTTGAG 1 cut(s) 994
BpuMI CCSGG 2 cut(s) 345, 1313
BsaI GGTCTC 1 cut(s) 579
BsaJI CCNNGG 5 cut(s) 131, 322, 344, 849, 1149
BsaWI WCCGGW 1 cut(s) 678
Bsc4I CCNNNNNNNGG 5 cut(s) 158, 283, 343, 517, 642
Bse1I ACTGG 2 cut(s) 198, 951
Bse3DI GCAATG 2 cut(s) 196, 792
BseBI CCWGG 1 cut(s) 707
BseDI CCNNGG 5 cut(s) 131, 322, 344, 849, 1149
BseGI GGATG 1 cut(s) 298
BseLI CCNNNNNNNGG 5 cut(s) 158, 283, 343, 517, 642
BseMI GCAATG 2 cut(s) 196, 792
BseMII CTCAG 4 cut(s) 609, 662, 674, 1119
BseNI ACTGG 2 cut(s) 198, 951
BseRI GAGGAG 1 cut(s) 965
BseSI GKGCMC 1 cut(s) 41
BseXI GCAGC 2 cut(s) 527, 1240
BseYI CCCAGC 1 cut(s) 875
Bsh1236I CGCG 1 cut(s) 764
BshFI GGCC 2 cut(s) 367, 1148
BsiSI CCGG 3 cut(s) 344, 679, 1312
BslI CCNNNNNNNGG 5 cut(s) 158, 283, 343, 517, 642
BsmAI GTCTC 4 cut(s) 400, 579, 1190, 1422
BsnI GGCC 2 cut(s) 367, 1148
Bso31I GGTCTC 1 cut(s) 579
Bsp119I TTCGAA 1 cut(s) 1268
Bsp1286I GDGCHC 3 cut(s) 41, 628, 649
Bsp1407I TGTACA 1 cut(s) 462
Bsp143I GATC 6 cut(s) 154, 871, 1081, 1240, 1320, 1402
BspACI CCGC 4 cut(s) 518, 762, 1120, 1345
BspANI GGCC 2 cut(s) 367, 1148
BspCNI CTCAG 4 cut(s) 610, 661, 673, 1120
BspFNI CGCG 1 cut(s) 764
BspLI GGNNCC 2 cut(s) 716, 873
BspMAI CTGCAG 1 cut(s) 633
BspMI ACCTGC 1 cut(s) 1274
BspOI GCTAGC 1 cut(s) 1352
BspPI GGATC 4 cut(s) 866, 879, 1076, 1410
BspT104I TTCGAA 1 cut(s) 1268
BspTNI GGTCTC 1 cut(s) 579
BsrDI GCAATG 2 cut(s) 196, 792
BsrGI TGTACA 1 cut(s) 462
BsrI ACTGG 2 cut(s) 198, 951
BssECI CCNNGG 5 cut(s) 131, 322, 344, 849, 1149
BssMI GATC 6 cut(s) 154, 871, 1081, 1240, 1320, 1402
BssNAI GTATAC 2 cut(s) 261, 1309
BssT1I CCWWGG 3 cut(s) 322, 849, 1149
Bst1107I GTATAC 2 cut(s) 261, 1309
Bst2UI CCWGG 1 cut(s) 707
Bst4CI ACNGT 3 cut(s) 697, 995, 1090
Bst6I CTCTTC 1 cut(s) 1127
BstAPI GCANNNNNTGC 1 cut(s) 1253
BstAUI TGTACA 1 cut(s) 462
BstBI TTCGAA 1 cut(s) 1268
BstC8I GCNNGC 4 cut(s) 110, 138, 818, 1350
BstDEI CTNAG 4 cut(s) 618, 648, 660, 1128
BstF5I GGATG 1 cut(s) 298
BstFNI CGCG 1 cut(s) 764
BstKTI GATC 6 cut(s) 157, 874, 1084, 1243, 1323, 1405
BstMAI GTCTC 4 cut(s) 400, 579, 1190, 1422
BstMBI GATC 6 cut(s) 154, 871, 1081, 1240, 1320, 1402
BstMWI GCNNNNNNNGC 3 cut(s) 142, 730, 1253
BstNI CCWGG 1 cut(s) 707
BstPAI GACNNNNGTC 1 cut(s) 448
BstSCI CCNGG 3 cut(s) 343, 705, 1311
BstSFI CTRYAG 1 cut(s) 629
BstSLI GKGCMC 1 cut(s) 41
BstUI CGCG 1 cut(s) 764
BstV1I GCAGC 2 cut(s) 527, 1240
BstV2I GAAGAC 1 cut(s) 975
BstX2I RGATCY 1 cut(s) 871
BstYI RGATCY 1 cut(s) 871
BstZ17I GTATAC 2 cut(s) 261, 1309
BsuRI GGCC 2 cut(s) 367, 1148
BtsCI GGATG 1 cut(s) 298
BtsIMutI CAGTG 1 cut(s) 205
BveI ACCTGC 1 cut(s) 1274
Cac8I GCNNGC 4 cut(s) 110, 138, 818, 1350
