Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013270

Physical Location & Seq

Genomic Coordinates Reverse (-)

72962129 .. 72964153

Gene Structure 2025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34266

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

ATGGATTGCATGGTCTTTGGTATGATTCCCATTTTGTGCCCGCAGAATTTTGCAAGGAATGATAGGGTGGCTTTCATGGTGCGTCCTAGTAGTACAAGGAGAAGAAGCCTGCCCAAGAACCTTCGCTATCCGCGGCAAGCAAAGCTTCCTCCTGATCTCGGAGTCAACCAATTCTTGAACAAGACAAGCAATGATGCCAGTGAGCCAGAGTTCCCTGAAGAAGAAGAAAAGTATACTGAAGATGGCGACATTGTTTGGGAATCGGATGAAATTGAAGCTATTCAGTCACTTTTCCAAGGGAGAATACCCCAAAAGCCGGGGAGTTTGAATAGGCAGAGGCCTCTACCACTCCCACTTCCTTACAAGGTTCGACCTTCCAGACTTCCATCACCCAAGAAAAACGCTGTTAAGATTGGACCAATGTCTAAGCAAGTGTACAAGAACCCCAATGCCCTTGTTGGTTTGGCAAGGGAAATTAGAAGCCTTGCAGCGGATAAAGATGTGGGCATAGTTCTCAACAAGAGGGTTCACTTTCTGCGAAAAGGGTCTCTCTCCATGACAATTCGGGAATTGGGTCACATGGGGCTTCCTGAGAGGGCTCTGCAGACCTTCTGTTGGGCTCAGAAACAGCCTCAGCTGTACCCTGATGACCGGATTTTGAGTTCGACAGTTGAGGTCCTGGCAAGGAACCATGAGCTGAAACTGCCATTTAATTTGGACAAGTTCACTAGTTCTGCGAGTCGTGGTGTGATTGAGGCAATGGTGAGAGGTTTCATTAAAGGAGGAAGCTTGCACCTAGCTTGGAAGCTAGTATCGGTAGCCAAGGATAATCAAAGGAAGCTGGATCCCAGCTTGTATGCCAAGCTAATAGTAGAGTTTGGGAAAAATCCTGATAAACATATGGTTGTAATGACCTTACTGGAGGAGCTTGGAGAAAGAGAAGACTTGAGTTTAAGCCAACAGGACTGTACTGCTATTATGAAAGTATGCATTAGGCTTGGAAAATTTGAAGTGGTCGAGAGTGTTTATGATTGGTTTAGACAATCTGGACACGATCCAACTGTCGTTATTTACACAACTTTGATTCACAGCCGCTACTCTGAGAAGAGATACAGGGAGGCCTTGGCTGTGGTTTGGGAAATGGAGGCTTCAAATTGTCTCTTTGACTTTCCAGCTTATCGAGTTGTAATAAAACTTTTTGTTGCTCTGAATGATCTTGCAAGGGCAGCAAGATATTTTTCAAAACTTAAAGAAGCAGGTTTTACACCAACATATGACGTATACCGGGATTTGATCAGAATTTACATGGTTTCTGGGCGGCTAGCCAAGTGTAGAGAGATTTGCAAGGAGGTAGAGATGGGAGGACTGAAGTTGGATCAAGAAACAATGTCTCATTTGTTGCAATTAGAAAGAGAGAAAAGGTTTGGTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_3

Protein Analysis

477

Amino Acids

54.7

Weight (kDa)

9.32

Isoelectric Point (pI)

