MD00G1136800.v1.1

Pentatricopeptide repeat domain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Forward (+)
29678437 .. 29679909
1473 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1136800.v1.1.491

Sequence Viewer

Length: 1473 bp
ATGGGTCATAGTTTTCATTCAATGGATTCTCTATTGTCCGCTACAATTCCCTTTTTGTTCCCTCAAAGTTTTGCAAGAAATGGCCGCCGGCTGGTTACAGTGGCGCAGCGTTCTAACACTAGGACACGACTTCCCAAGAACCTTCGCTACCCGCGGCGCACCAAGCTTCCTCCGGACCTCCTTGGAATCGACCCCTTCTTGAACAACACAAGCACTTCCACAGAACCTTCATCTCGAACAGAAGAATTCGAGGCAGCAGCAGCAGATGAAGAAGGTAAAGAAGATGGCGTCATTGCGTGGGAATCAGATGAGATCGAAGCTATTTCATCCCTTTTCCAAGGGAGAATACCCCAGAAGCCCGGAATGCTGAATCGACAGAGGCCTTTCCCGCTCCCACTTCCTCACAAGCTTCGACCTTTGGGACTTCCCACGCCCAAGAAACATGTTAAGGTGCCGCCCGTATGCGACCAAGTCTACAAAAACCCTAATGCGCTTGTTGGGTTAGCAAGGGAAATCAGAAGCCTTGGAGCAGACGAAGACGCGGGACGAGTTCTGAACAATTGGATTCAGTGTCTTAGAAAAGGCTCTCTTTCCATGACAATTAGGGAATTGGGTCACATGGGTCTCCCTGAGAGAGCTCTGCAGACCTTCTCTTGGGCTCAGAAACAGCCTCAACTCTTCCCCGATGACCGCCTTTTGGCTTCAACGGTTGAGGTCCTGGCAAGGCACCACGAGCTTAAACTGCCTTTCAATTTGGACAAGTTTGCTAGTTTGGCAAGTCGTGGAGTGATTGAGGCAATGGCGAGAGGGTTCATTAAAGGAGGAAGCTTGCATCTAGCTTGGAAGCTTGTATTGGTAGCTAAGAATAGTGGAAGAAAGTTGGATCCGGGCTTATATGCTAAGCTGATACTCAAGCTTGGGAAGAACCCCGATAAGCACAGGCTTGTAATGACCTTACTCGACGAGCTTGGAGAAAGGGAAGACATGAATTTAAGTCAGCAGGATTGTACTGCTATTATGAAAGTGTGCATTAGGCTTGGGAAATTTGAAGTTGTGGAGAGTGTTTATGACTGGTTTAGACAATCTGGGCATGATCCAAGTGTCGTTATGTACACAACTCTGATTCATAGTCGCTATTCGCAGAAGAAATACAGGGAGGCTCTAGCTTTGGTTTGGGAAATGGAGGCTTCAAATTGTCTCTTTGATTTTCCAGCTTATCGTGTGGCAGTAAAGCTTTTTGTTGCCCTGAATGATCATCCAAGGGCAGTAAGATATTTCTCAAAGCTTAAGGAAGCAGGTTTCTCTCCAACATATGATGTATATTTAGACATGATTAAAATTTACGTGGTTTCTGGGAGGCTGGCTAAGTGCAGGGATGTATTCAAGGAGGTAGAAATAGCAGGATTGAAGTTAGATAAAGAAACAATGTCTCAGTTGTTGCAATTAGAAAGAGAAAAAAGGTTAGGTTTTTGA

Protein Analysis

491

Amino Acids

55.62

Weight (kDa)

9.47

Isoelectric Point (pI)