Cfr13I GGNCC 2 cut(s) 443, 703
CseI GACGC 1 cut(s) 71
Csp6I GTAC 4 cut(s) 93, 463, 883, 996
CviAII CATG 6 cut(s) 10, 76, 583, 607, 719, 1333
CviQI GTAC 4 cut(s) 93, 463, 883, 996
DdeI CTNAG 4 cut(s) 618, 648, 660, 1128
DpnI GATC 6 cut(s) 156, 873, 1083, 1242, 1322, 1404
DpnII GATC 6 cut(s) 154, 871, 1081, 1240, 1320, 1402
Eam1104I CTCTTC 1 cut(s) 1127
EarI CTCTTC 1 cut(s) 1127
Eco130I CCWWGG 3 cut(s) 322, 849, 1149
Eco147I AGGCCT 2 cut(s) 367, 1148
Eco24I GRGCYC 2 cut(s) 628, 649
Eco31I GGTCTC 1 cut(s) 579
Eco47I GGWCC 2 cut(s) 443, 703
Eco57I CTGAAG 3 cut(s) 237, 285, 1415
EcoO109I RGGNCCY 1 cut(s) 703
EcoRII CCWGG 1 cut(s) 705
EcoT14I CCWWGG 3 cut(s) 322, 849, 1149
EcoT22I ATGCAT 1 cut(s) 1019
EcoT38I GRGCYC 2 cut(s) 628, 649
ErhI CCWWGG 3 cut(s) 322, 849, 1149
FaeI CATG 6 cut(s) 13, 79, 586, 610, 722, 1336
FalI AAGNNNNNCTT 2 cut(s) 129, 161
FatI CATG 6 cut(s) 9, 75, 582, 606, 718, 1332
FauNDI CATATG 2 cut(s) 927, 1300
FbaI TGATCA 1 cut(s) 1320
FblI GTMKAC 2 cut(s) 260, 1308
Fnu4HI GCNGC 4 cut(s) 516, 1120, 1254, 1346
FokI GGATG 1 cut(s) 305
FriOI GRGCYC 2 cut(s) 628, 649
Fsp4HI GCNGC 4 cut(s) 516, 1120, 1254, 1346
FspBI CTAG 5 cut(s) 87, 756, 824, 836, 1349
GluI GCNGC 4 cut(s) 516, 1120, 1254, 1346
GsaI CCCAGC 1 cut(s) 879
GsuI CTGGAG 1 cut(s) 968
HaeIII GGCC 2 cut(s) 367, 1148
HapII CCGG 3 cut(s) 344, 679, 1312
HgaI GACGC 1 cut(s) 71
Hin1II CATG 6 cut(s) 13, 79, 586, 610, 722, 1336
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HindIII AAGCTT 2 cut(s) 143, 814
HinfI GANTC 6 cut(s) 25, 162, 287, 766, 798, 1111
HpaII CCGG 3 cut(s) 344, 679, 1312
HphI GGTGA 2 cut(s) 408, 802
Hpy166II GTNNAC 6 cut(s) 166, 261, 463, 556, 753, 1309
Hpy188I TCNGA 6 cut(s) 161, 292, 651, 1129, 1236, 1325
Hpy188III TCNNGA 9 cut(s) 152, 175, 405, 593, 617, 917, 1045, 1074, 1406
Hpy8I GTNNAC 6 cut(s) 166, 261, 463, 556, 753, 1309
HpyAV CCTTC 3 cut(s) 131, 411, 646
HpyCH4III ACNGT 3 cut(s) 697, 995, 1090
HpyCH4IV ACGT 1 cut(s) 1305
HpyF10VI GCNNNNNNNGC 3 cut(s) 142, 730, 1253
HpyF3I CTNAG 4 cut(s) 618, 648, 660, 1128
HpySE526I ACGT 1 cut(s) 1305
Hsp92II CATG 6 cut(s) 13, 79, 586, 610, 722, 1336
Ksp22I TGATCA 1 cut(s) 1320
Kzo9I GATC 6 cut(s) 154, 871, 1081, 1240, 1320, 1402
LmnI GCTCC 1 cut(s) 952
Lsp1109I GCAGC 2 cut(s) 527, 1240
LweI GCATC 2 cut(s) 184, 829
MaeI CTAG 5 cut(s) 87, 756, 824, 836, 1349
MaeII ACGT 1 cut(s) 1305
MaeIII GTNAC 2 cut(s) 312, 602
MalI GATC 6 cut(s) 156, 873, 1083, 1242, 1322, 1404
MboI GATC 6 cut(s) 154, 871, 1081, 1240, 1320, 1402
MflI RGATCY 1 cut(s) 871
MhlI GDGCHC 3 cut(s) 41, 628, 649
MlyI GAGTC 2 cut(s) 171, 775
MmeI TCCRAC 2 cut(s) 1109, 1380