46.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01860
fragaria_vesca	FvH4_5g25440
malus_domestica	MD00G1136800.v1.1 MD16G1284100.v1.1
prunus_persica	Prupe.5G010100_v2.0.a1 Prupe.5G010100_v2.0.a1 Prupe.5G010100_v2.0.a1
pyrus_communis	pycom16g26000
rosa_chinensis	RchiOBHm_Chr5g0066911
rosa_laevigata	RLG00000002634 RLG00000035892
rosa_roxburghii	Rroxscaffold_1G00014210
rosa_rugosa	Rorug05G0379600.1
rosa_samantha	Rh5BG456300 Rh5CG478400 Rh5DG471100
rosa_wichuraiana	Rw5G041080 Rw7G024910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1247
AccI	GTMKAC	2 cut(s)	233, 1281
AccII	CGCG	1 cut(s)	133
AciI	CCGC	6 cut(s)	41, 131, 133, 491, 1093, 1318
AclWI	GGATC	4 cut(s)	839, 852, 1049, 1383
AcsI	RAATTY	3 cut(s)	46, 1004, 1299
AcuI	CTGAAG	3 cut(s)	237, 258, 1388
AfaI	GTAC	4 cut(s)	94, 437, 641, 970
AfiI	CCNNNNNNNGG	4 cut(s)	158, 316, 490, 615
AgsI	TTSAA	6 cut(s)	178, 275, 328, 1010, 1152, 1242
AhlI	ACTAGT	1 cut(s)	728
AjnI	CCWGG	1 cut(s)	678
AloI	GAACNNNNNNTCC	2 cut(s)	646, 678
Alw26I	GTCTC	3 cut(s)	552, 1163, 1395
AlwI	GGATC	4 cut(s)	839, 852, 1049, 1383
AoxI	GGCC	2 cut(s)	338, 1119
ApeKI	GCWGC	2 cut(s)	488, 1226
ApoI	RAATTY	3 cut(s)	46, 1004, 1299
Asp700I	GAANNNNTTC	1 cut(s)	279
AspS9I	GGNCC	2 cut(s)	416, 676
AsuC2I	CCSGG	2 cut(s)	318, 1286
AsuHPI	GGTGA	2 cut(s)	381, 775
AsuNHI	GCTAGC	1 cut(s)	1321
AvaII	GGWCC	2 cut(s)	416, 676
BaeGI	GKGCMC	1 cut(s)	41
BamHI	GGATCC	1 cut(s)	844
BanII	GRGCYC	2 cut(s)	601, 622
BbsI	GAAGAC	1 cut(s)	948
BbvCI	CCTCAGC	1 cut(s)	633
BbvI	GCAGC	2 cut(s)	500, 1238
BccI	CCATC	3 cut(s)	236, 394, 1351
BciT130I	CCWGG	1 cut(s)	680
BclI	TGATCA	1 cut(s)	1293
BcnI	CCSGG	2 cut(s)	318, 1286
BcoDI	GTCTC	3 cut(s)	552, 1163, 1395
BcuI	ACTAGT	1 cut(s)	728
BfaI	CTAG	5 cut(s)	87, 729, 797, 809, 1322
BfmI	CTRYAG	1 cut(s)	602
BfuAI	ACCTGC	1 cut(s)	1247
BisI	GCNGC	5 cut(s)	134, 489, 1093, 1227, 1319
BlsI	GCNGC	5 cut(s)	135, 490, 1094, 1228, 1320
Bme1390I	CCNGG	3 cut(s)	318, 680, 1286
Bme18I	GGWCC	2 cut(s)	416, 676
BmgT120I	GGNCC	2 cut(s)	416, 676
BmiI	GGNNCC	2 cut(s)	689, 846
BmrFI	CCNGG	3 cut(s)	318, 680, 1286