40.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013270)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1286
AccB1I GGYRCC 2 cut(s) 451, 726
AccBSI CCGCTC 1 cut(s) 391
AccI GTMKAC 1 cut(s) 474
AccII CGCG 2 cut(s) 154, 542
AccIII TCCGGA 1 cut(s) 172
AciI CCGC 8 cut(s) 39, 85, 152, 154, 389, 455, 542, 691
AclWI GGATC 3 cut(s) 878, 891, 1088
AcoI YGGCCR 1 cut(s) 82
AcsI RAATTY 4 cut(s) 245, 988, 1043, 1338
AcyI GRCGYC 1 cut(s) 288
AfaI GTAC 2 cut(s) 1009, 1112
AfiI CCNNNNNNNGG 3 cut(s) 91, 654, 697
AflII CTTAAG 1 cut(s) 1286
AflIII ACRYGT 1 cut(s) 442
AgsI TTSAA 8 cut(s) 21, 202, 705, 751, 1049, 1191, 1384, 1408
AjnI CCWGG 1 cut(s) 717
AjuI GAANNNNNNNTTGG 2 cut(s) 836, 868
Alw21I GWGCWC 1 cut(s) 640
Alw26I GTCTC 3 cut(s) 629, 1202, 1434
AlwI GGATC 3 cut(s) 878, 891, 1088
Aor13HI TCCGGA 1 cut(s) 172
AoxI GGCC 2 cut(s) 82, 380
ApeKI GCWGC 4 cut(s) 106, 254, 257, 260
ApoI RAATTY 4 cut(s) 245, 988, 1043, 1338
AspLEI GCGC 3 cut(s) 106, 159, 493
AspS9I GGNCC 2 cut(s) 175, 715
AsuC2I CCSGG 2 cut(s) 360, 888
AvaII GGWCC 2 cut(s) 175, 715
BamHI GGATCC 1 cut(s) 883
BanI GGYRCC 2 cut(s) 451, 726
BanII GRGCYC 2 cut(s) 640, 661
BauI CACGAG 1 cut(s) 731
BbsI GAAGAC 2 cut(s) 543, 987
Bbv12I GWGCWC 1 cut(s) 640
BbvI GCAGC 4 cut(s) 118, 266, 269, 272
BccI CCATC 1 cut(s) 278
BciT130I CCWGG 1 cut(s) 719
BclI TGATCA 1 cut(s) 1252
BcnI CCSGG 2 cut(s) 360, 888
BcoDI GTCTC 3 cut(s) 629, 1202, 1434
BfaI CTAG 4 cut(s) 120, 768, 836, 1163
BfmI CTRYAG 1 cut(s) 641
BfrI CTTAAG 1 cut(s) 1286
BfuAI ACCTGC 1 cut(s) 1286
BisI GCNGC 7 cut(s) 85, 107, 155, 255, 258, 261, 455
BlpI GCTNAGC 1 cut(s) 900
BlsI GCNGC 7 cut(s) 86, 108, 156, 256, 259, 262, 456
Bme1390I CCNGG 3 cut(s) 360, 719, 888
Bme18I GGWCC 2 cut(s) 175, 715
BmgT120I GGNCC 2 cut(s) 175, 715
BmiI GGNNCC 3 cut(s) 453, 728, 885
BmrFI CCNGG 3 cut(s) 360, 719, 888
BmsI GCATC 1 cut(s) 841
BpiI GAAGAC 2 cut(s) 543, 987
Bpu1102I GCTNAGC 1 cut(s) 900
BpuEI CTTGAG 1 cut(s) 896
BpuMI CCSGG 2 cut(s) 360, 888
BsaAI YACGTR 1 cut(s) 1345
BsaHI GRCGYC 1 cut(s) 288
BsaI GGTCTC 1 cut(s) 629
BsaJI CCNNGG 5 cut(s) 152, 181, 337, 523, 1259
BsaWI WCCGGW 1 cut(s) 172
Bsc4I CCNNNNNNNGG 3 cut(s) 91, 654, 697
Bse118I RCCGGY 1 cut(s) 87
Bse1I ACTGG 1 cut(s) 1076
