Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0013270

Physical Location & Seq

Genomic Coordinates Reverse (-)

74600219 .. 74601658

Gene Structure 1440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG471100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1440 bp

ATGGATTGCATAGTCTTTGGTATGATTCCCATTTTGTGCCCACAGAATTTTGCAAGGAATGATAGGGTGGCTTTCATGGTGCGTCCTAGTAGTACAAGGAGAAGAAGCCTGCCCAAGAACCTTCGCTATCCGCGGCAAGCAAAGCTTCCTCCTGATCTCGGAGTCAACCAATTCTTGAACAAGACAAGCAATGATGCCAGTGAGCCAGAGTACCCTGAAGCAGAAGAAGAAGAAAAGTATACTGAAGATGGCGACATTGTTTGGGAATCGGATGAAATTGAAGCTATTCAGTCACTTTTCCAAGGGAGAATACCCCAAAAGCCGGGGAGTTTGAATAGGCAGAGGCCTCTACCACTCCCACTTCCTTACAAGGTTCGACCTTCGAGACTTCCATCACCCAAGAAAAATGCTGTTAAGATTGGACCAATGTCTAAGCAAGTGTACAAGAACCCCAATGCCCTTGTTGGTTTGGCAAGGGAAATTAGAAGCCTTGCAGCGGATAAAGATGTGGGCATAGTTCTCAACAAGAGGGTTCACTTTCTGCGAAAAGGGTCTCTCTCCATGACAATTCGGGAATTGGGTCACATGGGGCTTCCTGAGAGGGCTCTGCAGACCTTCTGTTGGGCTCAGAAACAGCCACAGCTGTACCCTGATGACCGGATTTTGAGTTCGACAGTTGAGGTCTTGGCAAGGAACCATGAGCTGAAACTGCCATTTAATTTGGACAAGTTCACTAGTTCCGCGAGTCGTGGTGTGATTGAGGCAATGGTGAGAGGTTTCATTAAAGGAGGAAGCTTGCACCTAGCTTGGAAGCTAGTATCGGTAGCCAAGGATAATCAAAGGAAGCTGGATCCCAGCTTGTATGCCAAGTTAATAGTAGAGTTCGGGAAAAATCCTGATAAACATATGGTTGTAATGACCTTACTGGAGGAGCTTGGAGAAAGAGAAGACTTGAGTTTAAGCCAACAGGACTGTACTGCTATTATGAAAGTATGCATTAGGCTTGGAAAATTTGAAGTGGTCGAGAGTGTTTATGATTGGTTTAGACAATCTGGACACGATCCAACTGTCGTTATTTACACAACTTTGATTCACAGCCGCTACTCTGAGAAGAGGTACAGGGAGGCCTTGGCTGTGGTTTGGGAAATGGAGGCTTCAAATTGTCTCTTTGACTTTCCAGCTTATCGAGTTGTAATAAAACTTTTTGTTGCTCTGAATGATCTTGCAAGGGCAGCAAGATATTTTTCAAAACTTAAAGAAGCAGGTTTTACGCCAACATATGACGTATACCGGGATTTGATCAGAATTTACATGGTTTCTGGGCGGCTAGCCAAGTGTAGAGAGATTTGCAAGGAGGTAGAGATGGGAGGACTGAAGTTGGATCAAGAAACAATGTCTCATTTGTTGCAATTAGAAAGAGAGAAAAGGTTTGGTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_3

Protein Analysis

479

Amino Acids

54.9

Weight (kDa)

9.26

Isoelectric Point (pI)