BmsI	GCATC	1 cut(s)	184
BmtI	GCTAGC	1 cut(s)	1325
BoxI	GACNNNNGTC	1 cut(s)	421
BpiI	GAAGAC	1 cut(s)	948
BpmI	CTGGAG	1 cut(s)	941
Bpu10I	CCTNAGC	1 cut(s)	633
BpuEI	CTTGAG	1 cut(s)	967
BpuMI	CCSGG	2 cut(s)	318, 1286
BsaI	GGTCTC	1 cut(s)	552
BsaJI	CCNNGG	5 cut(s)	131, 295, 317, 822, 1122
BsaWI	WCCGGW	1 cut(s)	651
Bsc4I	CCNNNNNNNGG	4 cut(s)	158, 316, 490, 615
Bse1I	ACTGG	2 cut(s)	198, 924
Bse3DI	GCAATG	2 cut(s)	196, 765
BseBI	CCWGG	1 cut(s)	680
BseDI	CCNNGG	5 cut(s)	131, 295, 317, 822, 1122
BseGI	GGATG	1 cut(s)	271
BseLI	CCNNNNNNNGG	4 cut(s)	158, 316, 490, 615
BseMI	GCAATG	2 cut(s)	196, 765
BseMII	CTCAG	4 cut(s)	582, 635, 647, 1092
BseNI	ACTGG	2 cut(s)	198, 924
BseRI	GAGGAG	1 cut(s)	938
BseSI	GKGCMC	1 cut(s)	41
BseXI	GCAGC	2 cut(s)	500, 1238
BseYI	CCCAGC	1 cut(s)	848
Bsh1236I	CGCG	1 cut(s)	133
BshFI	GGCC	2 cut(s)	340, 1121
BsiSI	CCGG	3 cut(s)	317, 652, 1285
BslI	CCNNNNNNNGG	4 cut(s)	158, 316, 490, 615
BsmAI	GTCTC	3 cut(s)	552, 1163, 1395
BsnI	GGCC	2 cut(s)	340, 1121
Bso31I	GGTCTC	1 cut(s)	552
Bsp1286I	GDGCHC	3 cut(s)	41, 601, 622
Bsp1407I	TGTACA	1 cut(s)	435
Bsp143I	GATC	6 cut(s)	154, 844, 1054, 1213, 1293, 1375
BspACI	CCGC	6 cut(s)	41, 131, 133, 491, 1093, 1318
BspANI	GGCC	2 cut(s)	340, 1121
BspCNI	CTCAG	4 cut(s)	583, 634, 646, 1093
BspFNI	CGCG	1 cut(s)	133
BspLI	GGNNCC	2 cut(s)	689, 846
BspMAI	CTGCAG	1 cut(s)	606
BspMI	ACCTGC	1 cut(s)	1247
BspOI	GCTAGC	1 cut(s)	1325
BspPI	GGATC	4 cut(s)	839, 852, 1049, 1383
BspTNI	GGTCTC	1 cut(s)	552
BsrDI	GCAATG	2 cut(s)	196, 765
BsrGI	TGTACA	1 cut(s)	435
BsrI	ACTGG	2 cut(s)	198, 924
BssECI	CCNNGG	5 cut(s)	131, 295, 317, 822, 1122
BssMI	GATC	6 cut(s)	154, 844, 1054, 1213, 1293, 1375
BssNAI	GTATAC	2 cut(s)	234, 1282
BssT1I	CCWWGG	3 cut(s)	295, 822, 1122
Bst1107I	GTATAC	2 cut(s)	234, 1282
Bst2UI	CCWGG	1 cut(s)	680
Bst4CI	ACNGT	3 cut(s)	670, 968, 1063
Bst6I	CTCTTC	1 cut(s)	1100
BstAUI	TGTACA	1 cut(s)	435
BstC8I	GCNNGC	5 cut(s)	41, 110, 138, 791, 1323
BstDEI	CTNAG	5 cut(s)	426, 591, 621, 633, 1101
BstDSI	CCRYGG	1 cut(s)	131
BstF5I	GGATG	1 cut(s)	271
BstFNI	CGCG	1 cut(s)	133