Bse3DI GCAATG 2 cut(s) 291, 804
BseAI TCCGGA 1 cut(s) 172
BseBI CCWGG 1 cut(s) 719
BseDI CCNNGG 5 cut(s) 152, 181, 337, 523, 1259
BseGI GGATG 3 cut(s) 326, 1255, 1381
BseLI CCNNNNNNNGG 3 cut(s) 91, 654, 697
BseMI GCAATG 2 cut(s) 291, 804
BseMII CTCAG 3 cut(s) 621, 674, 1445
BseNI ACTGG 1 cut(s) 1076
BseXI GCAGC 4 cut(s) 118, 266, 269, 272
BsgI GTGCAG 1 cut(s) 1390
Bsh1236I CGCG 2 cut(s) 154, 542
BshFI GGCC 2 cut(s) 84, 382
BshNI GGYRCC 2 cut(s) 451, 726
BsiHKAI GWGCWC 1 cut(s) 640
BsiSI CCGG 4 cut(s) 88, 173, 360, 887
BslFI GGGAC 2 cut(s) 435, 558
BslI CCNNNNNNNGG 3 cut(s) 91, 654, 697
BsmAI GTCTC 3 cut(s) 629, 1202, 1434
BsmFI GGGAC 2 cut(s) 435, 558
BsmI GAATGC 1 cut(s) 369
BsnI GGCC 2 cut(s) 84, 382
Bso31I GGTCTC 1 cut(s) 629
Bsp1286I GDGCHC 2 cut(s) 640, 661
Bsp13I TCCGGA 1 cut(s) 172
Bsp1407I TGTACA 1 cut(s) 1110
Bsp143I GATC 4 cut(s) 312, 883, 1093, 1252
Bsp1720I GCTNAGC 1 cut(s) 900
BspACI CCGC 8 cut(s) 39, 85, 152, 154, 389, 455, 542, 691
BspANI GGCC 2 cut(s) 84, 382
BspCNI CTCAG 3 cut(s) 622, 673, 1444
BspEI TCCGGA 1 cut(s) 172
BspFNI CGCG 2 cut(s) 154, 542
BspLI GGNNCC 3 cut(s) 453, 728, 885
BspMAI CTGCAG 1 cut(s) 645
BspMI ACCTGC 1 cut(s) 1286
BspPI GGATC 3 cut(s) 878, 891, 1088
BspT107I GGYRCC 2 cut(s) 451, 726
BspTI CTTAAG 1 cut(s) 1286
BspTNI GGTCTC 1 cut(s) 629
BsrBI CCGCTC 1 cut(s) 391
BsrDI GCAATG 2 cut(s) 291, 804
BsrFI RCCGGY 1 cut(s) 87
BsrGI TGTACA 1 cut(s) 1110
BsrI ACTGG 1 cut(s) 1076
BssAI RCCGGY 1 cut(s) 87
BssECI CCNNGG 5 cut(s) 152, 181, 337, 523, 1259
BssMI GATC 4 cut(s) 312, 883, 1093, 1252
BssNI GRCGYC 1 cut(s) 288
BssSI CACGAG 1 cut(s) 731
BssT1I CCWWGG 4 cut(s) 181, 337, 523, 1259
Bst2BI CACGAG 1 cut(s) 731
Bst2UI CCWGG 1 cut(s) 719
Bst4CI ACNGT 2 cut(s) 100, 709
Bst6I CTCTTC 1 cut(s) 683
BstACI GRCGYC 1 cut(s) 288
BstAFI CTTAAG 1 cut(s) 1286
BstAUI TGTACA 1 cut(s) 1110
BstBAI YACGTR 1 cut(s) 1345
BstC8I GCNNGC 3 cut(s) 89, 830, 1362
BstDEI CTNAG 7 cut(s) 575, 630, 660, 861, 900, 1365, 1431
BstDSI CCRYGG 1 cut(s) 152
BstF5I GGATG 3 cut(s) 326, 1255, 1381
BstFNI CGCG 2 cut(s) 154, 542
BstHHI GCGC 3 cut(s) 106, 159, 493
BstKTI GATC 4 cut(s) 315, 886, 1096, 1255
BstMAI GTCTC 3 cut(s) 629, 1202, 1434
BstMBI GATC 4 cut(s) 312, 883, 1093, 1252