45.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01860
fragaria_vesca	FvH4_5g25440
malus_domestica	MD00G1136800.v1.1 MD16G1284100.v1.1
prunus_persica	Prupe.5G010100_v2.0.a1 Prupe.5G010100_v2.0.a1 Prupe.5G010100_v2.0.a1
pyrus_communis	pycom16g26000
rosa_chinensis	RchiOBHm_Chr5g0066911
rosa_laevigata	RLG00000002634 RLG00000035892
rosa_roxburghii	Rroxscaffold_1G00014210
rosa_rugosa	Rorug05G0379600.1
rosa_samantha	Rh5BG456300 Rh5CG478400 Rh5DG471100
rosa_wichuraiana	Rw5G041080 Rw7G024910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1253
AccI	GTMKAC	2 cut(s)	239, 1287
AccII	CGCG	2 cut(s)	133, 743
AciI	CCGC	6 cut(s)	131, 133, 497, 741, 1099, 1324
AclWI	GGATC	4 cut(s)	845, 858, 1055, 1389
AcsI	RAATTY	3 cut(s)	46, 1010, 1305
AcuI	CTGAAG	3 cut(s)	237, 264, 1394
AfaI	GTAC	6 cut(s)	94, 212, 443, 647, 976, 1118
AfiI	CCNNNNNNNGG	4 cut(s)	158, 322, 496, 621
AgsI	TTSAA	6 cut(s)	178, 281, 334, 1016, 1158, 1248
AhlI	ACTAGT	1 cut(s)	734
AloI	GAACNNNNNNTCC	2 cut(s)	652, 684
Alw26I	GTCTC	4 cut(s)	379, 558, 1169, 1401
AlwI	GGATC	4 cut(s)	845, 858, 1055, 1389
AoxI	GGCC	2 cut(s)	344, 1125
ApeKI	GCWGC	2 cut(s)	494, 1232
ApoI	RAATTY	3 cut(s)	46, 1010, 1305
Asp700I	GAANNNNTTC	1 cut(s)	285
AspS9I	GGNCC	1 cut(s)	422
AsuC2I	CCSGG	2 cut(s)	324, 1292
AsuHPI	GGTGA	2 cut(s)	387, 781
AsuNHI	GCTAGC	1 cut(s)	1327
AvaII	GGWCC	1 cut(s)	422
BaeGI	GKGCMC	1 cut(s)	41
BaeI	ACNNNNGTAYC	2 cut(s)	629, 662
BamHI	GGATCC	1 cut(s)	850
BanII	GRGCYC	2 cut(s)	607, 628
BbsI	GAAGAC	1 cut(s)	954
BbvI	GCAGC	2 cut(s)	506, 1244
BccI	CCATC	3 cut(s)	242, 400, 1357
BclI	TGATCA	1 cut(s)	1299
BcnI	CCSGG	2 cut(s)	324, 1292
BcoDI	GTCTC	4 cut(s)	379, 558, 1169, 1401
BcuI	ACTAGT	1 cut(s)	734
BfaI	CTAG	5 cut(s)	87, 735, 803, 815, 1328
BfmI	CTRYAG	1 cut(s)	608
BfuAI	ACCTGC	1 cut(s)	1253
BisI	GCNGC	5 cut(s)	134, 495, 1099, 1233, 1325
BlsI	GCNGC	5 cut(s)	135, 496, 1100, 1234, 1326
Bme1390I	CCNGG	2 cut(s)	324, 1292
Bme18I	GGWCC	1 cut(s)	422
BmgT120I	GGNCC	1 cut(s)	422
BmiI	GGNNCC	2 cut(s)	695, 852
BmrFI	CCNGG	2 cut(s)	324, 1292
BmsI	GCATC	1 cut(s)	184
BmtI	GCTAGC	1 cut(s)	1331
BoxI	GACNNNNGTC	1 cut(s)	427
BpiI	GAAGAC	1 cut(s)	954
BpmI	CTGGAG	1 cut(s)	947
BpuEI	CTTGAG	1 cut(s)	973
BpuMI	CCSGG	2 cut(s)	324, 1292
BsaI	GGTCTC	1 cut(s)	558
BsaJI	CCNNGG	5 cut(s)	131, 301, 323, 828, 1128
BsaWI	WCCGGW	1 cut(s)	657
Bsc4I	CCNNNNNNNGG	4 cut(s)	158, 322, 496, 621
Bse1I	ACTGG	2 cut(s)	198, 930
Bse3DI	GCAATG	2 cut(s)	196, 771
BseDI	CCNNGG	5 cut(s)	131, 301, 323, 828, 1128
BseGI	GGATG	1 cut(s)	277