BstKTI	GATC	6 cut(s)	157, 847, 1057, 1216, 1296, 1378
BstMAI	GTCTC	3 cut(s)	552, 1163, 1395
BstMBI	GATC	6 cut(s)	154, 844, 1054, 1213, 1293, 1375
BstMWI	GCNNNNNNNGC	3 cut(s)	142, 703, 1226
BstNI	CCWGG	1 cut(s)	680
BstPAI	GACNNNNGTC	1 cut(s)	421
BstSCI	CCNGG	3 cut(s)	316, 678, 1284
BstSFI	CTRYAG	1 cut(s)	602
BstSLI	GKGCMC	1 cut(s)	41
BstUI	CGCG	1 cut(s)	133
BstV1I	GCAGC	2 cut(s)	500, 1238
BstV2I	GAAGAC	1 cut(s)	948
BstX2I	RGATCY	1 cut(s)	844
BstYI	RGATCY	1 cut(s)	844
BstZ17I	GTATAC	2 cut(s)	234, 1282
BsuRI	GGCC	2 cut(s)	340, 1121
BtgI	CCRYGG	1 cut(s)	131
BtsCI	GGATG	1 cut(s)	271
BtsIMutI	CAGTG	1 cut(s)	205
BveI	ACCTGC	1 cut(s)	1247
Cac8I	GCNNGC	5 cut(s)	41, 110, 138, 791, 1323
Cfr13I	GGNCC	2 cut(s)	416, 676
Cfr42I	CCGCGG	1 cut(s)	134
CseI	GACGC	1 cut(s)	71
Csp6I	GTAC	4 cut(s)	93, 436, 640, 969
CviAII	CATG	6 cut(s)	10, 76, 556, 580, 692, 1306
CviQI	GTAC	4 cut(s)	93, 436, 640, 969
DdeI	CTNAG	5 cut(s)	426, 591, 621, 633, 1101
DpnI	GATC	6 cut(s)	156, 846, 1056, 1215, 1295, 1377
DpnII	GATC	6 cut(s)	154, 844, 1054, 1213, 1293, 1375
Eam1104I	CTCTTC	1 cut(s)	1100
EarI	CTCTTC	1 cut(s)	1100
Eco130I	CCWWGG	3 cut(s)	295, 822, 1122
Eco147I	AGGCCT	2 cut(s)	340, 1121
Eco24I	GRGCYC	2 cut(s)	601, 622
Eco31I	GGTCTC	1 cut(s)	552
Eco47I	GGWCC	2 cut(s)	416, 676
Eco57I	CTGAAG	3 cut(s)	237, 258, 1388
EcoO109I	RGGNCCY	1 cut(s)	676
EcoRII	CCWGG	1 cut(s)	678
EcoT14I	CCWWGG	3 cut(s)	295, 822, 1122
EcoT22I	ATGCAT	1 cut(s)	992
EcoT38I	GRGCYC	2 cut(s)	601, 622
ErhI	CCWWGG	3 cut(s)	295, 822, 1122
FaeI	CATG	6 cut(s)	13, 79, 559, 583, 695, 1309
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FatI	CATG	6 cut(s)	9, 75, 555, 579, 691, 1305
FauI	CCCGC	1 cut(s)	48
FauNDI	CATATG	2 cut(s)	900, 1273
FbaI	TGATCA	1 cut(s)	1293
FblI	GTMKAC	2 cut(s)	233, 1281
Fnu4HI	GCNGC	5 cut(s)	134, 489, 1093, 1227, 1319
FokI	GGATG	1 cut(s)	278
FriOI	GRGCYC	2 cut(s)	601, 622
Fsp4HI	GCNGC	5 cut(s)	134, 489, 1093, 1227, 1319
FspBI	CTAG	5 cut(s)	87, 729, 797, 809, 1322
GluI	GCNGC	5 cut(s)	134, 489, 1093, 1227, 1319
GsaI	CCCAGC	1 cut(s)	852
GsuI	CTGGAG	1 cut(s)	941
HaeIII	GGCC	2 cut(s)	340, 1121