BstMWI GCNNNNNNNGC 7 cut(s) 163, 260, 364, 388, 733, 742, 773
BstNI CCWGG 1 cut(s) 719
BstNSI RCATGY 1 cut(s) 446
BstSCI CCNGG 3 cut(s) 358, 717, 886
BstSFI CTRYAG 1 cut(s) 641
BstUI CGCG 2 cut(s) 154, 542
BstV1I GCAGC 4 cut(s) 118, 266, 269, 272
BstV2I GAAGAC 2 cut(s) 543, 987
BstX2I RGATCY 1 cut(s) 883
BstYI RGATCY 1 cut(s) 883
BsuRI GGCC 2 cut(s) 84, 382
BtgI CCRYGG 1 cut(s) 152
BtsCI GGATG 3 cut(s) 326, 1255, 1381
BtsIMutI CAGTG 2 cut(s) 105, 575
BveI ACCTGC 1 cut(s) 1286
Cac8I GCNNGC 3 cut(s) 89, 830, 1362
CfoI GCGC 3 cut(s) 106, 159, 493
Cfr10I RCCGGY 1 cut(s) 87
Cfr13I GGNCC 2 cut(s) 175, 715
Cfr42I CCGCGG 1 cut(s) 155
CseI GACGC 2 cut(s) 277, 548
Csp6I GTAC 2 cut(s) 1008, 1111
CviAII CATG 6 cut(s) 443, 595, 619, 985, 1091, 1330
CviQI GTAC 2 cut(s) 1008, 1111
DdeI CTNAG 7 cut(s) 575, 630, 660, 861, 900, 1365, 1431
DpnI GATC 4 cut(s) 314, 885, 1095, 1254
DpnII GATC 4 cut(s) 312, 883, 1093, 1252
EaeI YGGCCR 1 cut(s) 82
Eam1104I CTCTTC 1 cut(s) 683
EarI CTCTTC 1 cut(s) 683
Ecl136II GAGCTC 1 cut(s) 638
Eco130I CCWWGG 4 cut(s) 181, 337, 523, 1259
Eco147I AGGCCT 1 cut(s) 382
Eco24I GRGCYC 2 cut(s) 640, 661
Eco31I GGTCTC 1 cut(s) 629
Eco47I GGWCC 2 cut(s) 175, 715
Eco53kI GAGCTC 1 cut(s) 638
EcoICRI GAGCTC 1 cut(s) 638
EcoO109I RGGNCCY 1 cut(s) 715
EcoRI GAATTC 1 cut(s) 245
EcoRII CCWGG 1 cut(s) 717
EcoT14I CCWWGG 4 cut(s) 181, 337, 523, 1259
EcoT38I GRGCYC 2 cut(s) 640, 661
ErhI CCWWGG 4 cut(s) 181, 337, 523, 1259
FaeI CATG 6 cut(s) 446, 598, 622, 988, 1094, 1333
FalI AAGNNNNNCTT 2 cut(s) 573, 605
FaqI GGGAC 2 cut(s) 435, 558
FatI CATG 6 cut(s) 442, 594, 618, 984, 1090, 1329
FauI CCCGC 3 cut(s) 159, 396, 535
FauNDI CATATG 1 cut(s) 1312
FbaI TGATCA 1 cut(s) 1252
FblI GTMKAC 1 cut(s) 474
Fnu4HI GCNGC 7 cut(s) 85, 107, 155, 255, 258, 261, 455
FokI GGATG 3 cut(s) 313, 1242, 1388
FriOI GRGCYC 2 cut(s) 640, 661
Fsp4HI GCNGC 7 cut(s) 85, 107, 155, 255, 258, 261, 455
FspBI CTAG 4 cut(s) 120, 768, 836, 1163
GlaI GCGC 3 cut(s) 105, 158, 492
GluI GCNGC 7 cut(s) 85, 107, 155, 255, 258, 261, 455
HaeIII GGCC 2 cut(s) 84, 382
HapII CCGG 4 cut(s) 88, 173, 360, 887
HgaI GACGC 2 cut(s) 277, 548
HhaI GCGC 3 cut(s) 106, 159, 493
Hin1I GRCGYC 1 cut(s) 288