BseLI	CCNNNNNNNGG	4 cut(s)	158, 322, 496, 621
BseMI	GCAATG	2 cut(s)	196, 771
BseMII	CTCAG	3 cut(s)	588, 641, 1098
BseNI	ACTGG	2 cut(s)	198, 930
BseRI	GAGGAG	1 cut(s)	944
BseSI	GKGCMC	1 cut(s)	41
BseXI	GCAGC	2 cut(s)	506, 1244
BseYI	CCCAGC	1 cut(s)	854
Bsh1236I	CGCG	2 cut(s)	133, 743
BshFI	GGCC	2 cut(s)	346, 1127
BsiSI	CCGG	3 cut(s)	323, 658, 1291
BslI	CCNNNNNNNGG	4 cut(s)	158, 322, 496, 621
BsmAI	GTCTC	4 cut(s)	379, 558, 1169, 1401
BsnI	GGCC	2 cut(s)	346, 1127
Bso31I	GGTCTC	1 cut(s)	558
Bsp1286I	GDGCHC	3 cut(s)	41, 607, 628
Bsp1407I	TGTACA	1 cut(s)	441
Bsp143I	GATC	6 cut(s)	154, 850, 1060, 1219, 1299, 1381
BspACI	CCGC	6 cut(s)	131, 133, 497, 741, 1099, 1324
BspANI	GGCC	2 cut(s)	346, 1127
BspCNI	CTCAG	3 cut(s)	589, 640, 1099
BspFNI	CGCG	2 cut(s)	133, 743
BspLI	GGNNCC	2 cut(s)	695, 852
BspMAI	CTGCAG	1 cut(s)	612
BspMI	ACCTGC	1 cut(s)	1253
BspOI	GCTAGC	1 cut(s)	1331
BspPI	GGATC	4 cut(s)	845, 858, 1055, 1389
BspTNI	GGTCTC	1 cut(s)	558
BsrDI	GCAATG	2 cut(s)	196, 771
BsrGI	TGTACA	1 cut(s)	441
BsrI	ACTGG	2 cut(s)	198, 930
BssECI	CCNNGG	5 cut(s)	131, 301, 323, 828, 1128
BssMI	GATC	6 cut(s)	154, 850, 1060, 1219, 1299, 1381
BssNAI	GTATAC	2 cut(s)	240, 1288
BssT1I	CCWWGG	3 cut(s)	301, 828, 1128
Bst1107I	GTATAC	2 cut(s)	240, 1288
Bst4CI	ACNGT	3 cut(s)	676, 974, 1069
Bst6I	CTCTTC	1 cut(s)	1106
BstAUI	TGTACA	1 cut(s)	441
BstC8I	GCNNGC	4 cut(s)	110, 138, 797, 1329
BstDEI	CTNAG	4 cut(s)	432, 597, 627, 1107
BstDSI	CCRYGG	1 cut(s)	131
BstF5I	GGATG	1 cut(s)	277
BstFNI	CGCG	2 cut(s)	133, 743
BstKTI	GATC	6 cut(s)	157, 853, 1063, 1222, 1302, 1384
BstMAI	GTCTC	4 cut(s)	379, 558, 1169, 1401
BstMBI	GATC	6 cut(s)	154, 850, 1060, 1219, 1299, 1381
BstMWI	GCNNNNNNNGC	3 cut(s)	142, 709, 1232
BstPAI	GACNNNNGTC	1 cut(s)	427
BstSCI	CCNGG	2 cut(s)	322, 1290
BstSFI	CTRYAG	1 cut(s)	608
BstSLI	GKGCMC	1 cut(s)	41
BstUI	CGCG	2 cut(s)	133, 743
BstV1I	GCAGC	2 cut(s)	506, 1244
BstV2I	GAAGAC	1 cut(s)	954
BstX2I	RGATCY	1 cut(s)	850
BstYI	RGATCY	1 cut(s)	850
BstZ17I	GTATAC	2 cut(s)	240, 1288
BsuRI	GGCC	2 cut(s)	346, 1127
BtgI	CCRYGG	1 cut(s)	131
BtsCI	GGATG	1 cut(s)	277
BtsIMutI	CAGTG	1 cut(s)	205
BveI	ACCTGC	1 cut(s)	1253
Cac8I	GCNNGC	4 cut(s)	110, 138, 797, 1329
Cfr13I	GGNCC	1 cut(s)	422
Cfr42I	CCGCGG	1 cut(s)	134
CseI	GACGC	1 cut(s)	71
Csp6I	GTAC	6 cut(s)	93, 211, 442, 646, 975, 1117
CviAII	CATG	5 cut(s)	76, 562, 586, 698, 1312
CviQI	GTAC	6 cut(s)	93, 211, 442, 646, 975, 1117
DdeI	CTNAG	4 cut(s)	432, 597, 627, 1107
DpnI	GATC	6 cut(s)	156, 852, 1062, 1221, 1301, 1383