HapII	CCGG	3 cut(s)	317, 652, 1285
HgaI	GACGC	1 cut(s)	71
Hin1II	CATG	6 cut(s)	13, 79, 559, 583, 695, 1309
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HindIII	AAGCTT	2 cut(s)	143, 787
HinfI	GANTC	5 cut(s)	25, 162, 260, 739, 1084
HpaII	CCGG	3 cut(s)	317, 652, 1285
HphI	GGTGA	2 cut(s)	381, 775
Hpy166II	GTNNAC	6 cut(s)	166, 234, 436, 529, 726, 1282
Hpy188I	TCNGA	6 cut(s)	161, 265, 624, 1102, 1209, 1298
Hpy188III	TCNNGA	9 cut(s)	152, 175, 378, 566, 590, 890, 1018, 1047, 1379
Hpy8I	GTNNAC	6 cut(s)	166, 234, 436, 529, 726, 1282
HpyAV	CCTTC	3 cut(s)	131, 384, 619
HpyCH4III	ACNGT	3 cut(s)	670, 968, 1063
HpyCH4IV	ACGT	1 cut(s)	1278
HpyCH4V	TGCA	9 cut(s)	9, 53, 488, 604, 793, 990, 1220, 1344, 1402
HpyF10VI	GCNNNNNNNGC	3 cut(s)	142, 703, 1226
HpyF3I	CTNAG	5 cut(s)	426, 591, 621, 633, 1101
HpySE526I	ACGT	1 cut(s)	1278
Hsp92II	CATG	6 cut(s)	13, 79, 559, 583, 695, 1309
Ksp22I	TGATCA	1 cut(s)	1293
KspI	CCGCGG	1 cut(s)	134
Kzo9I	GATC	6 cut(s)	154, 844, 1054, 1213, 1293, 1375
LmnI	GCTCC	1 cut(s)	925
Lsp1109I	GCAGC	2 cut(s)	500, 1238
LweI	GCATC	1 cut(s)	184
MaeI	CTAG	5 cut(s)	87, 729, 797, 809, 1322
MaeII	ACGT	1 cut(s)	1278
MaeIII	GTNAC	2 cut(s)	285, 575
MalI	GATC	6 cut(s)	156, 846, 1056, 1215, 1295, 1377
MboI	GATC	6 cut(s)	154, 844, 1054, 1213, 1293, 1375
MboII	GAAGA	7 cut(s)	114, 230, 233, 236, 251, 953, 1117
MflI	RGATCY	1 cut(s)	844
MhlI	GDGCHC	3 cut(s)	41, 601, 622
MlyI	GAGTC	2 cut(s)	171, 748
MmeI	TCCRAC	2 cut(s)	1082, 1353
Mph1103I	ATGCAT	1 cut(s)	992
MroXI	GAANNNNTTC	1 cut(s)	279
MseI	TTAA	6 cut(s)	408, 711, 777, 953, 1248, 1432
MspA1I	CMGCKG	3 cut(s)	133, 491, 637
MspI	CCGG	3 cut(s)	317, 652, 1285
MspR9I	CCNGG	3 cut(s)	318, 680, 1286
MvaI	CCWGG	1 cut(s)	680
MvnI	CGCG	1 cut(s)	133
MwoI	GCNNNNNNNGC	3 cut(s)	142, 703, 1226
NciI	CCSGG	2 cut(s)	318, 1286
NdeI	CATATG	2 cut(s)	900, 1273
NdeII	GATC	6 cut(s)	154, 844, 1054, 1213, 1293, 1375
NheI	GCTAGC	1 cut(s)	1321
NlaIII	CATG	6 cut(s)	13, 79, 559, 583, 695, 1309
NlaIV	GGNNCC	2 cut(s)	689, 846
NmuCI	GTSAC	2 cut(s)	285, 575
NsiI	ATGCAT	1 cut(s)	992
PceI	AGGCCT	2 cut(s)	340, 1121