Mph1103I ATGCAT 1 cut(s) 1019
MroXI GAANNNNTTC 1 cut(s) 306
MseI TTAA 6 cut(s) 435, 738, 804, 980, 1275, 1459
MspA1I CMGCKG 1 cut(s) 518
MspI CCGG 3 cut(s) 344, 679, 1312
MspR9I CCNGG 3 cut(s) 345, 707, 1313
MvaI CCWGG 1 cut(s) 707
MvnI CGCG 1 cut(s) 764
MwoI GCNNNNNNNGC 3 cut(s) 142, 730, 1253
NciI CCSGG 2 cut(s) 345, 1313
NdeI CATATG 2 cut(s) 927, 1300
NdeII GATC 6 cut(s) 154, 871, 1081, 1240, 1320, 1402
NheI GCTAGC 1 cut(s) 1348
NlaIII CATG 6 cut(s) 13, 79, 586, 610, 722, 1336
NlaIV GGNNCC 2 cut(s) 716, 873
NmeAIII GCCGAG 1 cut(s) 112
NmuCI GTSAC 2 cut(s) 312, 602
NsiI ATGCAT 1 cut(s) 1019
NspV TTCGAA 1 cut(s) 1268
PceI AGGCCT 2 cut(s) 367, 1148
PdmI GAANNNNTTC 1 cut(s) 306
PfeI GAWTC 4 cut(s) 25, 287, 798, 1111
PkrI GCNGC 4 cut(s) 517, 1121, 1255, 1347
PleI GAGTC 2 cut(s) 170, 774
PpsI GAGTC 2 cut(s) 170, 774
PpuMI RGGWCCY 1 cut(s) 703
PshAI GACNNNNGTC 1 cut(s) 448
Psp5II RGGWCCY 1 cut(s) 703
Psp6I CCWGG 1 cut(s) 705
PspFI CCCAGC 1 cut(s) 875
PspGI CCWGG 1 cut(s) 705
PspN4I GGNNCC 2 cut(s) 716, 873
PspPI GGNCC 2 cut(s) 443, 703
PspPPI RGGWCCY 1 cut(s) 703
PstI CTGCAG 1 cut(s) 633
PsuI RGATCY 1 cut(s) 871
RsaI GTAC 4 cut(s) 94, 464, 884, 997
RsaNI GTAC 4 cut(s) 93, 463, 883, 996
SaqAI TTAA 6 cut(s) 435, 738, 804, 980, 1275, 1459
SatI GCNGC 4 cut(s) 516, 1120, 1254, 1346
Sau3AI GATC 6 cut(s) 154, 871, 1081, 1240, 1320, 1402
Sau96I GGNCC 2 cut(s) 443, 703
SchI GAGTC 2 cut(s) 171, 775
ScrFI CCNGG 3 cut(s) 345, 707, 1313
SduI GDGCHC 3 cut(s) 41, 628, 649
SfaNI GCATC 2 cut(s) 184, 829
SfcI CTRYAG 1 cut(s) 629
SfuI TTCGAA 1 cut(s) 1268
SinI GGWCC 2 cut(s) 443, 703
SmlI CTYRAG 1 cut(s) 973
SmoI CTYRAG 1 cut(s) 973
SpeI ACTAGT 1 cut(s) 755
SseBI AGGCCT 2 cut(s) 367, 1148
SsiI CCGC 4 cut(s) 518, 762, 1120, 1345
SspMI CTAG 5 cut(s) 87, 756, 824, 836, 1349
StuI AGGCCT 2 cut(s) 367, 1148
StyD4I CCNGG 3 cut(s) 343, 705, 1311
StyI CCWWGG 3 cut(s) 322, 849, 1149
TaaI ACNGT 3 cut(s) 697, 995, 1090
TaiI ACGT 1 cut(s) 1308
TaqI TCGA 6 cut(s) 397, 404, 692, 1044, 1207, 1268
TatI WGTACW 3 cut(s) 92, 462, 995
TauI GCSGC 2 cut(s) 1122, 1348
TfiI GAWTC 4 cut(s) 25, 287, 798, 1111
Tru1I TTAA 6 cut(s) 435, 738, 804, 980, 1275, 1459
Tru9I TTAA 6 cut(s) 435, 738, 804, 980, 1275, 1459
TscAI CASTG 1 cut(s) 205
TseFI GTSAC 2 cut(s) 312, 602
TseI GCWGC 2 cut(s) 515, 1253
Tsp45I GTSAC 2 cut(s) 312, 602
TspDTI ATGAA 4 cut(s) 64, 309, 790, 1022
TspRI CASTG 1 cut(s) 205
VpaK11BI GGWCC 2 cut(s) 443, 703
XapI RAATTY 3 cut(s) 46, 1031, 1326
XmiI GTMKAC 2 cut(s) 260, 1308
XmnI GAANNNNTTC 1 cut(s) 306
XspI CTAG 5 cut(s) 87, 756, 824, 836, 1349
Zsp2I ATGCAT 1 cut(s) 1019
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.