DpnII	GATC	6 cut(s)	154, 850, 1060, 1219, 1299, 1381
Eam1104I	CTCTTC	1 cut(s)	1106
EarI	CTCTTC	1 cut(s)	1106
Eco130I	CCWWGG	3 cut(s)	301, 828, 1128
Eco147I	AGGCCT	2 cut(s)	346, 1127
Eco24I	GRGCYC	2 cut(s)	607, 628
Eco31I	GGTCTC	1 cut(s)	558
Eco47I	GGWCC	1 cut(s)	422
Eco57I	CTGAAG	3 cut(s)	237, 264, 1394
EcoT14I	CCWWGG	3 cut(s)	301, 828, 1128
EcoT22I	ATGCAT	1 cut(s)	998
EcoT38I	GRGCYC	2 cut(s)	607, 628
ErhI	CCWWGG	3 cut(s)	301, 828, 1128
FaeI	CATG	5 cut(s)	79, 565, 589, 701, 1315
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FatI	CATG	5 cut(s)	75, 561, 585, 697, 1311
FauNDI	CATATG	2 cut(s)	906, 1279
FbaI	TGATCA	1 cut(s)	1299
FblI	GTMKAC	2 cut(s)	239, 1287
Fnu4HI	GCNGC	5 cut(s)	134, 495, 1099, 1233, 1325
FokI	GGATG	1 cut(s)	284
FriOI	GRGCYC	2 cut(s)	607, 628
Fsp4HI	GCNGC	5 cut(s)	134, 495, 1099, 1233, 1325
FspBI	CTAG	5 cut(s)	87, 735, 803, 815, 1328
GluI	GCNGC	5 cut(s)	134, 495, 1099, 1233, 1325
GsaI	CCCAGC	1 cut(s)	858
GsuI	CTGGAG	1 cut(s)	947
HaeIII	GGCC	2 cut(s)	346, 1127
HapII	CCGG	3 cut(s)	323, 658, 1291
HgaI	GACGC	1 cut(s)	71
Hin1II	CATG	5 cut(s)	79, 565, 589, 701, 1315
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HindIII	AAGCTT	2 cut(s)	143, 793
HinfI	GANTC	5 cut(s)	25, 162, 266, 745, 1090
HpaII	CCGG	3 cut(s)	323, 658, 1291
HphI	GGTGA	2 cut(s)	387, 781
Hpy166II	GTNNAC	6 cut(s)	166, 240, 442, 535, 732, 1288
Hpy188I	TCNGA	6 cut(s)	161, 271, 630, 1108, 1215, 1304
Hpy8I	GTNNAC	6 cut(s)	166, 240, 442, 535, 732, 1288
HpyAV	CCTTC	3 cut(s)	131, 390, 625
HpyCH4III	ACNGT	3 cut(s)	676, 974, 1069
HpyCH4IV	ACGT	1 cut(s)	1284
HpyCH4V	TGCA	9 cut(s)	9, 53, 494, 610, 799, 996, 1226, 1350, 1408
HpyF10VI	GCNNNNNNNGC	3 cut(s)	142, 709, 1232
HpyF3I	CTNAG	4 cut(s)	432, 597, 627, 1107
HpySE526I	ACGT	1 cut(s)	1284
Hsp92II	CATG	5 cut(s)	79, 565, 589, 701, 1315
Ksp22I	TGATCA	1 cut(s)	1299
KspI	CCGCGG	1 cut(s)	134
Kzo9I	GATC	6 cut(s)	154, 850, 1060, 1219, 1299, 1381
LmnI	GCTCC	1 cut(s)	931
Lsp1109I	GCAGC	2 cut(s)	506, 1244
LweI	GCATC	1 cut(s)	184
MaeI	CTAG	5 cut(s)	87, 735, 803, 815, 1328
MaeII	ACGT	1 cut(s)	1284
MaeIII	GTNAC	2 cut(s)	291, 581
MalI	GATC	6 cut(s)	156, 852, 1062, 1221, 1301, 1383
MboI	GATC	6 cut(s)	154, 850, 1060, 1219, 1299, 1381
MboII	GAAGA	7 cut(s)	114, 236, 239, 242, 257, 959, 1123
MflI	RGATCY	1 cut(s)	850
MhlI	GDGCHC	3 cut(s)	41, 607, 628
MlyI	GAGTC	2 cut(s)	171, 754
MmeI	TCCRAC	2 cut(s)	1088, 1359
Mph1103I	ATGCAT	1 cut(s)	998
MroXI	GAANNNNTTC	1 cut(s)	285