Hin1II CATG 6 cut(s) 446, 598, 622, 988, 1094, 1333
Hin6I GCGC 3 cut(s) 104, 157, 491
HinP1I GCGC 3 cut(s) 104, 157, 491
HindIII AAGCTT 7 cut(s) 164, 407, 826, 845, 914, 1232, 1283
HinfI GANTC 6 cut(s) 26, 186, 302, 370, 565, 1123
HpaII CCGG 4 cut(s) 88, 173, 360, 887
Hpy166II GTNNAC 2 cut(s) 475, 1113
Hpy188I TCNGA 5 cut(s) 307, 518, 555, 663, 1122
Hpy188III TCNNGA 3 cut(s) 173, 199, 234
Hpy8I GTNNAC 2 cut(s) 475, 1113
Hpy99I CGWCG 1 cut(s) 965
HpyAV CCTTC 5 cut(s) 152, 205, 237, 266, 658
HpyCH4III ACNGT 2 cut(s) 100, 709
HpyCH4IV ACGT 1 cut(s) 1344
HpyCH4V TGCA 6 cut(s) 74, 643, 832, 1029, 1371, 1441
HpyF10VI GCNNNNNNNGC 7 cut(s) 163, 260, 364, 388, 733, 742, 773
HpyF3I CTNAG 7 cut(s) 575, 630, 660, 861, 900, 1365, 1431
HpySE526I ACGT 1 cut(s) 1344
Hsp92I GRCGYC 1 cut(s) 288
Hsp92II CATG 6 cut(s) 446, 598, 622, 988, 1094, 1333
HspAI GCGC 3 cut(s) 104, 157, 491
Kpn2I TCCGGA 1 cut(s) 172
KroI GCCGGC 1 cut(s) 87
KroNI GCCGGC 1 cut(s) 89
Ksp22I TGATCA 1 cut(s) 1252
KspI CCGCGG 1 cut(s) 155
Kzo9I GATC 4 cut(s) 312, 883, 1093, 1252
LmnI GCTCC 2 cut(s) 396, 527
Lsp1109I GCAGC 4 cut(s) 118, 266, 269, 272
LweI GCATC 1 cut(s) 841
MaeI CTAG 4 cut(s) 120, 768, 836, 1163
MaeII ACGT 1 cut(s) 1344
MaeIII GTNAC 2 cut(s) 94, 614
MalI GATC 4 cut(s) 314, 885, 1095, 1254
MbiI CCGCTC 1 cut(s) 391
MboI GATC 4 cut(s) 312, 883, 1093, 1252
MboII GAAGA 9 cut(s) 254, 281, 293, 548, 670, 885, 934, 992, 1156
MfeI CAATTG 1 cut(s) 559
MflI RGATCY 1 cut(s) 883
MhlI GDGCHC 2 cut(s) 640, 661
MmeI TCCRAC 2 cut(s) 861, 1331
MroI TCCGGA 1 cut(s) 172
MroNI GCCGGC 1 cut(s) 87
MseI TTAA 6 cut(s) 447, 738, 816, 992, 1287, 1335
MspA1I CMGCKG 1 cut(s) 154
MspCI CTTAAG 1 cut(s) 1286
MspI CCGG 4 cut(s) 88, 173, 360, 887
MspR9I CCNGG 3 cut(s) 360, 719, 888
MunI CAATTG 1 cut(s) 559
Mva1269I GAATGC 1 cut(s) 369
MvaI CCWGG 1 cut(s) 719
MvnI CGCG 2 cut(s) 154, 542
MwoI GCNNNNNNNGC 7 cut(s) 163, 260, 364, 388, 733, 742, 773
NaeI GCCGGC 1 cut(s) 89
NciI CCSGG 2 cut(s) 360, 888
NdeI CATATG 1 cut(s) 1312
NdeII GATC 4 cut(s) 312, 883, 1093, 1252
NgoMIV GCCGGC 1 cut(s) 87
NlaIII CATG 6 cut(s) 446, 598, 622, 988, 1094, 1333
NlaIV GGNNCC 3 cut(s) 453, 728, 885
NmuCI GTSAC 1 cut(s) 614
NspI RCATGY 1 cut(s) 446
PceI AGGCCT 1 cut(s) 382