PdmI	GAANNNNTTC	1 cut(s)	279
PfeI	GAWTC	3 cut(s)	25, 260, 1084
PkrI	GCNGC	5 cut(s)	135, 490, 1094, 1228, 1320
PleI	GAGTC	2 cut(s)	170, 747
PpsI	GAGTC	2 cut(s)	170, 747
PpuMI	RGGWCCY	1 cut(s)	676
PshAI	GACNNNNGTC	1 cut(s)	421
Psp5II	RGGWCCY	1 cut(s)	676
Psp6I	CCWGG	1 cut(s)	678
PspFI	CCCAGC	1 cut(s)	848
PspGI	CCWGG	1 cut(s)	678
PspN4I	GGNNCC	2 cut(s)	689, 846
PspPI	GGNCC	2 cut(s)	416, 676
PspPPI	RGGWCCY	1 cut(s)	676
PstI	CTGCAG	1 cut(s)	606
PsuI	RGATCY	1 cut(s)	844
PvuII	CAGCTG	1 cut(s)	637
RsaI	GTAC	4 cut(s)	94, 437, 641, 970
RsaNI	GTAC	4 cut(s)	93, 436, 640, 969
SacII	CCGCGG	1 cut(s)	134
SaqAI	TTAA	6 cut(s)	408, 711, 777, 953, 1248, 1432
SatI	GCNGC	5 cut(s)	134, 489, 1093, 1227, 1319
Sau3AI	GATC	6 cut(s)	154, 844, 1054, 1213, 1293, 1375
Sau96I	GGNCC	2 cut(s)	416, 676
SchI	GAGTC	2 cut(s)	171, 748
ScrFI	CCNGG	3 cut(s)	318, 680, 1286
SduI	GDGCHC	3 cut(s)	41, 601, 622
SfaNI	GCATC	1 cut(s)	184
SfcI	CTRYAG	1 cut(s)	602
Sfr303I	CCGCGG	1 cut(s)	134
SgrBI	CCGCGG	1 cut(s)	134
SinI	GGWCC	2 cut(s)	416, 676
SmlI	CTYRAG	1 cut(s)	946
SmoI	CTYRAG	1 cut(s)	946
SpeI	ACTAGT	1 cut(s)	728
SseBI	AGGCCT	2 cut(s)	340, 1121
SsiI	CCGC	6 cut(s)	41, 131, 133, 491, 1093, 1318
SspMI	CTAG	5 cut(s)	87, 729, 797, 809, 1322
StuI	AGGCCT	2 cut(s)	340, 1121
StyD4I	CCNGG	3 cut(s)	316, 678, 1284
StyI	CCWWGG	3 cut(s)	295, 822, 1122
TaaI	ACNGT	3 cut(s)	670, 968, 1063
TaiI	ACGT	1 cut(s)	1281
TaqI	TCGA	4 cut(s)	370, 665, 1017, 1180
TatI	WGTACW	3 cut(s)	92, 435, 968
TauI	GCSGC	3 cut(s)	136, 1095, 1321
TfiI	GAWTC	3 cut(s)	25, 260, 1084
Tru1I	TTAA	6 cut(s)	408, 711, 777, 953, 1248, 1432
Tru9I	TTAA	6 cut(s)	408, 711, 777, 953, 1248, 1432
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	2 cut(s)	285, 575
TseI	GCWGC	2 cut(s)	488, 1226
Tsp45I	GTSAC	2 cut(s)	285, 575
TspDTI	ATGAA	4 cut(s)	64, 282, 763, 995
TspRI	CASTG	1 cut(s)	205
VpaK11BI	GGWCC	2 cut(s)	416, 676
XapI	RAATTY	3 cut(s)	46, 1004, 1299
XmiI	GTMKAC	2 cut(s)	233, 1281
XmnI	GAANNNNTTC	1 cut(s)	279
XspI	CTAG	5 cut(s)	87, 729, 797, 809, 1322
Zsp2I	ATGCAT	1 cut(s)	992

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.