MseI	TTAA	7 cut(s)	414, 717, 783, 872, 959, 1254, 1438
MspA1I	CMGCKG	3 cut(s)	133, 497, 643
MspI	CCGG	3 cut(s)	323, 658, 1291
MspR9I	CCNGG	2 cut(s)	324, 1292
MvnI	CGCG	2 cut(s)	133, 743
MwoI	GCNNNNNNNGC	3 cut(s)	142, 709, 1232
NciI	CCSGG	2 cut(s)	324, 1292
NdeI	CATATG	2 cut(s)	906, 1279
NdeII	GATC	6 cut(s)	154, 850, 1060, 1219, 1299, 1381
NheI	GCTAGC	1 cut(s)	1327
NlaIII	CATG	5 cut(s)	79, 565, 589, 701, 1315
NlaIV	GGNNCC	2 cut(s)	695, 852
NmuCI	GTSAC	2 cut(s)	291, 581
NsiI	ATGCAT	1 cut(s)	998
PceI	AGGCCT	2 cut(s)	346, 1127
PdmI	GAANNNNTTC	1 cut(s)	285
PfeI	GAWTC	3 cut(s)	25, 266, 1090
PkrI	GCNGC	5 cut(s)	135, 496, 1100, 1234, 1326
PleI	GAGTC	2 cut(s)	170, 753
PpsI	GAGTC	2 cut(s)	170, 753
PshAI	GACNNNNGTC	1 cut(s)	427
PspFI	CCCAGC	1 cut(s)	854
PspN4I	GGNNCC	2 cut(s)	695, 852
PspPI	GGNCC	1 cut(s)	422
PstI	CTGCAG	1 cut(s)	612
PsuI	RGATCY	1 cut(s)	850
PvuII	CAGCTG	1 cut(s)	643
RsaI	GTAC	6 cut(s)	94, 212, 443, 647, 976, 1118
RsaNI	GTAC	6 cut(s)	93, 211, 442, 646, 975, 1117
SacII	CCGCGG	1 cut(s)	134
SaqAI	TTAA	7 cut(s)	414, 717, 783, 872, 959, 1254, 1438
SatI	GCNGC	5 cut(s)	134, 495, 1099, 1233, 1325
Sau3AI	GATC	6 cut(s)	154, 850, 1060, 1219, 1299, 1381
Sau96I	GGNCC	1 cut(s)	422
SchI	GAGTC	2 cut(s)	171, 754
ScrFI	CCNGG	2 cut(s)	324, 1292
SduI	GDGCHC	3 cut(s)	41, 607, 628
SfaNI	GCATC	1 cut(s)	184
SfcI	CTRYAG	1 cut(s)	608
Sfr303I	CCGCGG	1 cut(s)	134
SgrBI	CCGCGG	1 cut(s)	134
SinI	GGWCC	1 cut(s)	422
SmlI	CTYRAG	1 cut(s)	952
SmoI	CTYRAG	1 cut(s)	952
SpeI	ACTAGT	1 cut(s)	734
SseBI	AGGCCT	2 cut(s)	346, 1127
SsiI	CCGC	6 cut(s)	131, 133, 497, 741, 1099, 1324
SspMI	CTAG	5 cut(s)	87, 735, 803, 815, 1328
StuI	AGGCCT	2 cut(s)	346, 1127
StyD4I	CCNGG	2 cut(s)	322, 1290
StyI	CCWWGG	3 cut(s)	301, 828, 1128
TaaI	ACNGT	3 cut(s)	676, 974, 1069
TaiI	ACGT	1 cut(s)	1287
TaqI	TCGA	5 cut(s)	376, 383, 671, 1023, 1186
TatI	WGTACW	3 cut(s)	92, 441, 974
TauI	GCSGC	3 cut(s)	136, 1101, 1327
TfiI	GAWTC	3 cut(s)	25, 266, 1090
Tru1I	TTAA	7 cut(s)	414, 717, 783, 872, 959, 1254, 1438
Tru9I	TTAA	7 cut(s)	414, 717, 783, 872, 959, 1254, 1438
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	2 cut(s)	291, 581
TseI	GCWGC	2 cut(s)	494, 1232
Tsp45I	GTSAC	2 cut(s)	291, 581
TspDTI	ATGAA	4 cut(s)	64, 288, 769, 1001
TspRI	CASTG	1 cut(s)	205
VpaK11BI	GGWCC	1 cut(s)	422
XapI	RAATTY	3 cut(s)	46, 1010, 1305
XmiI	GTMKAC	2 cut(s)	239, 1287
XmnI	GAANNNNTTC	1 cut(s)	285
XspI	CTAG	5 cut(s)	87, 735, 803, 815, 1328
Zsp2I	ATGCAT	1 cut(s)	998

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.