PciI ACATGT 1 cut(s) 442
PctI GAATGC 1 cut(s) 369
PdiI GCCGGC 1 cut(s) 89
PfeI GAWTC 6 cut(s) 26, 186, 302, 370, 565, 1123
PflFI GACNNNGTC 1 cut(s) 470
PkrI GCNGC 7 cut(s) 86, 108, 156, 256, 259, 262, 456
Ppu21I YACGTR 1 cut(s) 1345
PpuMI RGGWCCY 1 cut(s) 715
PscI ACATGT 1 cut(s) 442
Psp124BI GAGCTC 1 cut(s) 640
Psp5II RGGWCCY 1 cut(s) 715
Psp6I CCWGG 1 cut(s) 717
PspGI CCWGG 1 cut(s) 717
PspN4I GGNNCC 3 cut(s) 453, 728, 885
PspPI GGNCC 2 cut(s) 175, 715
PspPPI RGGWCCY 1 cut(s) 715
PsrI GAACNNNNNNTAC 2 cut(s) 131, 163
PstI CTGCAG 1 cut(s) 645
PsuI RGATCY 1 cut(s) 883
PsyI GACNNNGTC 1 cut(s) 470
RsaI GTAC 2 cut(s) 1009, 1112
RsaNI GTAC 2 cut(s) 1008, 1111
SacI GAGCTC 1 cut(s) 640
SacII CCGCGG 1 cut(s) 155
SaqAI TTAA 6 cut(s) 447, 738, 816, 992, 1287, 1335
SatI GCNGC 7 cut(s) 85, 107, 155, 255, 258, 261, 455
Sau3AI GATC 4 cut(s) 312, 883, 1093, 1252
Sau96I GGNCC 2 cut(s) 175, 715
ScrFI CCNGG 3 cut(s) 360, 719, 888
SduI GDGCHC 2 cut(s) 640, 661
SfaNI GCATC 1 cut(s) 841
SfcI CTRYAG 1 cut(s) 641
Sfr303I CCGCGG 1 cut(s) 155
SgrBI CCGCGG 1 cut(s) 155
SinI GGWCC 2 cut(s) 175, 715
SmlI CTYRAG 2 cut(s) 911, 1286
SmoI CTYRAG 2 cut(s) 911, 1286
SseBI AGGCCT 1 cut(s) 382
SsiI CCGC 8 cut(s) 39, 85, 152, 154, 389, 455, 542, 691
SspMI CTAG 4 cut(s) 120, 768, 836, 1163
SstI GAGCTC 1 cut(s) 640
StuI AGGCCT 1 cut(s) 382
StyD4I CCNGG 3 cut(s) 358, 717, 886
StyI CCWWGG 4 cut(s) 181, 337, 523, 1259
TaaI ACNGT 2 cut(s) 100, 709
TaiI ACGT 1 cut(s) 1347
TaqI TCGA 7 cut(s) 189, 235, 249, 315, 373, 412, 960
TatI WGTACW 2 cut(s) 1007, 1110
TauI GCSGC 3 cut(s) 87, 157, 457
TfiI GAWTC 6 cut(s) 26, 186, 302, 370, 565, 1123
Tru1I TTAA 6 cut(s) 447, 738, 816, 992, 1287, 1335
Tru9I TTAA 6 cut(s) 447, 738, 816, 992, 1287, 1335
TscAI CASTG 2 cut(s) 105, 575
TseFI GTSAC 1 cut(s) 614
TseI GCWGC 4 cut(s) 106, 254, 257, 260
Tsp45I GTSAC 1 cut(s) 614
TspDTI ATGAA 8 cut(s) 5, 219, 282, 315, 802, 1001, 1034, 1115
TspRI CASTG 2 cut(s) 105, 575
Tth111I GACNNNGTC 1 cut(s) 470
Vha464I CTTAAG 1 cut(s) 1286
VpaK11BI GGWCC 2 cut(s) 175, 715
XapI RAATTY 4 cut(s) 245, 988, 1043, 1338
XceI RCATGY 1 cut(s) 446
XmiI GTMKAC 1 cut(s) 474
XspI CTAG 4 cut(s) 120, 768, 836, 1163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.